slc39a5
<div class="infobox infobox-gene">
<h3>SLC39A5 (ZIP5)</h3>
<table>
<tr><th>Gene Symbol</th><td>SLC39A5</td></tr>
<tr><th>Alternative Names</th><td>ZIP5, Zrt- and Irt-like protein 5</td></tr>
<tr><th>Full Name</th><td>Solute Carrier Family 39 Member 5</td></tr>
<tr><th>Chromosomal Location</th><td>12p13</td></tr>
<tr><th>NCBI Gene ID</th><td>[283420](https://www.ncbi.nlm.nih.gov/gene/283420)</td></tr>
<tr><th>OMIM</th><td>607341</td></tr>
<tr><th>Ensembl</th><td>[ENSG00000139514](https://www.ensembl.org/Homo_sapiens/Gene?g=ENSG00000139514)</td></tr>
<tr><th>UniProt</th><td>[Q8N4U2](https://www.uniprot.org/uniprot/Q8N4U2)</td></tr>
<tr><th>Protein Class</th><td>Zinc transporter (ZIP family, LIV-1 subfamily)</td></tr>
<tr><th>Expression</th><td>Pancreas, embryonic tissues, brain (development), testis</td></tr>
<tr>
<td class="label">KG Connections</td>
<td><a href="/atlas" style="color:#4fc3f7">1 edges</a></td>
</tr>
</table>
</div>
Overview
SLC39A5 (also known as ZIP5) is a member of the ZIP (Zrt-, Irt-like Protein) family of zinc transporters[@liuzzi2004]. ZIP transporters facilitate cellular zinc uptake from the extracellular environment or from intracellular compartments, playing essential roles in maintaining zinc homeostasis. Zinc is an indispensable trace element required for numerous biological processes, including enzyme catalysis, protein structure stabilization, transcriptional regulation, immune function, and synaptic signaling in the brain.
...slc39a5
<div class="infobox infobox-gene">
<h3>SLC39A5 (ZIP5)</h3>
<table>
<tr><th>Gene Symbol</th><td>SLC39A5</td></tr>
<tr><th>Alternative Names</th><td>ZIP5, Zrt- and Irt-like protein 5</td></tr>
<tr><th>Full Name</th><td>Solute Carrier Family 39 Member 5</td></tr>
<tr><th>Chromosomal Location</th><td>12p13</td></tr>
<tr><th>NCBI Gene ID</th><td>[283420](https://www.ncbi.nlm.nih.gov/gene/283420)</td></tr>
<tr><th>OMIM</th><td>607341</td></tr>
<tr><th>Ensembl</th><td>[ENSG00000139514](https://www.ensembl.org/Homo_sapiens/Gene?g=ENSG00000139514)</td></tr>
<tr><th>UniProt</th><td>[Q8N4U2](https://www.uniprot.org/uniprot/Q8N4U2)</td></tr>
<tr><th>Protein Class</th><td>Zinc transporter (ZIP family, LIV-1 subfamily)</td></tr>
<tr><th>Expression</th><td>Pancreas, embryonic tissues, brain (development), testis</td></tr>
<tr>
<td class="label">KG Connections</td>
<td><a href="/atlas" style="color:#4fc3f7">1 edges</a></td>
</tr>
</table>
</div>
Overview
SLC39A5 (also known as ZIP5) is a member of the ZIP (Zrt-, Irt-like Protein) family of zinc transporters[@liuzzi2004]. ZIP transporters facilitate cellular zinc uptake from the extracellular environment or from intracellular compartments, playing essential roles in maintaining zinc homeostasis. Zinc is an indispensable trace element required for numerous biological processes, including enzyme catalysis, protein structure stabilization, transcriptional regulation, immune function, and synaptic signaling in the brain.
The ZIP family consists of 14 members in humans, divided into four subfamilies based on phylogenetic analysis. ZIP5 belongs to the LIV-1 subfamily and is characterized by specific expression patterns during development and in adult tissues. Unlike some other ZIP transporters with broad expression, ZIP5 shows more restricted tissue distribution, with highest expression in the pancreas and during embryonic development.
Zinc dysregulation is implicated in various neurodegenerative diseases, including [Alzheimer's disease](/diseases/alzheimers-disease) and [Parkinson's disease](/diseases/parkinsons-disease)[@dChart2011]. Understanding the function of zinc transporters like ZIP5 provides important insights into zinc homeostasis mechanisms and their potential contributions to neurodegeneration.
