Semantic Diff — protein_design-011c7116-97c0-4805-a665-436a6c41715a v6→v4
Summary: score 0.880→0.750 (-0.130); 4 fields changed; 8 metadata keys changed
Changes
| Field | Before | After | Interpretation |
|---|---|---|---|
| title | TREM2 Ectodomain Variant — Binding Optimized | TREM2 Ectodomain Variant — AlphaFold Base | |
| quality_score | 0.88 | 0.75 | |
| version_tag | binding-opt | None | |
| changelog | Interface mutations to enhance Aβ binding while maintaining stability gains | None | |
| metadata.binding_affinity | {'kd_nm': 120, 'target': 'Aβ oligomers'} | {'kd_nm': 850, 'target': 'Aβ oligomers'} | |
| metadata.delta_G_kcal | -1.8 | None | |
| metadata.design_rationale | Interface residue optimization for enhanced Aβ oligomer recognition. Slight stability trade-off accepted for 6.5x binding improvement. | Wild-type ectodomain structure as baseline for optimization | |
| metadata.method | rosetta_interface_design | alphafold | |
| metadata.mutations | ['T96S', 'K186R', 'A192V', 'H157Y', 'R62W'] | [] | |
| metadata.plddt_score | 0.9 | 0.89 | |
| metadata.predicted_stability | 0.88 | 0.72 | |
| metadata.sequence | MEPLRPPWHLLLLCLCLLSLLPSGFSTEETVSTGPLEKRQLLTRGNIFSQTENLRQGEQDSFPIYVYSLGLGGSPSVQCNVRQGLSWTHEFTVTYTDLVPNGGSCSNFSSMRYHWSRRCSVRVYTLSITGITPSLRYHMKQQGKLLVTLPQQAVQDFPLWLQVNFSDKKLLEVPMQGISNSSSVYFVSLHSVVKMADVRGLVWGWMNVTDQSAQIVTFTTQADKPCKFPMYRRNFTSIDFQILVPVGCVSSGKEKEKMLRTVYYDEVMDRGPRDRV | MEPLRPPWHLLLLCLCLLSLLPSGFSTEETVSTGPLEKRQLLTRGNIFSQTENLRQGEQDSFPIYVYSLGLGGSPSVQCNVRQGLSWTHEFTVTYTDLVPNGGSCSNFSSMRYHRSRRCSVRVYTLSITGITPSLRYHMKQQGKLLVTLPQQAVQDFPLWLQVNFSDKKLLEVPMQGISNTSSVYFVSLHSVVKMADVRGLVWGWMNVTDQSAQIVTFTTQADKPCKFPMYRNNFTSIDFQILVPVGCVSSGKEKEKMLRTVYVDEVMDRGPRDRV |
Text Diff
--- v4
+++ v2
@@ -1,14 +1,11 @@
-title: TREM2 Ectodomain Variant — Binding Optimized
-quality_score: 0.88
+title: TREM2 Ectodomain Variant — AlphaFold Base
+quality_score: 0.75
lifecycle_state: active
-version_tag: binding-opt
-changelog: Interface mutations to enhance Aβ binding while maintaining stability gains
-metadata.binding_affinity: {'kd_nm': 120, 'target': 'Aβ oligomers'}
-metadata.delta_G_kcal: -1.8
-metadata.design_rationale: Interface residue optimization for enhanced Aβ oligomer recognition. Slight stability trade-off accepted for 6.5x binding improvement.
-metadata.method: rosetta_interface_design
-metadata.mutations: ['T96S', 'K186R', 'A192V', 'H157Y', 'R62W']
-metadata.plddt_score: 0.9
-metadata.predicted_stability: 0.88
-metadata.sequence: MEPLRPPWHLLLLCLCLLSLLPSGFSTEETVSTGPLEKRQLLTRGNIFSQTENLRQGEQDSFPIYVYSLGLGGSPSVQCNVRQGLSWTHEFTVTYTDLVPNGGSCSNFSSMRYHWSRRCSVRVYTLSITGITPSLRYHMKQQGKLLVTLPQQAVQDFPLWLQVNFSDKKLLEVPMQGISNSSSVYFVSLHSVVKMADVRGLVWGWMNVTDQSAQIVTFTTQADKPCKFPMYRRNFTSIDFQILVPVGCVSSGKEKEKMLRTVYYDEVMDRGPRDRV
+metadata.binding_affinity: {'kd_nm': 850, 'target': 'Aβ oligomers'}
+metadata.design_rationale: Wild-type ectodomain structure as baseline for optimization
+metadata.method: alphafold
+metadata.mutations: []
+metadata.plddt_score: 0.89
+metadata.predicted_stability: 0.72
+metadata.sequence: MEPLRPPWHLLLLCLCLLSLLPSGFSTEETVSTGPLEKRQLLTRGNIFSQTENLRQGEQDSFPIYVYSLGLGGSPSVQCNVRQGLSWTHEFTVTYTDLVPNGGSCSNFSSMRYHRSRRCSVRVYTLSITGITPSLRYHMKQQGKLLVTLPQQAVQDFPLWLQVNFSDKKLLEVPMQGISNTSSVYFVSLHSVVKMADVRGLVWGWMNVTDQSAQIVTFTTQADKPCKFPMYRNNFTSIDFQILVPVGCVSSGKEKEKMLRTVYVDEVMDRGPRDRV
metadata.uniprot_id: Q9NZC2