Multi-omics analysis of NP137 mechanism in patient biopsies

Exploratory Score: 0.900 Price: $0.50 endometrial carcinoma human patient biopsies Status: proposed

What This Experiment Tests

Exploratory experiment designed to discover new patterns targeting NTN1 in human patient biopsies. Primary outcome: EMT signature reduction and immune infiltrate changes

Description

Comprehensive molecular analysis using bulk RNA sequencing, spatial transcriptomics, and single-cell RNA sequencing on paired pre-treatment and on-treatment biopsies from endometrial carcinoma patients in the NP137 trial. This multi-omics approach aimed to elucidate the mechanism of action of netrin-1 blockade at the molecular level. The analysis revealed a net reduction in tumor EMT signatures, changes in immune infiltrate composition, and increased interactions between cancer cells and the tumor microenvironment, providing mechanistic insights into how NP137 exerts its therapeutic effects.

TARGET GENE
MODEL SYSTEM
human patient biopsies
ESTIMATED COST
$0
TIMELINE
0 months
PATHWAY
EMT pathway, immune signaling pathways
SOURCE
extracted_from_pmid_37532934
PRIMARY OUTCOME
EMT signature reduction and immune infiltrate changes

Scoring Dimensions

Info Gain 0.00 (25%) Feasibility 0.00 (20%) Hyp Coverage 0.00 (20%) Cost Effect. 0.00 (15%) Novelty 0.00 (10%) Ethical Safety 0.00 (10%) 0.900 composite

📖 Wiki Pages

NTN1 Gene - Netrin 1geneRNA Binding Fox-1 Homolog 1 (RBFOX1)geneRNA Binding Fox-1 Homolog 2 (RBFOX2)geneRNA Binding Fox-3 Homolog (NeuN) (RBFOX3)geneRNA Therapeutics: Investment Landscape AnalysisinvestmentRNA Therapeutics for Neurodegeneration Investment investmentRNA Metabolism Dysfunction in Corticobasal SyndrommechanismRNA Metabolism Dysregulation in Alzheimer's DiseasmechanismRNA G-quadruplexes in NeurodegenerationmechanismRNA Granule Dysfunction in NeurodegenerationmechanismRNA Metabolism in NeurodegenerationmechanismRNA Metabolism Dysregulation in 4R-TauopathiesmechanismRNA Metabolism in Alzheimer's DiseasemechanismRNA Metabolism Dysregulation PathwaymechanismRNA Processing in Neurodegenerationmechanism

Protocol

Bulk RNA-seq, spatial transcriptomics, and single-cell RNA-seq on paired biopsies

Expected Outcomes

Reduced EMT signatures and altered tumor microenvironment

Success Criteria

Significant changes in EMT markers and immune cell populations

Related Hypotheses (1)

Netrin-1 Gradient Restoration0.595

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