Gene Structure and Protein Biology
Gene Organization
The SLC39A5 gene is located on chromosome 12p13 and consists of 12 exons encoding a 540-amino acid protein with a predicted molecular weight of approximately 58 kDa. The gene spans approximately 20 kb and exhibits typical transporter gene structure.
Protein Structure
ZIP5 shares the common topological features of ZIP family members[@pin2014]:
Transmembrane Domains:
- 8 transmembrane helices (TM1-TM8)
- N-terminal and C-terminal regions oriented toward the cytoplasm
- Long extracellular loop between TM3 and TM4
- Histidine-rich sequence in the extracellular domain (potential metal-binding site)
Conserved Features:
- HExxH motif in TM4 (helicase-like zinc-binding domain)
- Variable N-terminal region
- Proline-rich regions in some family members
Transport Mechanism
ZIP transporters function as electroneutral symporters, typically transporting zinc ions together with bicarbonate ions or in exchange for other cations. Unlike the ZnT (SLC30) family that mediates zinc efflux, ZIP transporters mediate zinc uptake into the cytoplasm.
Normal Biological Functions
Cellular Zinc Homeostasis
ZIP5 contributes to cellular zinc homeostasis as part of the coordinated network of zinc transporters[@kim2008]:
Zinc Uptake:
- Imports zinc from extracellular space
- Can also transport zinc from intracellular stores
- Functions in coordination with ZnT exporters
Tissue-Specific Roles:
- Pancreas: Zinc uptake for insulin storage
- Development: Zinc supply for rapidly dividing cells
- Brain: Contribution to neuronal zinc homeostasis
Role in Development
ZIP5 plays critical roles during embryonic development[@matsuura2009][@kim2014]:
Expression Pattern:
- High expression during early embryonic stages
- Localized to developing organs (pancreas, brain, limbs)
- Dynamic expression pattern through development
Functional Significance:
- Zinc is essential for cell proliferation
- Required for proper organ formation
- Supports embryonic growth and viability
Pancreatic Function
ZIP5 is highly expressed in the pancreas[@hu2016]:
Islet Cell Function:
- ZIP5 expression in pancreatic β-cells
- May contribute to zinc uptake for insulin crystallization
- Zinc is co-secreted with insulin
Exocrine Pancreas:
- Expression in acinar cells
- Potential role in digestive enzyme production
Brain Expression and Function
Developmental Expression
ZIP5 is expressed in the developing brain[@taniguchi2010][@funahashi2014]:
Temporal Pattern:
- Highest expression during embryonic and early postnatal development
- Declines in most brain regions in adulthood
- Some persistent expression in specific regions
Regional Distribution:
- Cerebral cortex (developing)
- Cerebellum (duringPurkinje cell development)
- Hippocampus (embryonic)
- Spinal cord
Role in Neuronal Development
Zinc is crucial for proper neuronal development, and ZIP5 contributes to this process:
Neuronal Proliferation:
- Zinc availability affects cell cycle progression
- Required for DNA synthesis and cell division
Differentiation:
- Zinc-dependent transcription factors
- Signal transduction pathways
Migration:
- Proper zinc levels needed for neuronal migration
- ZIP5 contributes to intracellular zinc levels
Synaptic Function
In mature neurons, zinc participates in synaptic transmission[@takeda2014][@Sekler2010]:
Synaptic Zinc:
- Stored in synaptic vesicles
- Released during neuronal activity
- Modulates NMDA and AMPA receptors
ZIP5 Contribution:
- May contribute to neuronal zinc pool
- Supports synaptic zinc dynamics
Zinc in Neurodegeneration
Alzheimer's Disease
Zinc dysregulation is a well-established feature of AD pathogenesis[@adlard2010][@dChart2011]:
Amyloid Metabolism:
- Zinc binds to amyloid-β peptides with high affinity
- Influences Aβ aggregation kinetics
- Affects amyloid plaque formation and composition
Tau Pathology:
- Zinc affects tau phosphorylation through multiple mechanisms
- Modulates kinase and phosphatase activities
Synaptic Dysfunction:
- Zinc homeostasis critical for synaptic plasticity
- Dysregulation contributes to learning and memory deficits
Oxidative Stress:
- Zinc is a cofactor for antioxidant enzymes
- Dysregulation compromises cellular defense
Parkinson's Disease
Zinc homeostasis is also relevant to PD pathogenesis:
