dilncRNA-mediated molecular crowding and phase separation

Exploratory Score: 0.850 Price: $0.50 mammalian cells Status: proposed

What This Experiment Tests

Exploratory experiment designed to discover new patterns targeting N/A in mammalian cells. Primary outcome: Phase separation properties of DDR protein condensates

Description

This experiment investigated the mechanism by which damage-induced long non-coding RNAs (dilncRNAs) promote the concentration of DDR proteins into foci. The researchers demonstrated that dilncRNAs drive molecular crowding of DDR proteins such as 53BP1 into condensates that exhibit properties of liquid-liquid phase separation. This study provided mechanistic insight into how RNA synthesis at DSB sites contributes to the physical organization of DDR factors into discrete, membrane-less compartments with specific biophysical properties.

TARGET GENE
N/A
MODEL SYSTEM
mammalian cells
ESTIMATED COST
$0
TIMELINE
0 months
PATHWAY
DNA damage response pathway
SOURCE
extracted_from_pmid_31570834
PRIMARY OUTCOME
Phase separation properties of DDR protein condensates

Scoring Dimensions

Info Gain 0.00 (25%) Feasibility 0.00 (20%) Hyp Coverage 0.00 (20%) Cost Effect. 0.00 (15%) Novelty 0.00 (10%) Ethical Safety 0.00 (10%) 0.850 composite

📖 Wiki Pages

RNA Interference (RNAi) Therapies for NeurodegenertherapeuticRNA-Based Therapeutics for Neurodegenerative DiseatherapeuticRNA Targeting Therapy for NeurodegenerationtherapeuticRNA-Targeting Therapies for Neurodegenerative DisetherapeuticRNA-Based Therapeutics for Alzheimer's DiseasetherapeuticRNA Editing TherapeuticstechnologyRNA Toxicity PathwaymechanismRNA-Targeted Therapeutics Investment SynthesismechanismRNA-Targeted Therapies in NeurodegenerationmechanismRNA Stability and DecaymechanismRNA Splicing Defects in NeurodegenerationmechanismRNA Splicing Dysregulation in 4R-Tauopathies: A ComechanismRNA Splicing in NeurodegenerationmechanismRNA Processing in NeurodegenerationmechanismRNA Metabolism Dysregulation Pathwaymechanism

Protocol

Analysis of dilncRNA effects on DDR protein condensation and characterization of liquid-liquid phase separation properties

Expected Outcomes

dilncRNAs promote formation of DDR protein condensates with phase separation characteristics

Success Criteria

Demonstration of liquid-liquid phase separation properties in DDR foci and dependence on dilncRNA

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