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dataset

UK Biobank AD GWAS

📁 Dataset Info

UK Biobank Alzheimer's disease by proxy GWAS (Marioni et al. 2018; PMID 30315176). IEU OpenGWAS accession ieu-b-2. Phenotype: one or both parents with self-reported AD (UKB Fields 20107/20110). N=314,278 (cases=27,696, controls=286,582). Genome build GRCh37. BOLT-LMM v2.3.2; HRC r1.1 imputation panel; ~12M variants; 8 GW-significant loci. Summary statistics: https://gwas.mrcieu.ac.uk/datasets/ieu-b-2/ | doi:10.1038/s41398-018-0189-y

Format
remote
License
CC-BY 4.0 (IEU OpenGWAS redistribution)
Domain
neurodegeneration
Column schema (12 columns)
rsidTEXTdbSNP reference SNP identifier (rs-number)
chromosomeTEXTChromosome of the variant (GRCh37)
positionINTEGERBase pair position of the variant (GRCh37/hg19)
effect_alleleTEXTEffect allele tested for association; risk-increasing where beta > 0
other_alleleTEXTNon-effect (reference) allele at this variant
effect_allele_freqREALFrequency of the effect allele in UK Biobank participants
betaREALEffect size estimate for association with AD-by-proxy phenotype
seREALStandard error of the effect size estimate
p_valueREALGWAS association p-value
nINTEGEREffective sample size contributing to this variant's association test
evidence_tierTEXTEvidence quality tier: A (Marioni et al. 2018, PMID 30315176), B (preprint), C (minimal provenance)
row_citationTEXTPrimary citation for this association (Marioni et al. 2018, Transl Psychiatry)
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