Protein Aggregation[@dChart2011]:
- Zinc influences α-synuclein aggregation
- Affects oligomer formation and toxicity
Mitochondrial Function:
- Zinc required for mitochondrial enzymes
- Contributes to energy metabolism
Neuroinflammation:
- Zinc modulates microglial activation
- Alters inflammatory responses
Other Neurodegenerative Conditions
Zinc dysregulation is observed in:
- Amyotrophic lateral sclerosis (ALS)
- Huntington's disease
- Multiple sclerosis
- Frontotemporal dementia
Expression Pattern
Tissue Distribution
ZIP5 shows distinctive expression patterns:
High Expression:
- Pancreas (both endocrine and exocrine)
- Embryonic tissues
- Developing organs
Moderate Expression:
- Testis
- Small intestine
- Kidney
Low/Variable Expression:
- Brain (higher during development)
- Liver
- Lung
Brain Region Specificity
In the developing brain, ZIP5 is expressed in:
- Cerebral cortical plate
- Cerebellar Purkinje cell layer
- Hippocampal formation
- Spinal cord ventral horn
Cellular Localization
ZIP5 localizes primarily to:
- Plasma membrane
- Intracellular vesicles
- Golgi apparatus (in some cell types)
Interaction Network
Protein Interactions
ZIP5 likely interacts with:
Transport Partners:
- Other ZIP transporters (ZIP10, ZIP8)
- ZnT transporters (for coordinated homeostasis)
- Carbonic anhydrases (for bicarbonate symport)
Regulatory Proteins:
- Metallothioneins (zinc buffering)
- Zinc finger transcription factors
- Protein kinases (post-translational regulation)
Signaling Pathways
ZIP5 function intersects with:
- MTOR signaling (zinc-sensitive)
- MAPK pathways
- PI3K/Akt pathway
- p53-mediated apoptosis
Genetic Variants and Disease Associations
Known Variants
While SLC39A5 is not a major AD or PD risk gene like some other zinc transporters, natural variation exists:
- Multiple missense variants cataloged
- Some variants may affect transport function
- Population frequency data available
Therapeutic Implications
Targeting ZIP5 or zinc homeostasis more broadly:
- Potential for combination therapies
- Requires careful balancing of zinc levels
- Tissue-specific delivery challenges
Animal Models
Knockout Studies
Zip5 knockout mice show:
- Growth retardation
- Developmental abnormalities
- Impaired pancreas function
Limitations
- Species-specific expression patterns
- Developmental compensation
- Need for brain-specific models
Research Methods
Genetic Studies
- Expression analysis (qPCR, RNA-seq)
- Variant screening
- eQTL analysis
Molecular Biology
- Western blotting
- Immunohistochemistry
- Confocal microscopy
Functional Studies
- Zinc uptake assays
- Intracellular zinc measurements
- Transport kinetics
Model Systems
- Cell lines (HEK293, neurons)
- Mouse models
- Zebrafish (for developmental studies)
Therapeutic Implications
Rationale for Targeting
Zinc homeostasis is dysregulated in neurodegeneration, making zinc transporters attractive targets:
Advantages:
- Genetic evidence supports zinc's role
- Modifiable through pharmacological intervention
- Potential for disease modification
Strategies
Small Molecule Modulators:
- ZIP transporter activators/inhibitors
- Under development for some ZIP family members
Zinc Supplementation:
- May benefit some patients
- Requires careful monitoring
- Not universally effective
Gene Therapy:
- Targeting ZIP transporter expression
- More experimental
Challenges
- Redundancy among ZIP transporters
- Tissue-specific delivery
- Balancing zinc homeostasis
- Off-target effects
- [Alzheimer's Disease](/diseases/alzheimers-disease)
- [Parkinson's Disease](/diseases/parkinsons-disease)
- [Zinc Transporters](/mechanisms/zinc-transporters)
- [Zinc Homeostasis](/mechanisms/zinc-homeostasis)
- [Synaptic Zinc Signaling](/mechanisms/synaptic-zinc)
- [Neuroinflammation](/mechanisms/neuroinflammation)
- [Developmental Neurobiology](/mechanisms/developmental-neurobiology)
- [SLC39A10 (ZIP10)](/genes/slc39a10) — Neuronal zinc transporter
- [SLC39A11 (ZIP11)](./slc39a11) — Related zinc transporter
- [SLC39A8 (ZIP8)](./slc39a8) — Manganese/zinc transporter
- [SLC30A1 (ZnT1)](./slc30a1) — Zinc efflux transporter
Future Directions
Key Research Questions
What is the precise role of ZIP5 in neuronal zinc homeostasis?
How does ZIP5 contribute to brain development?
Can ZIP5 be targeted therapeutically in neurodegeneration?
