% Bibliography for hypothesis h-gap-e7852b55-m2
% Title: ATAC-seq accessibility separates causal from compensatory states in: Are age-related DNA methylation changes protective adaptations or pathological drive
% Generated: 2026-06-15T15:02:56Z

@article{pmid35478247,
  title = {Chromatin accessibility profiling by ATAC-seq.},
  author = {Grandi Fiorella C; Modi Hailey; Kampman Lucas; Corces M Ryan},
  journal = {Nature protocols},
  year = {2022},
  pmid = {35478247},
  doi = {10.1038/s41596-022-00692-9},
}

@article{pmid35478247,
  title = {Chromatin accessibility profiling by ATAC-seq.},
  journal = {Nature protocols},
  year = {2022},
  pmid = {35478247},
  doi = {10.1038/s41596-022-00692-9},
}

@article{pmid28846090,
  title = {An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues.},
  author = {Corces M Ryan; Trevino Alexandro E; Hamilton Emily G; Greenside Peyton G; Sinnott-Armstrong Nicholas A; Vesuna Sam; Satpathy Ansuman T; Rubin Adam J; Montine Kathleen S; Wu Beijing; Kathiria Arwa; Cho Seung Woo; Mumbach Maxwell R; Carter Ava C; Kasowski Maya; Orloff Lisa A; Risca Viviana I; Kundaje Anshul; Khavari Paul A; Montine Thomas J; Greenleaf William J; Chang Howard Y},
  journal = {Nature methods},
  year = {2017},
  pmid = {28846090},
  doi = {10.1038/nmeth.4396},
}

@article{pmid28846090,
  title = {An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues.},
  journal = {Nature methods},
  year = {2017},
  pmid = {28846090},
  doi = {10.1038/nmeth.4396},
}

@article{pmid25559105,
  title = {ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide.},
  journal = {Current protocols in molecular biology},
  year = {2016},
  pmid = {25559105},
  doi = {10.1002/0471142727.mb2129s109},
}

@article{pmid25559105,
  title = {ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide.},
  author = {Buenrostro, Wu, Chang, Greenleaf},
  journal = {Current protocols in molecular biology},
  year = {2016},
  pmid = {25559105},
}

@article{pmid26083756,
  title = {Single-cell chromatin accessibility reveals principles of regulatory variation.},
  journal = {Nature},
  year = {2015},
  pmid = {26083756},
  doi = {10.1038/nature14590},
}

@article{pmid26083756,
  title = {Single-cell chromatin accessibility reveals principles of regulatory variation.},
  author = {Buenrostro, Wu, Litzenburger, Ruff, Gonzales et al.},
  journal = {Nature},
  year = {2015},
  pmid = {26083756},
}

@article{pmid24097267,
  title = {Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position.},
  author = {Buenrostro, Giresi, Zaba, Chang, Greenleaf},
  journal = {Nature methods},
  year = {2014},
  pmid = {24097267},
}

@article{pmid24097267,
  title = {Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position.},
  author = {Buenrostro Jason D; Giresi Paul G; Zaba Lisa C; Chang Howard Y; Greenleaf William J},
  journal = {Nature methods},
  year = {2013},
  pmid = {24097267},
  doi = {10.1038/nmeth.2688},
}