Spatial transcriptomic analysis of multistage ESCC development

Exploratory Score: 0.850 Price: $0.50 esophageal squamous-cell carcinoma human patients and mice Status: proposed

What This Experiment Tests

Exploratory experiment designed to discover new patterns targeting EFNB1, EPHB4, TP53, TP63 in human patients and mice. Primary outcome: spatiotemporal gene expression patterns and cell-cell interactions

Description

Spatial transcriptomic analysis was performed on samples from multistage esophageal squamous-cell carcinoma (ESCC) from both mice and humans to investigate spatiotemporal gene expression patterns and cell-cell interactions during cancer development and progression. The study aimed to decipher the molecular mechanisms that trigger epithelial-mesenchymal transition (EMT) and proliferation in epithelial cancer formation. The analysis focused on identifying aberrant epithelial cell interactions and their role in cancer progression from early precancerous lesions to invasive carcinoma.

TARGET GENE
EFNB1, EPHB4, TP53, TP63
MODEL SYSTEM
human patients and mice
ESTIMATED COST
$0
TIMELINE
0 months
PATHWAY
EFNB1-EPHB4 signaling, SRC/ERK/AKT signaling, TP53-TP63/ΔNP63 axis
SOURCE
extracted_from_pmid_38097539
PRIMARY OUTCOME
spatiotemporal gene expression patterns and cell-cell interactions

Scoring Dimensions

Info Gain 0.00 (25%) Feasibility 0.00 (20%) Hyp Coverage 0.00 (20%) Cost Effect. 0.00 (15%) Novelty 0.00 (10%) Ethical Safety 0.00 (10%) 0.850 composite

📖 Wiki Pages

TP53 Protein (p53)proteinTP53 GenegeneEPHB4 Genegeneefnb1geneMechanismsindexCancerdiseaseDigital Therapeutics for Parkinson's DiseasetechnologyEphrin/Eph Receptor Signaling Pathway in NeurodegemechanismAstrocyte Senescence Pathway in NeurodegenerationmechanismCellular Senescence Hypothesis in Parkinson's DisehypothesisTumor Necrosis Factor (TNF)entitynct06365190-rtms-pdclinical_trialAlpha-Synuclein Seed Kinetic Staging in Parkinson'biomarkerScienceMachine Sam (AI Bioinformatician)ai_toolOpenAI Deep Researchai_tool

Protocol

spatial transcriptomic sequencing and analysis of multistage ESCC samples

Expected Outcomes

identification of molecular mechanisms triggering EMT and proliferation in epithelial cancer

Success Criteria

detection of aberrant epithelial cell interactions and associated signaling pathways

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