% Bibliography for hypothesis h-e3e8407c
% Title: The Mitochondrial-Lysosomal Metabolic Coupling Dysfunction
% Generated: 2026-06-08T03:09:42Z

@article{pmid41391758,
  title = {Enhanced lysosomal activity prevents infection with PrPSc and the seeding activity of α-synuclein & tau prions.},
  author = {Mercer RCC, Le NTT, Mirza-Romero NA, Orbe IC, Flaherty E, DeFranco JP, Lavigna G, Gatdula JRP, Fraser DG, Sundaravadivelu A, Vultaggio JS, Beeler AB, Chiesa R, Telling GC, Harris DA},
  journal = {The Journal of biological chemistry},
  year = {2026},
  pmid = {41391758},
  doi = {10.1016/j.jbc.2025.111050},
  url = {https://pubmed.ncbi.nlm.nih.gov/41391758/},
}

@article{pmid41506439,
  title = {Astrocytic TPK1 mitigates amyloid pathology via TFEB-mediated endocytosis.},
  author = {Zhang SZ, Ma Y, Ding Y, Yin YQ, Wang BW, Hu G, Zhou JW},
  journal = {Experimental neurology},
  year = {2026},
  pmid = {41506439},
  doi = {10.1016/j.expneurol.2026.115640},
  url = {https://pubmed.ncbi.nlm.nih.gov/41506439/},
}

@article{pmid41543365,
  title = {Organelle dysfunction and TNT-mediated aggregate spreading in neurodegeneration.},
  author = {Thomas V, Zurzolo C},
  journal = {Physiology (Bethesda, Md.)},
  year = {2026},
  pmid = {41543365},
  doi = {10.1152/physiol.00048.2025},
  url = {https://pubmed.ncbi.nlm.nih.gov/41543365/},
}

@article{pmid41900026,
  title = {Chemical and Molecular Strategies in Restoring Autophagic Flux in TDP-43 Proteinopathy.},
  author = {Jamerlan A, Hulme J},
  journal = {Molecules (Basel, Switzerland)},
  year = {2026},
  pmid = {41900026},
  doi = {10.3390/molecules31060924},
  url = {https://pubmed.ncbi.nlm.nih.gov/41900026/},
}

@article{pmid41919495,
  title = {Lysosomal homeostasis at the crossroads of neurodegeneration.},
  author = {De Tito S, Tooze SA},
  journal = {The Journal of clinical investigation},
  year = {2026},
  pmid = {41919495},
  doi = {10.1172/JCI199845},
  url = {https://pubmed.ncbi.nlm.nih.gov/41919495/},
}

@article{pmid39689715,
  title = {The cGAS-STING pathway activates transcription factor TFEB to stimulate lysosome biogenesis and pathogen clearance.},
  author = {Xu Y, Wang Q, Wang J, Qian C, Wang Y, Lu S, Song L, He Z, Liu W, Wan W},
  journal = {Immunity},
  year = {2025},
  pmid = {39689715},
  doi = {10.1016/j.immuni.2024.11.017},
  url = {https://pubmed.ncbi.nlm.nih.gov/39689715/},
}

@article{pmid38066314,
  title = {Longitudinal modeling of human neuronal aging reveals the contribution of the RCAN1-TFEB pathway to Huntington's disease neurodegeneration.},
  author = {["Lee S", "Oh Y", "Victor M", "Yang Y", "Chen S", "Strunilin I", "Dahiya S", "Dolle R", "Pak S", "Silverman G"]},
  journal = {Nature aging},
  year = {2024},
  pmid = {38066314},
  doi = {10.1038/s43587-023-00538-3},
}

@article{pmid39196068,
  title = {Lactylation stabilizes TFEB to elevate autophagy and lysosomal activity.},
  author = {Huang Y, Luo G, Peng K, Song Y, Wang Y, Zhang H, Li J, Qiu X, Pu M, Liu X, Peng C, Neculai D, Sun Q, Zhou T, Huang P, Liu W},
  journal = {The Journal of cell biology},
  year = {2024},
  pmid = {39196068},
  doi = {10.1083/jcb.202308099},
  url = {https://pubmed.ncbi.nlm.nih.gov/39196068/},
}

@article{pmid35435793,
  title = {Acetylation in the regulation of autophagy.},
  author = {Xu Y, Wan W},
  journal = {Autophagy},
  year = {2023},
  pmid = {35435793},
  doi = {10.1080/15548627.2022.2062112},
  url = {https://pubmed.ncbi.nlm.nih.gov/35435793},
}

