ID: h-4805632af8
Hypothesis

H2: Perforant Path Synapse Loss via Early Complement Cascade Activation

H2: Perforant Path Synapse Loss via Early Complement Cascade Activation starts from the claim that modulating C1QA, C1QB, C3, ITGAM within the disease context of neurodegeneration can redirect a disease-relevant process.
🧬 C1QA, C1QB, C3, ITGAM🩺 neurodegeneration🎯 Composite 61%💱 $0.56▼9.0%proposed
EvidencePending (0%)📖 0 cit🗣 1 debates 3 support 3 oppose
✓ All Quality Gates Passed
Mechanistic 0.55 (15%) Evidence 0.62 (15%) Novelty 0.58 (12%) Feasibility 0.58 (12%) Impact 0.65 (12%) Druggability 0.60 (10%) Safety 0.62 (8%) Competition 0.65 (6%) Data Avail. 0.68 (5%) Reproducible 0.58 (5%) KG Connect 0.50 (8%) 0.610 composite

🧪 Overview

Mechanistic Overview


H2: Perforant Path Synapse Loss via Early Complement Cascade Activation starts from the claim that modulating C1QA, C1QB, C3, ITGAM within the disease context of neurodegeneration can redirect a disease-relevant process. The original description reads: "## Mechanistic Overview H2: Perforant Path Synapse Loss via Early Complement Cascade Activation starts from the claim that modulating C1QA, C1QB, C3, ITGAM within the disease context of neurodegeneration can redirect a disease-relevant process. The original description reads: "## Mechanistic Overview H2: Perforant Path Synapse Loss via Early Complement Cascade Activation starts from the claim that Layer II synapses onto dentate granule cells are selectively dismantled via C1q/C3–dependent complement pathways. Soluble tau oligomers binding to neuronal NMDA receptors trigger microglial phagocytosis through CR3. Anti-C1q antibodies are in Phase I development. However, the mechanistic chain from tau oligomers to complement activation is underspecified, and C1q deposition is observed in normal aging and non-AD tauopathies, suggesting it may be a non-specific response to neuronal stress.

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🧬 Mechanism

🧬 Curated Mechanism Pathway

Curated pathway from expert analysis

flowchart TD
    A["Target Gene: C1QA C1QB C3 ITGAM"]
    B["Molecular Mechanism<br/>Pathway Activation"]
    C["Cellular Phenotype<br/>Neuronal / Glial Response"]
    D["Network Effect<br/>Circuit-Level Consequence"]
    E["Disease Relevance<br/>Neurodegeneration Link"]
    A --> B --> C --> D --> E
    style A fill:#1a237e,stroke:#4fc3f7,color:#4fc3f7
    style E fill:#1b5e20,stroke:#81c784,color:#81c784

⚖️ Evidence

⚖️ Evidence Matrix3 supports3 contradicts
Supports
C1q and C3 accumulate at excitatory synapses in postmortem EC at Braak I-II
Supports
Soluble tau oligomers directly activate complement in early AD mouse models
Supports
Layer II neurons express unusually high levels of GluN2B-containing NMDA receptors
Contradicts
Mechanistic chain tau oligomers → NMDA → complement activation is underspecified
Contradicts
C1q deposition observed in normal aging and non-AD tauopathies
Contradicts
Complement may be protective refinement response rather than driver of pathology
📖 Linked Papers

No linked papers recorded for this hypothesis yet.

🏥 Translation

🧬 3D Protein Structure — C1QA

🧬 PDB 1PK6 Click to expand

Experimental structure from RCSB PDB | Powered by Mol*

🧠 GTEx v10 Brain ExpressionJSON

Median TPM across 13 brain regions for C1QA, C1QB, C3, ITGAM from GTEx v10.

Spinal cord cervical c-174.7 Substantia nigra38.2median TPM (GTEx v10)

💉 Clinical Trials

No clinical trials data linked to this hypothesis yet.

No curated ClinVar variants loaded for this hypothesis.

