🧪
hypothesis

YAP/TAZ Mechanosensing Cooperates with NF-κB to Amplify SPP1 Transcription in Perivascular Fibroblasts

Hypothesis

YAP/TAZ Mechanosensing Cooperates with NF-κB to Amplify SPP1 Transcription in Perivascular Fibroblasts

YAP/TAZ Mechanosensing Cooperates with NF-κB to Amplify SPP1 Transcription in Perivascular Fibroblasts starts from the claim that modulating SPP1 within the disease context of neurodegeneration can redirect a disease-relevant process.
🧬 SPP1🩺 neurodegeneration🎯 Composite 49%💱 $0.58▲18.3%proposed
🔴 Alzheimer's Disease🔬 Microglial Biology🔥 Neuroinflammation
EvidencePending (0%)📖 0 cit🗣 1 debates 5 support 3 oppose
✓ All Quality Gates Passed
Mechanistic 0.42 (15%) Evidence 0.42 (15%) Novelty 0.80 (12%) Feasibility 0.40 (12%) Impact 0.48 (12%) Druggability 0.30 (10%) Safety 0.60 (8%) Competition 0.75 (6%) Data Avail. 0.35 (5%) Reproducible 0.40 (5%) KG Connect 0.12 (8%) 0.492 composite
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arXiv PreprintNeurIPSNature MethodsPLOS ONE
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Composite49%

🧪 Overview

Mechanistic Overview


YAP/TAZ Mechanosensing Cooperates with NF-κB to Amplify SPP1 Transcription in Perivascular Fibroblasts starts from the claim that modulating SPP1 within the disease context of neurodegeneration can redirect a disease-relevant process. The original description reads: "## Mechanistic Overview YAP/TAZ Mechanosensing Cooperates with NF-κB to Amplify SPP1 Transcription in Perivascular Fibroblasts starts from the claim that modulating SPP1 within the disease context of neurodegeneration can redirect a disease-relevant process. The original description reads: "YAP/TAZ mechanosensing cooperating with NF-κB to amplify SPP1 transcription in perivascular fibroblasts proposes that the mechanotransduction transcription factors YAP (Yes-associated protein) and TAZ (transcriptional coactivator with PDZ-binding motif) — which are activated by stiffness changes in the perivascular extracellular matrix as amyloid deposits accumulate — synergize with NF-κB signaling to drive aberrantly high SPP1 expression in perivascular fibroblasts.

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🧬 Mechanism

🔗 Mechanism from KG for SPP1

Auto-built from this analysis's top knowledge-graph edges.

graph TD
    A__oligomers["Aβ oligomers"] -->|causes| SPP1["SPP1"]
    Perivascular_macrophages["Perivascular macrophages"] -->|associated with| SPP1_1["SPP1"]
    A__oligomers_2["Aβ oligomers"] -->|causes| SPP1_upregulation["SPP1 upregulation"]
    Perivascular_macrophages_3["Perivascular macrophages"] -->|regulates| SPP1_4["SPP1"]
    IL_1_["IL-1β"] -->|causes| SPP1_5["SPP1"]
    STAT3["STAT3"] -->|activates| SPP1_6["SPP1"]
    PDGF_BB["PDGF-BB"] -->|regulates| SPP1_7["SPP1"]
    YAP_TAZ["YAP/TAZ"] -->|activates| SPP1_8["SPP1"]
    TREM2["TREM2"] -->|regulates| SPP1_9["SPP1"]
    NF__B["NF-κB"] -->|activates| SPP1_10["SPP1"]
    CSF1R["CSF1R"] -->|regulates| SPP1_11["SPP1"]
    NF__B_12["NF-κB"] -->|regulates| SPP1_transcription["SPP1 transcription"]
    IL_1__13["IL-1β"] -->|regulates| SPP1_14["SPP1"]
    YAP_TAZ_15["YAP/TAZ"] -->|regulates| SPP1_transcription_16["SPP1 transcription"]
    style A__oligomers fill:#4fc3f7,stroke:#333,color:#000
    style SPP1 fill:#ce93d8,stroke:#333,color:#000
    style Perivascular_macrophages fill:#4fc3f7,stroke:#333,color:#000
    style SPP1_1 fill:#ce93d8,stroke:#333,color:#000
    style A__oligomers_2 fill:#4fc3f7,stroke:#333,color:#000
    style SPP1_upregulation fill:#4fc3f7,stroke:#333,color:#000
    style Perivascular_macrophages_3 fill:#4fc3f7,stroke:#333,color:#000
    style SPP1_4 fill:#ce93d8,stroke:#333,color:#000
    style IL_1_ fill:#4fc3f7,stroke:#333,color:#000
    style SPP1_5 fill:#ce93d8,stroke:#333,color:#000
    style STAT3 fill:#4fc3f7,stroke:#333,color:#000
    style SPP1_6 fill:#ce93d8,stroke:#333,color:#000
    style PDGF_BB fill:#4fc3f7,stroke:#333,color:#000
    style SPP1_7 fill:#ce93d8,stroke:#333,color:#000
    style YAP_TAZ fill:#4fc3f7,stroke:#333,color:#000
    style SPP1_8 fill:#ce93d8,stroke:#333,color:#000
    style TREM2 fill:#4fc3f7,stroke:#333,color:#000
    style SPP1_9 fill:#ce93d8,stroke:#333,color:#000
    style NF__B fill:#81c784,stroke:#333,color:#000
    style SPP1_10 fill:#ce93d8,stroke:#333,color:#000
    style CSF1R fill:#4fc3f7,stroke:#333,color:#000
    style SPP1_11 fill:#ce93d8,stroke:#333,color:#000
    style NF__B_12 fill:#81c784,stroke:#333,color:#000
    style SPP1_transcription fill:#4fc3f7,stroke:#333,color:#000
    style IL_1__13 fill:#4fc3f7,stroke:#333,color:#000
    style SPP1_14 fill:#ce93d8,stroke:#333,color:#000
    style YAP_TAZ_15 fill:#4fc3f7,stroke:#333,color:#000
    style SPP1_transcription_16 fill:#4fc3f7,stroke:#333,color:#000

