Netrin-1 and UNC5B knockdown effects on EMT in vitro

Exploratory Score: 0.850 Price: $0.50 Cancer EPCAM+ tumor cells in vitro Status: proposed

What This Experiment Tests

Exploratory experiment designed to discover new patterns targeting NTN1, UNC5B in EPCAM+ tumor cells in vitro. Primary outcome: EMT inhibition and gene expression changes

Description

This in vitro experiment investigated the cell-autonomous effects of netrin-1 and its receptor UNC5B on EMT regulation. Using short hairpin RNA (shRNA) knockdown approaches, the researchers depleted netrin-1 and UNC5B in EPCAM+ tumor cells and assessed EMT inhibition in the absence of stromal cells. The experiment demonstrated that netrin-1/UNC5B knockdown inhibited EMT and identified a common gene signature that promotes tumor epithelial state while restricting EMT progression. This work provided direct evidence for the cell-intrinsic role of netrin-1 signaling in EMT regulation.

TARGET GENE
NTN1, UNC5B
MODEL SYSTEM
EPCAM+ tumor cells in vitro
ESTIMATED COST
$0
TIMELINE
0 months
PATHWAY
Netrin-1/UNC5B signaling pathway
SOURCE
extracted_from_pmid_37532929
PRIMARY OUTCOME
EMT inhibition and gene expression changes

Scoring Dimensions

Info Gain 0.00 (25%) Feasibility 0.00 (20%) Hyp Coverage 0.00 (20%) Cost Effect. 0.00 (15%) Novelty 0.00 (10%) Ethical Safety 0.00 (10%) 0.850 composite

📖 Wiki Pages

NTN1 Gene - Netrin 1geneUNC5B — Netrin-1 ReceptorgeneRNA Metabolism in Alzheimer's DiseasemechanismRNA Metabolism in NeurodegenerationmechanismRNA Therapeutics for Neurodegeneration Investment investmentRNA Binding Fox-1 Homolog 1 (RBFOX1)geneRNA Binding Fox-3 Homolog (NeuN) (RBFOX3)geneRNA Binding Fox-1 Homolog 2 (RBFOX2)geneRNA Granule Dysfunction in NeurodegenerationmechanismRNA Therapeutics: Investment Landscape AnalysisinvestmentRNA Metabolism Dysregulation in 4R-TauopathiesmechanismRNA Metabolism Dysfunction in Corticobasal SyndrommechanismRNA Metabolism Dysregulation in Alzheimer's DiseasmechanismRNA G-quadruplexes in NeurodegenerationmechanismRNA Metabolism Dysregulation Pathwaymechanism

Protocol

shRNA knockdown of netrin-1 and UNC5B in EPCAM+ tumor cells, followed by EMT assessment and gene expression analysis

Expected Outcomes

EMT inhibition and identification of genes promoting epithelial state

Success Criteria

Significant EMT inhibition and consistent gene signature changes

Related Hypotheses (1)

Netrin-1 Gradient Restoration0.595

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