Run scripts/backfill_clinvar_variants.py to fetch P/LP/VUS variants.

🔍 Search ClinVar for C1QA, C1QB, C3, ITGAM →

No DepMap CRISPR Chronos data found for C1QA, C1QB, C3, ITGAM.

Run python3 scripts/backfill_hypothesis_depmap.py to populate.

💰 Estimated Development
Cost
$0
Timeline

🏆 Tournament

🏆 Arenas / Elo

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📊 Market Indicators

7d Trend
Stable
7d Momentum
▼ 1.1%
Volatility
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0.0037
Events (7d)
4
Price History
▼9.0%

💾 Resource Usage

LLM Tokens
30,918
$0.0928
Total Cost
$0.0928

🔮 Predictions

🔎 Predictions vs Observations2 predictions · 0 with recorded observations
PredictionPredictedObservedStatusConf
IF anti-C1q monoclonal antibody (e.g., ANX005 or similar) is administered to P301S tauopathy mice at 6 months of age for 12 weeks, THEN we will observe a significant reduction (≥40%) in Layer II perfo≥40% preservation of PSD-95+ synapses in the dentate gyrus molecular layer as measured by stereology after treatment completion— no observation —pending0.58
IF we stratify early-stage Alzheimer's disease patients (MMSE 20-26) by baseline CSF C1QB levels into high versus low groups using a validated cutoff (e.g., 75th percentile), THEN the high C1QB group High C1QB group exhibits ≥1.5× faster annualized entorhinal cortex thickness loss and ≥0.5 SD greater memory decline per year relative to low C1QB group, after — no observation —pending0.52
🔮 Falsifiable Predictions (2)
pendingconf 58%
IF anti-C1q monoclonal antibody (e.g., ANX005 or similar) is administered to P301S tauopathy mice at 6 months of age for 12 weeks, THEN we will observe a significant reduction (≥40%) in Layer II perforant path synapse density loss compared to vehicle-treated controls.
Predicted outcome: ≥40% preservation of PSD-95+ synapses in the dentate gyrus molecular layer as measured by stereology after treatment completion
Falsification: Synaptic density in the anti-C1q-treated group is statistically indistinguishable from vehicle controls (p>0.05), despite confirmed ≥80% C1q protein depletion at the synapse, indicating C1q activation
pendingconf 52%
IF we stratify early-stage Alzheimer's disease patients (MMSE 20-26) by baseline CSF C1QB levels into high versus low groups using a validated cutoff (e.g., 75th percentile), THEN the high C1QB group will demonstrate accelerated entorhinal cortex atrophy and faster composite memory decline over 36 m
Predicted outcome: High C1QB group exhibits ≥1.5× faster annualized entorhinal cortex thickness loss and ≥0.5 SD greater memory decline per year relative to low C1QB gro
Falsification: No significant difference in entorhinal cortex atrophy rate or cognitive decline between high and low C1QB groups (p>0.05) after correction for multiple comparisons, indicating that C1q elevation is a

📖 References (3)

  1. Epitope-associated and specificity-focused features of EV71-neutralizing antibody repertoires from plasmablasts of infected children.
    ["Arthur Huang et al.. Nature communications (2017)
  2. The Ventral Visual Pathway Represents Animal Appearance over Animacy, Unlike Human Behavior and Deep Neural Networks.
    ["Bracci et al.. The Journal of neuroscience : the official journal of the Society for Neuroscience (2019)
  3. Development of a Mobile App on Contraceptive Options for Young African American and Latina Women.
    ["Akinola et al.. Health education & behavior : the official publication of the Society for Public Health Education (2019)
Metadatasource: v1_phase_c_backfill · origin_type: debate_synthesizer
sourcev1_phase_c_backfill
origin_typedebate_synthesizer
_schema_version1
📊 Evidence Profile
Evidence Balance
+0%
Certainty
0%
Debates
0
Incoming
0
Outgoing
0
0 supporting 0 contradicting 0 neutral
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