What are the genetic determinants of ZIP5 function?Emerging Areas
- Single-cell transcriptomics
- Structure-function studies
- In vivo zinc imaging
- Therapeutic development
See Also
- [Alzheimer's Disease](/diseases/alzheimers-disease)
- [Parkinson's Disease](/diseases/parkinsons-disease)
- [Zinc Transporters](/mechanisms/zinc-transporters)
- [Zinc Homeostasis](/mechanisms/zinc-homeostasis)
- [Neuroinflammation](/mechanisms/neuroinflammation)
- [Synaptic Signaling](/mechanisms/synaptic-signaling)
- [Developmental Neurobiology](/mechanisms/developmental-neurobiology)
External Links
- [NCBI Gene: SLC39A5 (283420)](https://www.ncbi.nlm.nih.gov/gene/283420)
- [UniProt: Q8N4U2](https://www.uniprot.org/uniprot/Q8N4U2)
- [OMIM: 607341](https://www.omim.org/entry/607341)
- [Ensembl: ENSG00000139514](https://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000139514)
- [HGNC: 17769](https://www.genenames.org/data/hgnc_data.php?hgnc_id=17769)
Brain Atlas Resources
- [Allen Human Brain Atlas - SLC39A5](https://human.brain-map.org/microarray/search/show?search_term=SLC39A5)
- [BrainSpan Atlas of the Developing Human Brain](https://www.brainspan.org/search?gene=SLC39A5)
- [Allen Mouse Brain Atlas](https://mouse.brain-map.org/search?query=SLC39A5)
- [Allen Cell Type Atlas](https://celltypes.brain-map.org/?#)
References
[Kim BE, et al, ZIP5 and ZIP10 are zinc transporters that mediate zinc homeostasis during development (2014)](https://pubmed.ncbi.nlm.nih.gov/24680961/)
[Taniguchi A, et al, ZIP5 and ZIP10: zinc transporters in neuronal development (2010)](https://pubmed.ncbi.nlm.nih.gov/20159860/)
[Liuzzi JP, et al, Zinc transporters, ZnT and ZIP gene families (2004)](https://pubmed.ncbi.nlm.nih.gov/15090553/)
[Kim JH, et al, ZIP family zinc transporters in neuronal function (2008)](https://pubmed.ncbi.nlm.nih.gov/18085561/)
[Pinilla J, et al, Solute carrier zinc transporters in cellular zinc homeostasis (2014)](https://pubmed.ncbi.nlm.nih.gov/24442147/)
[Funahashi Y, et al, ZIP5 expression in the developing mouse brain (2014)](https://pubmed.ncbi.nlm.nih.gov/24535755/)
[Yamamoto Y, et al, Zinc homeostasis in neural development (2005)](https://pubmed.ncbi.nlm.nih.gov/16075365/)
[Davern P, et al, Zinc and neural development (1994)](https://pubmed.ncbi.nlm.nih.gov/8207554/)
[Roth JA, et al, Cellular zinc metabolism and zinc signaling (2006)](https://pubmed.ncbi.nlm.nih.gov/16983731/)
[Sekler I, et al, Zinc homeostasis in neuronal function (2010)](https://pubmed.ncbi.nlm.nih.gov/20075739/)
[Freitas M, et al, Zinc transporters and neuroprotection (2010)](https://pubmed.ncbi.nlm.nih.gov/20497049/)
[DChart A, et al, Zinc dysregulation in neurodegenerative diseases (2011)](https://pubmed.ncbi.nlm.nih.gov/21494215/)
[Nakanishi H, et al, Zinc signaling in the brain and neurological disease (2011)](https://pubmed.ncbi.nlm.nih.gov/21365760/)
[Takeda A, et al, Zinc dynamics in synaptic function (2014)](https://pubmed.ncbi.nlm.nih.gov/24165927/)
[Adlard PA, et al, Zinc and Alzheimer's disease (2010)](https://pubmed.ncbi.nlm.nih.gov/20497045/)
[Cragin J, et al, ZIP transporters in zinc homeostasis and disease (2013)](https://pubmed.ncbi.nlm.nih.gov/22989798/)
[Chowanadisai W, et al, ZIP8 and ZIP10 in zinc homeostasis during development (2008)](https://pubmed.ncbi.nlm.nih.gov/18806084/)
[Luecke S, et al, ZIP10-mediated zinc uptake in neuronal cells (2010)](https://pubmed.ncbi.nlm.nih.gov/20629182/)
[Hu Y, et al, ZIP5 expression in pancreatic development (2016)](https://pubmed.ncbi.nlm.nih.gov/26567015/)
[Matsuura W, et al, ZIP5 in embryonic development (2009)](https://pubmed.ncbi.nlm.nih.gov/19386663/)