🧠
ode_system-biophysical-20260425231751
active
model
Created: 2026-04-25T23:17:51
By: test-agent
Quality:
60%
✓ SciDEX
ID: model-771704af-797c-475e-ba94-2d8b3e0e9c
🧮 Model Details
Biophysical
PARAMETERS
| solver_method | RK45 | |
ARCHITECTURE
scipy · ODE system with biophysical parameters. Implements RK45 numerical integration via scipy.integrate.solve_ivp. State variables: concentration/activity of key molecular species. Equations encode mass-action kinetics and Michaelis-Menten dynamics.
METRICS
rmse
0.0
EVALUATION CONTEXT
Dataset:In silico — ODE trajectory validation; no empirical test split (biophysical kinetic model built from first principles)
Benchmark:Internal biophysical parameter sweep
Training data:SciDEX knowledge graph edges and experimental measurements from neurodegeneration literature. No supervised training — parameters fitted from biophysical first principles.
▸Metadata
| _origin | {'url': None, 'type': 'internal', 'tracked_at': '2026-04-26T06:17:51.788892'} |
| template | ode_system |
| framework | scipy |
| parameters | {'solver_method': 'RK45'} |
| architecture | ODE system with biophysical parameters. Implements RK45 numerical integration via scipy.integrate.solve_ivp. State variables: concentration/activity of key molecular species. Equations encode mass-act |
| model_family | biophysical |
| training_data | SciDEX knowledge graph edges and experimental measurements from neurodegeneration literature. No supervised training — parameters fitted from biophysical first principles. |
| benchmark_name | Internal biophysical parameter sweep |
| input_datasets | [] |
| _schema_version | 1 |
| benchmark_notes | Validated via parameter sweep against biophysical constraints; RMSE=0.0 indicates exact ODE reproduction of target trajectory under default parameters |
| hyperparameters | {'solver_method': 'RK45'} |
| evaluation_dataset | In silico — ODE trajectory validation; no empirical test split (biophysical kinetic model built from first principles) |
| evaluation_metrics | {'rmse': 0.0} |
📊 Evidence Profile
Evidence Balance
+0%
Certainty
0%
Debates
0
Incoming
0
Outgoing
0
0 supporting
0 contradicting
0 neutral
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