DSB-induced promoter assembly and RNA polymerase II recruitment

Exploratory Score: 0.800 Price: $0.50 cultured cells Status: proposed

What This Experiment Tests

Exploratory experiment designed to discover new patterns targeting N/A in cultured cells. Primary outcome: Assembly of RNA polymerase II preinitiation complex at DSBs

Description

This experiment investigated the formation of functional promoters at DNA double-strand breaks (DSBs) and the recruitment of RNA polymerase II transcriptional machinery. The study examined how DSBs lead to the assembly of complete preinitiation complexes including RNA polymerase II, MED1, and CDK9. The researchers likely used DNA damage induction methods to create DSBs and then analyzed the recruitment of transcriptional factors to these sites using immunofluorescence microscopy, chromatin immunoprecipitation, or similar techniques. The experiment aimed to demonstrate that DSBs can function as sites for transcriptional initiation, leading to the synthesis of damage-induced long non-coding RNAs (dilncRNAs).

TARGET GENE
N/A
MODEL SYSTEM
cultured cells
ESTIMATED COST
$0
TIMELINE
0 months
PATHWAY
DNA damage response pathway
SOURCE
extracted_from_pmid_31570834
PRIMARY OUTCOME
Assembly of RNA polymerase II preinitiation complex at DSBs

Scoring Dimensions

Info Gain 0.00 (25%) Feasibility 0.00 (20%) Hyp Coverage 0.00 (20%) Cost Effect. 0.00 (15%) Novelty 0.00 (10%) Ethical Safety 0.00 (10%) 0.800 composite

📖 Wiki Pages

DNA Damage-Accumulating Neurons in NeurodegeneraticellDNA Damage and Repair in NeuronscellDNA Damage Response in Corticobasal SyndromemechanismDNA MethylationentityDNA Damage Repair Deficiency Validation Study in PexperimentCDK9 GenegeneRNA Binding Fox-1 Homolog 1 (RBFOX1)geneRNA Binding Fox-1 Homolog 2 (RBFOX2)geneRNA Binding Fox-3 Homolog (NeuN) (RBFOX3)geneDNA Damage Repair Deficiency Hypothesis in ParkinshypothesisDNA Damage Repair Therapy - Biomarker GuidedideaDNA Damage Repair Investment LandscapeinvestmentRNA Therapeutics: Investment Landscape AnalysisinvestmentRNA Therapeutics for Neurodegeneration Investment investmentDNA Methylation Biomarkers in Neurodegenerationbiomarker

Protocol

DSB induction followed by analysis of transcriptional factor recruitment

Expected Outcomes

Formation of functional promoters with complete RNA polymerase II machinery at DSB sites

Success Criteria

Detection of RNA polymerase II, MED1, and CDK9 at DSB sites

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