gene

BDNF

Entity Detail — Knowledge Graph Node

Understanding Entity Pages

This page aggregates everything SciDEX knows about BDNF: its mechanistic relationships (Knowledge Graph edges), hypotheses targeting it, analyses mentioning it, and supporting scientific papers. The interactive graph below shows its immediate neighbors. All content is AI-synthesized from peer-reviewed literature.

5378Connections
3Hypotheses
13Analyses
50Outgoing
50Incoming

Summary

Brain-Derived Neurotrophic Factor (BDNF) is the most abundant neurotrophin in the brain, essential for neuronal survival, synaptic plasticity, and memory formation. BDNF signals through TrkB receptor to activate PI3K/Akt, MAPK/ERK, and PLCgamma pathways, promoting long-term potentiation (LTP) and dendritic growth. BDNF levels decline in Alzheimer's, Parkinson's, Huntington's, and major depression. The Val66Met polymorphism (rs6265) impairs activity-dependent BDNF secretion and is associated with reduced hippocampal volume and episodic memory deficits. Exercise robustly increases BDNF levels, providing a mechanistic link between physical activity and cognitive resilience. Therapeutic strategies include BDNF mimetics, TrkB agonists, and lifestyle interventions to boost endogenous BDNF.

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🧬 Gene Info
Gene SymbolBDNF
Full NameBrain-Derived Neurotrophic Factor
Chromosome11p14.1
Protein FamilyNeurotrophin family
Protein TypeLigand
Target ClassLigand
FunctionProtein replacement therapy or small molecule mimetic
Mechanism of ActionProtein replacement therapy or small molecule mimetic
Primary ExpressionSecreted, Synaptic vesicles
DruggabilityLow (0.29)
Clinical StagePhase II
Gene TypeProtein-coding gene
PathwaysAkt, Apoptosis, Autophagy, Cell Cycle, Cholesterol
UniProt IDP23560
NCBI Gene ID627
Ensembl IDENSG00000176697
OMIM113505
GeneCardsBDNF
Human Protein AtlasBDNF
Associated DiseasesADHD, ALS, ANXIETY, Addiction, Aging
Known Drugs/CompoundsRAPAMYCIN, CURCUMIN, METFORMIN, KETAMINE, ANTIDEPRESSANTS, curcumin
InteractionsCHR2, GLP1R, IL18BP, CALCA, GDNF, SYN3
SciDEX TargetView Target Profile (4 clinical trials)
SciDEX HypothesesHippocampal CA3-CA1 synaptic rescue via DHHC2-medi
Hippocampal CA3-CA1 circuit rescue via neurogenesi
Neuroplasticity-Enhanced Learning Hypothesis
KG Connections4734 knowledge graph edges
DatabasesGeneCardsHPASTRING
🧬 3D Structure: BDNF — PDB 1B8M Click to expand

Experimental structure from RCSB PDB | Powered by Mol*

Wiki Pages (21)

Knowledge base pages for this entity

Canonical Page

BDNF Gene

gene · 1615 words

cbs-psp-daily-action-plan

therapeutic · 30834 words

Personalized Treatment Plan — Atypical Parkinsonism (CBS/PSP)

therapeutic · 15794 words

Progressive Supranuclear Palsy (PSP)

disease · 12907 words

Corticobasal Syndrome (CBS)

