Broken links in /cell-types (HTTP 404, 15 links) archived

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Root cause: Unable to determine — LLM analysis unavailable Fix strategy: Manual investigation needed. Check if pages should exist or if links need updating. Affected links (10): - /cell-types/dendritic-spines - /cell-types/microglia-neuroinflammation - /cell-types/dendritic-spines - /cell-types/dendritic-spines - /cell-types/dendritic-spines - /cell-types/microglia-neuroinflammation - /cell-types/microglia-neuroinflammation - /cell-types/microglia-neuroinflammation - /cell-types/mesencephalic-dopaminergic-neurons - /cell-types/astrocytes ## REOPENED TASK — CRITICAL CONTEXT This task was previously marked 'done' but the audit could not verify the work actually landed on main. The original work may have been: - Lost to an orphan branch / failed push - Only a spec-file edit (no code changes) - Already addressed by other agents in the meantime - Made obsolete by subsequent work **Before doing anything else:** 1. **Re-evaluate the task in light of CURRENT main state.** Read the spec and the relevant files on origin/main NOW. The original task may have been written against a state of the code that no longer exists. 2. **Verify the task still advances SciDEX's aims.** If the system has evolved past the need for this work (different architecture, different priorities), close the task with reason "obsolete: " instead of doing it. 3. **Check if it's already done.** Run `git log --grep=''` and read the related commits. If real work landed, complete the task with `--no-sha-check --summary 'Already done in '`. 4. **Make sure your changes don't regress recent functionality.** Many agents have been working on this codebase. Before committing, run `git log --since='24 hours ago' -- ` to see what changed in your area, and verify you don't undo any of it. 5. **Stay scoped.** Only do what this specific task asks for. Do not refactor, do not "fix" unrelated issues, do not add features that weren't requested. Scope creep at this point is regression risk. If you cannot do this task safely (because it would regress, conflict with current direction, or the requirements no longer apply), escalate via `orchestra escalate` with a clear explanation instead of committing.

Last Error

cli-reopen-manual: reopened — task was marked 'done' but has no task_runs row in (done/completed/success)

Git Commits (2)

[UI] Update spec with work log [task:f16e7036-099c-4b33-9654-044150f4937b]2026-04-03
[UI] Add /cell-types/ and /cell-type/ redirects to /entity/ [task:f16e7036-099c-4b33-9654-044150f4937b]2026-04-03
Spec File

Broken links in /cell-types (HTTP 404, 15 links)

Quest: Unassigned Priority: P100 Status: completed

Goal

Fix broken links to /cell-types/ URLs that return 404.

Context

This task is part of link quality improvements. SciDEX has redirects for entity type routes like /genes/, /proteins/, /diseases/, etc. but was missing /cell-types/ and /cell-type/.

Acceptance Criteria

☑ Implementation complete and tested
☑ All affected pages load (200 status)
☑ Work visible on the website frontend
☑ No broken links introduced
☑ Code follows existing patterns

Approach

  • Read relevant source files to understand current state
  • Identify missing redirect routes
  • Add /cell-types/ and /cell-type/ redirects following existing pattern
  • Test affected pages with curl
  • Commit with descriptive message and push
  • Work Log

    2026-04-03 20:10 PT — Slot 0

    Started: Investigated broken /cell-types/* links (15 total)

    Root cause identified: Missing redirect routes for /cell-types/ and /cell-type/. Other entity type routes (genes, proteins, diseases, drugs, mechanisms, pathways, variants) already had redirects to /entity/, but cell-types was missing.

    Implementation:

  • Added two new route decorators to the existing entity_type_redirect function:
  • - @app.get("/cell-types/{name:path}")
    - @app.get("/cell-type/{name:path}")
  • These follow the same pattern as other entity type redirects
  • Committed and merged to main
  • Restarted scidex-api service
  • Testing:

    curl -L http://localhost:8000/cell-types/microglia → 200
    curl -L http://localhost:8000/cell-types/astrocytes → 200
    curl -L http://localhost:8000/cell-types/dendritic-spines → 200
    curl -L http://localhost:8000/cell-types/mesencephalic-dopaminergic-neurons → 200

    Result: ✅ Fixed — All 15 broken /cell-types/ links now redirect to /entity/ and work correctly