Semantic Diff — protein_design-0d9d3a27-4764-4150-8fdc-031c4e82a9b4 v6→v4
Summary: 2 fields changed; 11 metadata keys changed
Changes
| Field | Before | After | Interpretation |
|---|---|---|---|
| version_tag | binding-opt | None | |
| changelog | Interface mutations to enhance Aβ binding while maintaining stability gains | None | |
| metadata.binding_affinity | {'kd_nm': 120, 'target': 'Aβ oligomers'} | {'kd_nm': 850, 'target': 'Aβ oligomers'} | |
| metadata.binding_improvement_fold | 7.08 | None | |
| metadata.delta_G_kcal | -1.8 | None | |
| metadata.design_rationale | Interface residue optimization for enhanced Aβ oligomer recognition. Slight stability trade-off accepted for 6.5x binding improvement. | Wild-type ectodomain structure as baseline for optimization | |
| metadata.method | rosetta_interface_design | alphafold | |
| metadata.mutations | ['T96S', 'K186R', 'A192V', 'H157Y', 'R62W'] | [] | |
| metadata.plddt_score | 0.87 | 0.89 | |
| metadata.predicted_stability | 0.88 | 0.72 | |
| metadata.rosetta_energy | -43.8 | None | |
| metadata.sequence | MEPLRGLLVLAGLAFWHLRGGWAPGALLLWSLGPSLGRAHSGPASCQLLACSLSTLAALCASCVLWVVSTALLFLLLLSLAALQLWQWGVAPSRQGPA | MEPLRGLLVLAGLAFWHLRGGWAPGALLLWSLGPSLGRAHSGPASCQLLACSLTTLAALCASCVLVVVSTALLFLLLLSLAALQLWQRGVAPTLQGPA | |
| metadata.structure_pdb_url | None | https://alphafold.ebi.ac.uk/files/AF-Q9NZC2-F1-model_v4.pdb |
Text Diff
--- v4
+++ v2
@@ -1,17 +1,13 @@
title: TREM2 Ectodomain Variant — AlphaFold Base
quality_score: 0.75
lifecycle_state: active
-version_tag: binding-opt
-changelog: Interface mutations to enhance Aβ binding while maintaining stability gains
-metadata.binding_affinity: {'kd_nm': 120, 'target': 'Aβ oligomers'}
-metadata.binding_improvement_fold: 7.08
-metadata.delta_G_kcal: -1.8
-metadata.design_rationale: Interface residue optimization for enhanced Aβ oligomer recognition. Slight stability trade-off accepted for 6.5x binding improvement.
-metadata.method: rosetta_interface_design
-metadata.mutations: ['T96S', 'K186R', 'A192V', 'H157Y', 'R62W']
-metadata.plddt_score: 0.87
-metadata.predicted_stability: 0.88
-metadata.rosetta_energy: -43.8
-metadata.sequence: MEPLRGLLVLAGLAFWHLRGGWAPGALLLWSLGPSLGRAHSGPASCQLLACSLSTLAALCASCVLWVVSTALLFLLLLSLAALQLWQWGVAPSRQGPA
-metadata.structure_pdb_url: None
+metadata.binding_affinity: {'kd_nm': 850, 'target': 'Aβ oligomers'}
+metadata.design_rationale: Wild-type ectodomain structure as baseline for optimization
+metadata.method: alphafold
+metadata.mutations: []
+metadata.plddt_score: 0.89
+metadata.predicted_stability: 0.72
+metadata.sequence: MEPLRGLLVLAGLAFWHLRGGWAPGALLLWSLGPSLGRAHSGPASCQLLACSLTTLAALCASCVLVVVSTALLFLLLLSLAALQLWQRGVAPTLQGPA
+metadata.structure_pdb_url: https://alphafold.ebi.ac.uk/files/AF-Q9NZC2-F1-model_v4.pdb
metadata.uniprot_id: Q9NZC2
+metadata.visualization_url: None