disease · 11374 words

Novel Therapy Index

idea · 10647 words

Pathway Diagram

graph TD
    subgraph Signaling["Signaling"]
        BDNF["BDNF"] -->|"activates"| TRKB["TRKB"]
        BDNF["BDNF"] -->|"activates"| Als["Als"]
        BDNF["BDNF"] -->|"activates"| Aging["Aging"]
        BDNF["BDNF"] -->|"activates"| Stroke["Stroke"]
        BDNF["BDNF"] -.->|"inhibits"| Als_1["Als"]
        BDNF["BDNF"] -->|"activates"| Depression["Depression"]
        BDNF["BDNF"] -->|"activates"| Synaptic_Plasticity["Synaptic Plasticity"]
        BDNF["BDNF"] -->|"activates"| Neurogenesis["Neurogenesis"]
        CREB["CREB"] -->|"activates"| BDNF["BDNF"]
        TRKB_3["TRKB"] -->|"activates"| BDNF["BDNF"]
        TNF["TNF"] -->|"activates"| BDNF["BDNF"]
        EXERCISE["EXERCISE"] -->|"activates"| BDNF["BDNF"]
        OXIDATIVE_STRESS["OXIDATIVE STRESS"] -->|"activates"| BDNF["BDNF"]
    end
    subgraph Pathology["Pathology"]
        BDNF["BDNF"] -->|"associated with"| Als_2["Als"]
        APP["APP"] -->|"associated with"| BDNF["BDNF"]
    end
    style BDNF fill:#4a1a6b,stroke:#4fc3f7,stroke-width:3px,color:#e0e0e0,font-weight:bold
    style TRKB fill:#006494,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style Als fill:#ef5350,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style Aging fill:#ef5350,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style Stroke fill:#ef5350,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style Als_1 fill:#ef5350,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style Depression fill:#ef5350,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style Synaptic_Plasticity fill:#1b5e20,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style Neurogenesis fill:#1b5e20,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style Als_2 fill:#ef5350,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style CREB fill:#006494,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style TRKB_3 fill:#4a1a6b,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style TNF fill:#4a1a6b,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style EXERCISE fill:#4a1a6b,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style APP fill:#4a1a6b,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
    style OXIDATIVE_STRESS fill:#4a1a6b,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0

Outgoing (3504)

TargetRelationTypeStr
TRKBactivatesprotein1.00
AKTactivatesgene1.00
Alsactivatesdisease1.00
Agingactivatesdisease1.00
Strokeactivatesdisease1.00

Incoming (1874)

SourceRelationTypeStr
TRKBactivatesgene1.00
TNFactivatesgene1.00
APPassociated_withgene1.00
CREBactivatesprotein1.00
EXERCISEactivatesgene1.00

Targeting Hypotheses (3)

Hypotheses where this entity is a therapeutic target

HypothesisScoreDiseaseAnalysis
Hippocampal CA3-CA1 synaptic rescue via DHHC2-mediated PSD95 0.695 Alzheimer's disease Circuit-level neural dynamics in neurode
Hippocampal CA3-CA1 circuit rescue via neurogenesis and syna 0.677 Alzheimer's disease Circuit-level neural dynamics in neurode
Neuroplasticity-Enhanced Learning Hypothesis 0.424 methodology Unable to extract research questions - t

Mentioning Analyses (13)

Scientific analyses that reference this entity

What are the specific circulating factors in exercise-conditioned plasma that me

neurodegeneration | 2026-04-14 | 2 hypotheses Top: 0.589

Why does PGC-1α overexpression paradoxically increase MPTP toxicity despite enha

neurodegeneration | 2026-04-13 | 0 hypotheses

Epigenetic reprogramming in aging neurons

neurodegeneration | 2026-04-04 | 9 hypotheses Top: 0.670

CRISPR-based therapeutic approaches for neurodegenerative diseases

neurodegeneration | 2026-04-03 | 14 hypotheses Top: 0.622

Circuit-level neural dynamics in neurodegeneration

neuroscience | 2026-04-03 | 49 hypotheses Top: 0.709

Related Papers (20)

