% Bibliography for hypothesis h-b295a9dd
% Title: Lysosomal Positioning Dynamics Modulation
% Generated: 2026-06-08T02:40:15Z

@article{pmid41287364,
  title = {Efficacy of Der f 2/Zen 1-LAMP1 Plasmid-Based Vaccine Immunotherapy in Dogs With Atopic Dermatitis: A Proof-of-Concept Study.},
  author = {Bizikova P, Matsumoto C, Ogino S, Tsukui T, Love K et al.},
  journal = {Vet Dermatol},
  year = {2026},
  pmid = {41287364},
  doi = {doi: 10.1111/vde.70037},
  url = {https://pubmed.ncbi.nlm.nih.gov/41287364/},
}

@article{pmid41485143,
  title = {Measuring lysosome damage and lysophagy in vivo.},
  author = {Wu Z, Zhan H, Huang Z, Wang C, Li B et al.},
  journal = {Autophagy},
  year = {2026},
  pmid = {41485143},
  doi = {doi: 10.1080/15548627.2025.2608974},
  url = {https://pubmed.ncbi.nlm.nih.gov/41485143/},
}

@article{pmid41518198,
  title = {Metabolites released from apoptotic cells in central nervous system orchestrates the pathological process of Alzheimer disease through improving autophagy.},
  author = {Xiao F, Tan X, He A, Zhou Y, Xu K et al.},
  journal = {Autophagy},
  year = {2026},
  pmid = {41518198},
  doi = {doi: 10.1080/15548627.2026.2615978},
  url = {https://pubmed.ncbi.nlm.nih.gov/41518198/},
}

@article{pmid41825675,
  title = {Preparation of a polyclonal antibody against Lysosome-Associated Membrane Protein-1 for chicken and its application in the liver of broilers under chronic heat stress.},
  author = {Luo J, Shi Y, Jiang X, Zhang B, Chen Y et al.},
  journal = {Int J Biol Macromol},
  year = {2026},
  pmid = {41825675},
  doi = {doi: 10.1016/j.ijbiomac.2026.151401},
  url = {https://pubmed.ncbi.nlm.nih.gov/41825675/},
}

@article{pmid41923452,
  title = {Increased Glycogenin-Exposed Residual Glycogen in Lysosomes Is the Early Pathological Finding in Asymptomatic Pompe Disease.},
  author = {Shi Y, Zhang N, Sun H, Wang Y, Zhao D et al.},
  journal = {Muscle Nerve},
  year = {2026},
  pmid = {41923452},
  doi = {doi: 10.1002/mus.70233},
  url = {https://pubmed.ncbi.nlm.nih.gov/41923452/},
}

@article{pmid39233232,
  title = {Alpha-synuclein, autophagy-lysosomal pathway, and Lewy bodies: Mutations, propagation, aggregation, and the formation of inclusions.},
  author = {Bayati A, McPherson PS},
  journal = {J Biol Chem},
  year = {2024},
  pmid = {39233232},
  doi = {10.1016/j.jbc.2024.107742},
  url = {https://pubmed.ncbi.nlm.nih.gov/39233232},
}

@article{pmid37257946,
  title = {Wild-type and pathogenic forms of ubiquilin 2 differentially modulate components of the autophagy-lysosome pathways.},
  author = {Idera A, Sharkey LM, Kurauchi Y, Kadoyama K, Paulson HL, Katsuki H, Seki T},
  journal = {Journal of pharmacological sciences},
  year = {2023},
  pmid = {37257946},
  doi = {10.1016/j.jphs.2023.05.002},
  url = {https://pubmed.ncbi.nlm.nih.gov/37257946/},
}

@article{pmid37390818,
  title = {Lysosomal LAMP proteins regulate lysosomal pH by direct inhibition of the TMEM175 channel.},
  author = {Zhang J, Zeng W, Han Y, Lee WR, Liou J, Jiang Y},
  journal = {Mol Cell},
  year = {2023},
  pmid = {37390818},
  doi = {10.1016/j.molcel.2023.06.004},
  url = {https://pubmed.ncbi.nlm.nih.gov/37390818},
}