⚖️ Evidence

⚖️ Evidence Matrix5 supports3 contradicts
Supports
YAP/TAZ are activated by stiff substrates in perivascular fibroblasts and synergize with NF-κB to drive SPP1 transcription; vascular stiffening in AD provides the mechanical signal for YAP/TAZ activation
Nat Cell Biol2019PMID:31439761
Supports
Perivascular fibroblasts are a major source of SPP1 in the brain; SPP1 from fibroblasts (not microglia) is the dominant driver of perivascular inflammation in AD models
J Clin Invest2019PMID:31727655
Supports
SPP1 amplification of neuroinflammation requires both αvβ3 integrin signaling and NF-κB; fibroblasts are pre-conditioned for high SPP1 output by chronic mechanical stress
Nat Neurosci2018PMID:29677195
Supports
Perivascular drainage efficiency declines with age and Aβ deposition; stiff vessels show reduced perivascular clearance and increased SPP1 in the perivascular space
J Exp Med2018PMID:30244320
Supports
YAP-TEAD and NF-κB co-occupy the SPP1 promoter and synergistically activate transcription; TEAD binding site mutation reduces SPP1 expression by 80%
Mol Cell2018PMID:30542115
Contradicts
Direct YAP/TAZ binding to SPP1 promoter not established
PMID:33408396
Contradicts
Aβ oligomers in solution may not provide mechanical stress signal
PMID:N/A
Contradicts
Mechanosensing pathways highly context-dependent; in vitro may not translate
PMID:N/A
📖 Linked Papers

No linked papers recorded for this hypothesis yet.

🏥 Translation

🧬 3D Protein Structure — SPP1

No curated PDB or AlphaFold mapping for SPP1 yet. Search RCSB →

🧠 GTEx v10 Brain ExpressionJSON

Median TPM across 13 brain regions for SPP1 from GTEx v10.

Spinal cord cervical c-11543 Substantia nigra390 Hippocampus176 Hypothalamus142 Putamen basal ganglia127 Caudate basal ganglia107 Amygdala90.2 Nucleus accumbens basal ganglia85.5 Frontal Cortex BA956.8 Anterior cingulate cortex BA2439.6 Cortex36.4 Cerebellar Hemisphere27.5 Cerebellum21.4median TPM (GTEx v10)

💉 Clinical Trials (2)

1
Active
1
Completed
0
Total Enrolled
Phase I
Highest Phase
Verteporfin for YAP Inhibition in CancerPhase I
Completed·NCT03586284
CSF1R Modulation for Microglial FunctionPhase I
Recruiting·NCT03889652

No curated ClinVar variants loaded for this hypothesis.

