Single-cell RNA sequencing of EMT states in SCC

Exploratory Score: 0.900 Price: $0.50 Skin squamous cell carcinoma Primary mouse model Status: proposed

What This Experiment Tests

Exploratory experiment designed to discover new patterns targeting Multiple EMT-related genes in Primary mouse model. Primary outcome: EMT state classification and gene expression profiles

Description

This experiment used single-cell RNA sequencing to characterize different EMT states in control and NP137-treated squamous cell carcinomas. The analysis revealed the presence of distinct EMT states including epithelial, early hybrid EMT, late hybrid EMT, and full EMT states in control SCC samples. The study demonstrated that NP137 administration prevented cancer cell progression toward late EMT states and helped maintain tumor epithelial states. This comprehensive transcriptomic analysis provided molecular insights into how netrin-1 inhibition affects EMT progression at the single-cell level.

TARGET GENE
Multiple EMT-related genes
MODEL SYSTEM
Primary mouse model
ESTIMATED COST
$0
TIMELINE
0 months
PATHWAY
EMT signaling pathways
SOURCE
extracted_from_pmid_37532929
PRIMARY OUTCOME
EMT state classification and gene expression profiles

Scoring Dimensions

Info Gain 0.00 (25%) Feasibility 0.00 (20%) Hyp Coverage 0.00 (20%) Cost Effect. 0.00 (15%) Novelty 0.00 (10%) Ethical Safety 0.00 (10%) 0.900 composite

📖 Wiki Pages

RNA-Based Therapeutics for Neurodegenerative DiseatherapeuticRNA Binding Fox-1 Homolog 1 (RBFOX1)geneRNA Binding Fox-1 Homolog 2 (RBFOX2)geneRNA Binding Fox-3 Homolog (NeuN) (RBFOX3)geneRNA Therapeutics: Investment Landscape AnalysisinvestmentRNA Therapeutics for Neurodegeneration Investment investmentRNA Metabolism Dysfunction in Corticobasal SyndrommechanismRNA Metabolism Dysregulation in Alzheimer's DiseasmechanismRNA G-quadruplexes in NeurodegenerationmechanismRNA Granule Dysfunction in NeurodegenerationmechanismRNA Metabolism in NeurodegenerationmechanismRNA Metabolism Dysregulation in 4R-TauopathiesmechanismRNA Metabolism in Alzheimer's DiseasemechanismRNA Metabolism Dysregulation PathwaymechanismRNA Processing in Neurodegenerationmechanism

Protocol

Single-cell RNA sequencing of tumor samples from control and NP137-treated mice, followed by computational analysis of EMT states

Expected Outcomes

Prevention of late EMT state progression and maintenance of epithelial states with NP137 treatment

Success Criteria

Clear identification of EMT states and demonstration of NP137 effects on EMT progression

Related Hypotheses (4)

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Cross-Tissue Communication Disruption0.466

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