@article{pmid35266854,
  title = {Lamp1 mediates lipid transport, but is dispensable for autophagy in Drosophila.},
  author = {Chaudhry N, Sica M, Surabhi S, Hernandez DS, Mesquita A, Selimovic A, Riaz A, Lescat L, Bai H, MacIntosh GC, Jenny A},
  journal = {Autophagy},
  year = {2022},
  pmid = {35266854},
  doi = {10.1080/15548627.2022.2038999},
  url = {https://pubmed.ncbi.nlm.nih.gov/35266854/},
}

@article{pmid35754279,
  title = {Endosomal-Lysosomal and Autophagy Pathway in Alzheimer's Disease: A Systematic Review and Meta-Analysis.},
  author = {Saffire H Krance, Che-Yuan Wu, Alison C Y Chan, Stephanie Kwong, Bing Xin Song et al.},
  journal = {Journal of Alzheimer's disease : JAD},
  year = {2022},
  pmid = {35754279},
  doi = {10.3233/JAD-220360},
  url = {https://pubmed.ncbi.nlm.nih.gov/35754279},
}

@article{pmid33111641,
  title = {Ischemia-induced upregulation of autophagy preludes dysfunctional lysosomal storage and associated synaptic impairments in neurons.},
  author = {Zhang X, Wei M, Fan J, Yan W, Zha X, Song H, Wan R, Yin Y, Wang W},
  journal = {Autophagy},
  year = {2021},
  pmid = {33111641},
  doi = {10.1080/15548627.2020.1840796},
  url = {https://pubmed.ncbi.nlm.nih.gov/33111641},
}

@article{pmid34102054,
  title = {Genetically Encoded, pH-Sensitive mTFP1 Biosensor for Probing Lysosomal pH.},
  author = {Chin MY, Patwardhan AR, Ang KH, Wang AL, Alquezar C, Welch M, Nguyen PT, Grabe M, Molofsky AV, Arkin MR, Kao AW},
  journal = {ACS sensors},
  year = {2021},
  pmid = {34102054},
  doi = {10.1021/acssensors.0c02318},
  url = {https://pubmed.ncbi.nlm.nih.gov/34102054/},
}

@article{pmid30465198,
  title = {CD107a Degranulation Assay to Evaluate Immune Cell Antitumor Activity.},
  author = {Lorenzo-Herrero S, Sordo-Bahamonde C, Gonzalez S, López-Soto A},
  journal = {Methods in molecular biology (Clifton, N.J.)},
  year = {2019},
  pmid = {30465198},
  doi = {10.1007/978-1-4939-8885-3_7},
  url = {https://pubmed.ncbi.nlm.nih.gov/30465198/},
}

@article{pmid30538141,
  title = {ATP13A2 facilitates HDAC6 recruitment to lysosome to promote autophagosome-lysosome fusion.},
  author = {Wang R, Tan J, Chen T, Han H, Tian R, Tan Y, Wu Y, Cui J, Chen F, Li J, Lv L, Guan X, Shang S, Lu J, Zhang Z},
  journal = {The Journal of cell biology},
  year = {2019},
  pmid = {30538141},
  doi = {10.1083/jcb.201804165},
  url = {https://pubmed.ncbi.nlm.nih.gov/30538141/},
}

@article{pmid31097587,
  title = {Circumventing kinetics in biogeochemical modeling.},
  author = {["Louca S", "Scranton M", "Taylor G", "Astor Y", "Crowe S", "Doebeli M"]},
  journal = {Proceedings of the National Academy of Sciences of the United States of America},
  year = {2019},
  pmid = {31097587},
  doi = {10.1073/pnas.1819883116},
}