@article{pmid34057020,
  title = {Autophagy and ALS: mechanistic insights and therapeutic implications.},
  author = {Chua JP, De Calbiac H, Kabashi E, Barmada SJ},
  journal = {Autophagy},
  year = {2022},
  pmid = {34057020},
  doi = {10.1080/15548627.2021.1926656},
  url = {https://pubmed.ncbi.nlm.nih.gov/34057020},
}

@article{pmid35118419,
  title = {Harlequin syndrome associated with thoracic epidural anaesthesia.},
  author = {Persson RM, Tellnes K, Hoven H, Haaverstad R, Svendsen ØS},
  journal = {Anaesthesia reports},
  year = {2022},
  pmid = {35118419},
  doi = {10.1002/anr3.12144},
  url = {https://pubmed.ncbi.nlm.nih.gov/35118419/},
}

@article{pmid34285270,
  title = {Transmission dynamics of a linear vanA-plasmid during a nosocomial multiclonal outbreak of vancomycin-resistant enterococci in a non-endemic area, Japan.},
  author = {Fujiya Y, Harada T, Sugawara Y, Akeda Y, Yasuda M, Masumi A, Hayashi J, Tanimura N, Tsujimoto Y, Shibata W, Yamaguchi T, Kawahara R, Nishi I, Hamada S, Tomono K, Kakeya H},
  journal = {Scientific reports},
  year = {2021},
  pmid = {34285270},
  doi = {10.1038/s41598-021-94213-5},
  url = {https://pubmed.ncbi.nlm.nih.gov/34285270/},
}

@article{pmid33199700,
  title = {High resolution spatiotemporal patterns of seawater temperatures across the Belize Mesoamerican Barrier Reef.},
  author = {Helmuth B, Leichter JJ, Rotjan RD, Castillo KD, Fieseler C, Jones S, Choi F},
  journal = {Scientific data},
  year = {2020},
  pmid = {33199700},
  doi = {10.1038/s41597-020-00733-6},
  url = {https://pubmed.ncbi.nlm.nih.gov/33199700/},
}

@article{pmid30335591,
  title = {Trehalose induces autophagy via lysosomal-mediated TFEB activation in models of motoneuron degeneration.},
  author = {Rusmini P, Cortese K, Crippa V, Cristofani R, Cicardi ME, Ferrari V, Vezzoli G, Tedesco B, Meroni M, Messi E},
  journal = {Autophagy},
  year = {2019},
  pmid = {30335591},
  doi = {10.1080/15548627.2018.1535292},
  url = {https://pubmed.ncbi.nlm.nih.gov/30335591},
}

@article{pmid30135581,
  title = {Allergic inflammatory memory in human respiratory epithelial progenitor cells.},
  author = {Ordovas-Montanes J, Dwyer DF, Nyquist SK, Buchheit KM, Vukovic M, Deb C, Wadsworth MH, Hughes TK, Kazer SW, Yoshimoto E, Cahill KN, Bhattacharyya N, Katz HR, Berger B, Laidlaw TM, Boyce JA, Barrett NA, Shalek AK},
  journal = {Nature},
  year = {2018},
  pmid = {30135581},
  doi = {10.1038/s41586-018-0449-8},
  url = {https://pubmed.ncbi.nlm.nih.gov/30135581/},
}

@article{pmid26968346,
  title = {The Autophagy-Lysosomal Pathway in Neurodegeneration: A TFEB Perspective.},
  author = {["Martini-Stoica H", "Xu Y", "Ballabio A", "Zheng H"]},
  journal = {Trends in neurosciences},
  year = {2016},
  pmid = {26968346},
  doi = {10.1016/j.tins.2016.02.002},
}

@article{pmid27252382,
  title = {TFEB at a glance.},
  author = {Napolitano G, Ballabio A},
  journal = {Journal of cell science},
  year = {2016},
  pmid = {27252382},
  doi = {10.1242/jcs.146365},
  url = {https://pubmed.ncbi.nlm.nih.gov/27252382/},
}

@article{pmid27501449,
  title = {The Lysosome as a Regulatory Hub.},
  author = {["Perera R", "Zoncu R"]},
  journal = {Annual review of cell and developmental biology},
  year = {2016},
  pmid = {27501449},
  doi = {10.1146/annurev-cellbio-111315-125125},
}

@article{pmid21617040,
  title = {TFEB links autophagy to lysosomal biogenesis.},
  author = {Settembre C, Di Malta C, Polito VA, Garcia Arencibia M, Vetrini F, Erdin S, Erdin SU, Huynh T, Medina D, Colella P, Sardiello M, Rubinsztein DC, Ballabio A},
  journal = {Science (New York, N.Y.)},
  year = {2011},
  pmid = {21617040},
  doi = {10.1126/science.1204592},
  url = {https://pubmed.ncbi.nlm.nih.gov/21617040/},
}