DSB-induced promoter assembly and RNA polymerase II recruitment

Exploratory Score: 0.850 Price: $0.50 mammalian cells Status: proposed

What This Experiment Tests

Exploratory experiment designed to discover new patterns targeting N/A in mammalian cells. Primary outcome: Assembly of functional RNA polymerase II promoters at DSB sites

Description

This experiment investigated how DNA double-strand breaks (DSBs) lead to the formation of functional transcriptional promoters at damage sites. The researchers analyzed the assembly of RNA polymerase II preinitiation complexes, including MED1 and CDK9, at DSB sites and examined their role in damage-induced long non-coding RNA (dilncRNA) synthesis. The study demonstrated that DSBs can induce the formation of complete transcriptional machinery necessary for RNA synthesis at the break sites.

TARGET GENE
N/A
MODEL SYSTEM
mammalian cells
ESTIMATED COST
$0
TIMELINE
0 months
PATHWAY
DNA damage response pathway
SOURCE
extracted_from_pmid_31570834
PRIMARY OUTCOME
Assembly of functional RNA polymerase II promoters at DSB sites

Scoring Dimensions

Info Gain 0.00 (25%) Feasibility 0.00 (20%) Hyp Coverage 0.00 (20%) Cost Effect. 0.00 (15%) Novelty 0.00 (10%) Ethical Safety 0.00 (10%) 0.850 composite

📖 Wiki Pages

DNA Damage-Accumulating Neurons in NeurodegeneraticellDNA Damage and Repair in NeuronscellDNA Damage Response in Corticobasal SyndromemechanismDNA MethylationentityDNA Damage Repair Deficiency Validation Study in PexperimentCDK9 GenegeneRNA Binding Fox-1 Homolog 1 (RBFOX1)geneRNA Binding Fox-1 Homolog 2 (RBFOX2)geneRNA Binding Fox-3 Homolog (NeuN) (RBFOX3)geneDNA Damage Repair Deficiency Hypothesis in ParkinshypothesisDNA Damage Repair Therapy - Biomarker GuidedideaDNA Damage Repair Investment LandscapeinvestmentRNA Therapeutics: Investment Landscape AnalysisinvestmentRNA Therapeutics for Neurodegeneration Investment investmentDNA Methylation Biomarkers in Neurodegenerationbiomarker

Protocol

Induction of DSBs followed by analysis of RNA polymerase II complex assembly including MED1 and CDK9 recruitment

Expected Outcomes

Formation of complete preinitiation complexes at DSB sites enabling dilncRNA synthesis

Success Criteria

Presence of RNA polymerase II, MED1, and CDK9 at DSB-induced promoters

Related Hypotheses (0)

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