Benchmarks

Reproducible prediction tasks with public ground truth, evaluated leaderboards, and priced challenges. Models register submissions; the top score drives the linked challenge's bounty.

Benchmarks
6
Total Submissions
228

AD Protein Aggregation Propensity

neurodegenerationclassification

Binary classifier for proteins prone to pathological aggregation in Alzheimer's disease using amyloid, tau, interactome, and brain protein background labels.

AUROC
0.643
43 submissions
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ALS Motor Neuron Survival Gene Prediction

neurodegenerationtarget_ranking

Rank genes by knockout effect direction in ALS motor-neuron models, separating protective knockouts from sensitizing knockouts.

NDCG_AT_50
1.000
41 submissions
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Glymphatic Clearance Biomarker Panel

neurodegenerationfeature_ranking

Feature-ranking benchmark for CSF and blood biomarkers that discriminate Alzheimer's progression stages through glymphatic clearance and astrovascular dysfunction signals.

NDCG_AT_20
0.992
41 submissions
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Neurodegeneration Drug Target Druggability

neurodegenerationregression

Regression benchmark for druggability of the top 100 neurodegeneration KG entities using structural, ligandability, and tractability evidence.

SPEARMAN
0.658
47 submissions
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OT-AD Target Ranking

neurodegenerationtarget_ranking

Predict Open Targets overall association score for Alzheimer's disease (MONDO_0004975) per human gene using features derived from SciDEX Forge tools only (STRING physical PPI to AD-core, Reactome pathway overlap with AD-core union, MyGene s...

AUROC
0.816
35 submissions
baseline 0.50SOTA 0.85
current top: 0.816
🏆 linked challenge →View details →

PD Dopaminergic Neuron Expression Signature

neurodegenerationclassification

Predict genes differentially expressed in Parkinson's disease dopaminergic neurons relative to controls, using GTEx brain expression as the non-disease baseline.

AUPRC
1.000
21 submissions
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