🧪
hypothesis

RNA Metabolism and Nucleocytoplasmic Transport Defects

Hypothesis

RNA Metabolism and Nucleocytoplasmic Transport Defects

Impaired RNA processing and disrupted nucleocytoplasmic transport represent a convergent molecular phenotype, but most compelling evidence derives from C9orf72 expansions specific to ALS/FTD.
🧬 RanGAP1, NUP205, C9orf72, FUS🩺 neurodegeneration🎯 Composite 58%💱 $0.54▼7.1%proposed
EvidencePending (0%)📖 0 cit🗣 1 debates 4 support 3 oppose
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arXiv PreprintNeurIPSNature MethodsPLOS ONE
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Composite58%

🧪 Overview

Impaired RNA processing and disrupted nucleocytoplasmic transport represent a convergent molecular phenotype, but most compelling evidence derives from C9orf72 expansions specific to ALS/FTD. Evidence for AD and PD relies on indirect measures (nuclear pore deterioration, splicing defects) that may be secondary. The FLINC assay and RanGAP1 assessment are falsifiable, but if nuclear import is normal in AD/PD patient-derived neurons, the cross-disease claim is falsified. Feasible trial population is C9orf72 carriers only.

🧬 Mechanism

🔗 Mechanism from KG for RanGAP1, NUP205, C9orf72, FUS

Auto-built from this analysis's top knowledge-graph edges.

graph TD
    GBA1_mutations["GBA1 mutations"] -->|increases risk| PD["PD"]
    TREM2_R47H_variant["TREM2 R47H variant"] -->|increases risk| Ad["Ad"]
    alpha_synuclein_fibrils["alpha-synuclein fibrils"] -->|activates| NLRP3_Inflammasome["NLRP3 Inflammasome"]
    TFEB_overexpression["TFEB overexpression"] -.->|inhibits| tau_A__pathology["tau/Aβ pathology"]
    TARDBP_MUTATIONS["TARDBP MUTATIONS"] -->|causes| ALS_FTD["ALS/FTD"]
    TDP_43_INCLUSIONS["TDP-43 INCLUSIONS"] -->|associated with| ALS_FTD_1["ALS/FTD"]
    NfL_reduction["NfL reduction"] -->|biomarker for| als["als"]
    TARDBP["TARDBP"] -->|cross disease mech| ALS["ALS"]
    TARDBP_2["TARDBP"] -->|cross disease mech| FTD["FTD"]
    TARDBP_3["TARDBP"] -->|cross disease mech| AD_LATE["AD/LATE"]
    h_cross_synth_tdp43_rna_p["h-cross-synth-tdp43-rna-proteostasis"] -->|proposes shared me| TARDBP_4["TARDBP"]
    SNCA["SNCA"] -->|cross disease mech| PD_5["PD"]
    style GBA1_mutations fill:#ce93d8,stroke:#333,color:#000
    style PD fill:#ef5350,stroke:#333,color:#000
    style TREM2_R47H_variant fill:#ce93d8,stroke:#333,color:#000
    style Ad fill:#ef5350,stroke:#333,color:#000
    style alpha_synuclein_fibrils fill:#4fc3f7,stroke:#333,color:#000
    style NLRP3_Inflammasome fill:#ce93d8,stroke:#333,color:#000
    style TFEB_overexpression fill:#4fc3f7,stroke:#333,color:#000
    style tau_A__pathology fill:#4fc3f7,stroke:#333,color:#000
    style TARDBP_MUTATIONS fill:#ce93d8,stroke:#333,color:#000
    style ALS_FTD fill:#ef5350,stroke:#333,color:#000
    style TDP_43_INCLUSIONS fill:#4fc3f7,stroke:#333,color:#000
    style ALS_FTD_1 fill:#ef5350,stroke:#333,color:#000
    style NfL_reduction fill:#ce93d8,stroke:#333,color:#000
    style als fill:#ef5350,stroke:#333,color:#000
    style TARDBP fill:#4fc3f7,stroke:#333,color:#000
    style ALS fill:#ef5350,stroke:#333,color:#000
    style TARDBP_2 fill:#4fc3f7,stroke:#333,color:#000
    style FTD fill:#ef5350,stroke:#333,color:#000
    style TARDBP_3 fill:#4fc3f7,stroke:#333,color:#000
    style AD_LATE fill:#ef5350,stroke:#333,color:#000
    style h_cross_synth_tdp43_rna_p fill:#4fc3f7,stroke:#333,color:#000
    style TARDBP_4 fill:#4fc3f7,stroke:#333,color:#000
    style SNCA fill:#4fc3f7,stroke:#333,color:#000
    style PD_5 fill:#ef5350,stroke:#333,color:#000

⚖️ Evidence

⚖️ Evidence Matrix4 supports3 contradicts
Supports
C9orf72 hexanucleotide expansion causes DPR toxicity and NCT disruption in ALS/FTD
PMID:25527282
Supports
RanGAP1 mislocalization demonstrated in C9orf72 iPSC neurons
PMID:28132797
Supports
Nuclear pore deterioration documented in AD brain by electron microscopy
PMID:28202704
Supports
Genome-wide associations link NCT genes to ALS, PD, and AD risk
PMID:28714951
Contradicts
RanGAP1 mislocalization is primarily C9orf72-specific in iPSC studies
PMID:iPSC comparative studies
Contradicts
AD nuclear pore deterioration is late-stage; insufficient to explain early cognitive impairment
PMID:28202704
Contradicts
RNA splicing defects appear in virtually all NDDs; may be general distress signal
PMID:Aging neurodegeneration literature
📖 Linked Papers

No linked papers recorded for this hypothesis yet.

🏥 Translation

🧬 3D Protein Structure — RANGAP1

No curated PDB or AlphaFold mapping for RANGAP1 yet. Search RCSB →

💉 Clinical Trials

No clinical trials data linked to this hypothesis yet.

No curated ClinVar variants loaded for this hypothesis.

Run scripts/backfill_clinvar_variants.py to fetch P/LP/VUS variants.

🔍 Search ClinVar for RanGAP1, NUP205, C9orf72, FUS →

No DepMap CRISPR Chronos data found for RanGAP1, NUP205, C9orf72, FUS.

Run python3 scripts/backfill_hypothesis_depmap.py to populate.

🏆 Tournament

🏆 Arenas / Elo

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📊 Market Indicators

7d Trend
Stable
7d Momentum
▼ 0.3%
Volatility
Low
0.0011
Events (7d)
2
Price History
▼7.1%

💾 Resource Usage

No resource usage or linked notebooks recorded for this hypothesis yet.

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