@article{pmid29940787,
  title = {Revisiting LAMP1 as a marker for degradative autophagy-lysosomal organelles in the nervous system.},
  author = {Cheng XT, Xie YX, Zhou B, Huang N, Farfel-Becker T, Sheng ZH},
  journal = {Autophagy},
  year = {2018},
  pmid = {29940787},
  doi = {10.1080/15548627.2018.1482147},
  url = {https://pubmed.ncbi.nlm.nih.gov/29940787/},
}

@article{pmid27694926,
  title = {NUP98 is rearranged in 3.8% of pediatric AML forming a clinical and molecular homogenous group with a poor prognosis.},
  author = {["Struski S", "Lagarde S", "Bories P", "Puiseux C", "Prade N", "Cuccuini W", "Pages M", "Bidet A", "Gervais C", "Lafage-Pochitaloff M"]},
  journal = {Leukemia},
  year = {2017},
  pmid = {27694926},
  doi = {10.1038/leu.2016.267},
}

@article{pmid29056344,
  title = {Comprehensive Analysis of Hypermutation in Human Cancer.},
  author = {["Campbell B", "Light N", "Fabrizio D", "Zatzman M", "Fuligni F", "de Borja R", "Davidson S", "Edwards M", "Elvin J", "Hodel K"]},
  journal = {Cell},
  year = {2017},
  pmid = {29056344},
  doi = {10.1016/j.cell.2017.09.048},
}

@article{pmid29141841,
  title = {In Utero Brain Development in Fetuses With Congenital Heart Disease: Another Piece of the Jigsaw Provided by Blood Oxygen Level-Dependent Magnetic Resonance Imaging.},
  author = {Mike Seed},
  journal = {Circulation. Cardiovascular imaging},
  year = {2017},
  pmid = {29141841},
  doi = {10.1161/CIRCIMAGING.117.007181},
}

@article{pmid27698049,
  title = {Returning to Work},
  author = {Cowie Martin R},
  journal = {Circulation},
  year = {2016},
  pmid = {27698049},
  doi = {10.1161/CIRCULATIONAHA.116.024635},
}

@article{pmid25387768,
  title = {Vitamin D, virus etiology, and atopy in first-time wheezing children in Finland.},
  author = {Annamari Koistinen; Riitta Turunen; Tytti Vuorinen; Maria Söderlund-Venermo; Carlos A Camargo; Olli Ruuskanen; Tuomas Jartti},
  journal = {Pediatric allergy and immunology : official publication of the European Society of Pediatric Allergy and Immunology},
  year = {2015},
  pmid = {25387768},
  doi = {10.1111/pai.12308},
}

@article{pmid25378173,
  title = {A model of synaptic vesicle-pool depletion and replenishment can account for the interspike interval distributions and nonrenewal properties of spontaneous spike trains of auditory-nerve fibers.},
  author = {["Peterson A", "Irvine D", "Heil P"]},
  journal = {The Journal of neuroscience : the official journal of the Society for Neuroscience},
  year = {2014},
  pmid = {25378173},
  doi = {10.1523/JNEUROSCI.0903-14.2014},
}

@article{pmid20471632,
  title = {Markers of gluten sensitivity and celiac disease in recent-onset psychosis and multi-episode schizophrenia.},
  author = {["Dickerson F", "Stallings C", "Origoni A", "Vaughan C", "Khushalani S", "Leister F", "Yang S", "Krivogorsky B", "Alaedini A", "Yolken R"]},
  journal = {Biological psychiatry},
  year = {2010},
  pmid = {20471632},
  doi = {10.1016/j.biopsych.2010.03.021},
}

@article{pmid16973206,
  title = {Roles of LAMP-1 and LAMP-2 in lysosome biogenesis and autophagy.},
  author = {Eskelinen EL},
  journal = {Mol Aspects Med},
  year = {2006},
  pmid = {16973206},
  doi = {10.1016/j.mam.2006.08.005},
  url = {https://pubmed.ncbi.nlm.nih.gov/16973206},
}