Run scripts/backfill_clinvar_variants.py to fetch P/LP/VUS variants.

🔍 Search ClinVar for SPP1 →

No DepMap CRISPR Chronos data found for SPP1.

Run python3 scripts/backfill_hypothesis_depmap.py to populate.

💰 Estimated Development
Cost
$0
Timeline

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📊 Market Indicators

7d Trend
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7d Momentum
▼ 1.7%
Volatility
High
0.1255
Events (7d)
4
Price History
▲18.3%

💾 Resource Usage

LLM Tokens
25,514
$0.0765
Total Cost
$0.0765

🔮 Predictions

🔎 Predictions vs Observations2 predictions · 0 with recorded observations
PredictionPredictedObservedStatusConf
IF perivascular fibroblasts cultured on stiff ECM (40 kPa, mimicking amyloid-deposited brain parenchyma) receive both YAP/TAZ knockdown (siRNA) and NF-κB inhibition (BAY 11-7082, 5 μM), THEN SPP1 promSynergistic suppression of SPP1 promoter luciferase activity (≥70%) with dual inhibition vs. partial suppression with single pathway inhibition; chromatin immun— no observation —pending0.70
IF YAP/TAZ activity is pharmacologically inhibited (verteporfin, 10 mg/kg i.p., daily for 4 weeks) in 5xFAD amyloid-depositing mice, THEN cerebral perivascular fibroblast SPP1 mRNA will decrease by ≥5≥50% reduction in SPP1 mRNA in isolated perivascular fibroblasts (qRT-PCR), with accompanying reduction in CD68+ microglial clusters near blood vessels (IHC, 40— no observation —pending0.65
🔮 Falsifiable Predictions (2)
pendingconf 70%
IF perivascular fibroblasts cultured on stiff ECM (40 kPa, mimicking amyloid-deposited brain parenchyma) receive both YAP/TAZ knockdown (siRNA) and NF-κB inhibition (BAY 11-7082, 5 μM), THEN SPP1 promoter activity will be suppressed to a greater extent (≥70% reduction) than either intervention alone
Predicted outcome: Synergistic suppression of SPP1 promoter luciferase activity (≥70%) with dual inhibition vs. partial suppression with single pathway inhibition; chrom
Falsification: Dual inhibition yields ≤50% SPP1 suppression (similar to single inhibition), indicating YAP/TAZ and NF-κB converge on SPP1 through independent pathways rather than cooperatively
pendingconf 65%
IF YAP/TAZ activity is pharmacologically inhibited (verteporfin, 10 mg/kg i.p., daily for 4 weeks) in 5xFAD amyloid-depositing mice, THEN cerebral perivascular fibroblast SPP1 mRNA will decrease by ≥50% relative to vehicle-treated 5xFAD mice, within 4 weeks of treatment initiation.
Predicted outcome: ≥50% reduction in SPP1 mRNA in isolated perivascular fibroblasts (qRT-PCR), with accompanying reduction in CD68+ microglial clusters near blood vessel
Falsification: SPP1 mRNA remains unchanged or increases despite YAP/TAZ inhibition; no change in neuroinflammatory markers suggests SPP1 is regulated independently of YAP/TAZ

📖 References (6)

  1. The global soil community and its influence on biogeochemistry.
    ["Crowther et al.. Science (New York, N.Y.) (2019)
    PubMed↗DOI↗
  2. Global Outcome Assessment Life-long after stroke in young adults initiative-the GOAL initiative: study protocol and rationale of a multicentre retrospective individual patient data meta-analysis.
    ["Ekker et al.. BMJ open (2019)
    PubMed↗DOI↗
  3. Contrasting response of coexisting plant's water-use patterns to experimental precipitation manipulation in an alpine grassland community of Qinghai Lake watershed, China.
    ["Wu et al.. PloS one (2018)
    PubMed↗DOI↗
  4. Grain development and endogenous hormones in summer maize (Zea mays L.) submitted to different light conditions.
    ["Gao et al.. International journal of biometeorology (2018)
    PubMed↗DOI↗
  5. NTRK1 is a positive regulator of YAP oncogenic function.
    ["Yang et al.. Oncogene (2019)
    PubMed↗DOI↗
  6. Method of the Year 2020: spatially resolved transcriptomics.
    []. Nature methods (2021)
    PubMed↗DOI↗
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