Scientific publications cited in analyses involving this entity

Title & PMIDAuthorsJournalYearCitations
Antidepressant effects of combined eucommia-gastrodia extract via modulation of [PMID:41921863] Xue L, Pan Z, Liu Y, Gan Q, Liu D, Liu D Brain research bulletin 2026 0
Complementary mechanisms of high-carbohydrate diets and ketogenic diets restore [PMID:41475465] Kwon H, Seo DS, Ahmad Y, Park S, Yoo J, The Journal of nutritional bio 2026 0
TrkB promotes the neuronal secretion of soluble Siglec-2 (CD22) to mitigate micr [PMID:41922794] Shi X, Cai SZ, Chai JL, Xu CY, Zhou BY, Molecular psychiatry 2026 0
The Potential Functions and Beneficial Effects of Melatonin on Cognitive Impairm [PMID:41917799] Li XY, Cheng YZ, Zhang YM, Hu F, Fang SK Brain and behavior 2026 0
Biomarkers for Alzheimer's disease across diverse biological domains: an umbrell [PMID:40680830] Kang J, Son Y, Yim Y, Cho H, Kim J et al J Adv Res 2026 0
Nanotherapeutic potential of Baicalein-encapsulated hUC-MSC exosomes in Alzheime [PMID:41370943] Xu J, He Z, Pan Y, Cao B, Chen G Biomater Adv 2026 0
Zhi-Gan Formula improved insomnia and anxiety comorbidity in a mouse model via P [PMID:41525914] Liu R, Wu Z, Yin Y, Song C, Zhang C et a J Ethnopharmacol 2026 0
Triterpenoid saponins from Platycodon grandiflorus exhibit antidepressant-like e [PMID:41539634] Yoon S, Chun E, Iqbal H, Kim SH, Kim SY J Ethnopharmacol 2026 0
Epigenetic mechanisms and therapeutic innovations in chronic pain-associated neu [PMID:41554641] Zhang K, Zhu S, Xing N, Zhou Z, Chen J e Br J Pharmacol 2026 0
Postbiotics and the gut-brain axis: A mechanistic review on modulating neuroinfl [PMID:41570486] Lahariya R, Anand G, Kumari B, Priyadars J Neuroimmunol 2026 0
miRNA-206 in muscle and central nervous system crosstalk during exercise: A doub [PMID:41571168] Malvandi AM, Gerosa L, Maroni P, Orlando Neurosci Biobehav Rev 2026 0
Experts' narrative review "Mastication, Hippocampal Structure Changes and Cognit [PMID:41576846] Piancino MG Arch Oral Biol 2026 0
Plant-derived bioactive compounds modulate the gut microbiota in Alzheimer's dis [PMID:41678917] Xue D, Hu X, Li R, Sun T, Qian S et al. Phytomedicine 2026 0
Dysregulation of Drp1 and Mfn2 is associated with reduced PSD-95, synaptophysin, [PMID:41932483] Alfateh M, Vasconcelos C, Choker AH, Moh Int J Biol Macromol 2026 0
AICAR improves depression-like behaviors and is associated with hippocampal AMPK [PMID:41932583] Takahashi K, Kurokawa K, Kawaguchi R, Ta Neurochem Int 2026 0
Designed Liquid Crystalline Nanoassemblies From Clinically Validated Polyunsatur [PMID:41937329] Akanchise T, Luo F, Angelov B, Deng Y, A Adv Healthc Mater 2026 0
Single transient exposure to low-frequency low-intensity electrical stimulation [PMID:41942002] Marcotto GS, Borghetti M, Bitraj J, Cava Neuropharmacology 2026 0
Serpina1e mediates the exercise-induced enhancement of hippocampal memory in mal [PMID:41957371] Kim H, Shin S, Han J, Yun K, Kim JS et a Nat Commun 2026 0
Ubiquinol Ameliorates Social Disruption-induced Behavioral Changes via Modulatin [PMID:41962635] Chen CW, Huang BR, Yeh WL, Huang SS, Cha Behav Brain Res 2026 0
Dietary Advanced Glycation End Products Induced Anxiety- and Depression-like Beh [PMID:41962780] Ma T, He Z, Yang G, Cai J, Qin LQ et al. J Nutr Biochem 2026 0