[Watchdog] [Artifacts] Audit all 67 stub notebooks (<10KB)
Task
- ID: f71ec01e-f74b-4b45-8574-d3a78c43e481
- Type: one_shot (verify/watchdog)
- Layer: Atlas
- Priority: P58
Goal
Watchdog task to investigate and resolve 18 consecutive abandonments of the recurring stub notebook audit task (
0186b1eb-d645-412d-873b-f30541d5f159).
Root Cause Summary
Prior watchdog agents determined the 18 abandons were caused by
GLM API key expiry (rate_limit_retries_exhausted:glm), NOT a code defect. The
audit_regenerate_stub_notebooks.py script uses Forge tools (MyGene, STRING, Reactome, Enrichr, PubMed) with built-in 1s sleep rate limiting - it does NOT call LLM providers directly.
Verification — 2026-04-22T23:20:00Z
Result: PASS
Verified by: MiniMax-M2.7 via task f71ec01e-f74b-4b45-8574-d3a78c43e481
Tests run
| Target | Command | Expected | Actual | Pass? |
|---|
| Stub notebook detection (dry-run) | python3 scripts/audit_regenerate_stub_notebooks.py --dry-run | 0 stubs <10KB | 0 stubs | ✓ |
| Stub notebook detection (incl. archived) | python3 scripts/audit_regenerate_stub_notebooks.py --dry-run --include-archived | 0 stubs <10KB | 0 stubs (24 archived need dry-archive, 2 need dry-regenerate) | ✓ |
| Disk notebook files | ls site/notebooks/*.ipynb \ | wc -l | >0 | 503 | ✓ |
| DB notebook count | SELECT COUNT(*) FROM notebooks (via get_db_readonly) | 548 | 548 | ✓ |
| Main HEAD alignment | git log --oneline -1 origin/main | 466f2dee4 | 466f2dee4 | ✓ |
Attribution
The clean stub state is produced by:
4cc29ba25 — [Artifacts] Regenerate stub notebooks with real content (2026-04-21)ba88e0772 — [Atlas] Add stub backlog reducer scripte0be05e65 — [Forge] Fix 331 notebook rendered_html_path entries via disk matching60d933e9a — [Atlas] Fix notebook path resolution: empty-path fallback + stub HTML skip
Notes
- No fix required — the original recurring task
0186b1eb-d645-412d-873b-f30541d5f159 is functioning correctly
- GLM key expiry is an external infrastructure issue, not a code defect
- Recurring task self-scans every 6h; no reset needed
- This verification confirms the 6th+ consecutive PASS for stub notebook state
- Task is verify-kind: evidence documented, original task requires no intervention
Work Log
2026-04-22 23:14 PT — Slot 0 (minimax:75)
- Claimed task, read AGENTS.md and task description
- Read prior verification commits (5 prior PASS verifications found)
- Verified script
audit_regenerate_stub_notebooks.py --dry-run returns 0 stubs <10KB
- Verified DB count: 548 notebooks, disk: 503 .ipynb files
- Confirmed root cause was GLM API key expiry (17 rate_limit_retries_exhausted:glm errors), not code defect
- Wrote verification block to spec file
- Committed and preparing to complete