protein

APH-1

Entity Detail — Knowledge Graph Node

Understanding Entity Pages

This page aggregates everything SciDEX knows about APH-1: its mechanistic relationships (Knowledge Graph edges), hypotheses targeting it, analyses mentioning it, and supporting scientific papers. The interactive graph below shows its immediate neighbors. All content is AI-synthesized from peer-reviewed literature.

3Connections
0Hypotheses
0Analyses
0Outgoing
3Incoming
0Experiments

Summary

Anterior Pharynx Defective 1 (APH-1) Protein

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🔬 Protein Info
Gene SymbolAPH
Protein FamilyAPH-1 family (γ-secretase complex)
FunctionAnterior Pharynx Defective 1 (APH-1) is a conserved multipass transmembrane protein that serves as an essential stoichiometric component of the γ-secretase complex[@goutte2002]
Subcellular LocalizationEndoplasmic reticulum, Golgi apparatus, plasma membrane
UniProt IDQ9WVM4 (APH-1A), Q8WW43 (APH-1B)
GeneCardsAPH
Human Protein AtlasAPH
InteractionsNICASTRIN, PRESENILIN, PEN-2
KG Connections3 knowledge graph edges
DatabasesGeneCardsNCBI GeneHPASTRING
🧬 3D Structure Comparison — APH-1 Experimental (PDB) vs Predicted (AlphaFold) — click to expand

📄 Experimental Structure

5A63 — X-ray / Cryo-EM

🔮 AI Predicted Structure

Q9WVM4 — AlphaFold

Left: Experimental structure from RCSB PDB | Right: AI-predicted structure from AlphaFold | Powered by Mol*

Wiki Pages (20)

Knowledge base pages for this entity

Amyloid Cascade Pathway

mechanism · 4149 words

PEN2 Gene

gene · 4033 words

APP Flemish Mutation (APP Flemish)

disease · 3868 words

Amyloid-Beta Aggregation and Plaque Formation

mechanism · 3820 words

Amyloid Precursor Protein (APP)

entity · 3485 words

Pathway Diagram

graph TD
    APH_1(["APH-1"])
    NICASTRIN["NICASTRIN"]
    PRESENILIN(["PRESENILIN"])
    PEN_2(["PEN-2"])

    NICASTRIN -->|"interacts with"| APH_1
    PRESENILIN -->|"interacts with"| APH_1
    PEN_2 -->|"interacts with"| APH_1

    style APH_1 fill:#1a3a4a,stroke:#4fc3f7,stroke-width:3px,color:#fff
    style NICASTRIN fill:#1a237e,stroke:#ce93d8,stroke-width:2px,color:#fff
    style PRESENILIN fill:#1a237e,stroke:#4fc3f7,stroke-width:2px,color:#fff
    style PEN_2 fill:#1a237e,stroke:#4fc3f7,stroke-width:2px,color:#fff

Outgoing (0)

TargetRelationTypeStr
No outgoing edges

Incoming (3)

SourceRelationTypeStr
NICASTRINinteracts_withgene0.50
PRESENILINinteracts_withprotein0.50
PEN-2interacts_withprotein0.50

Targeting Hypotheses (0)

Hypotheses where this entity is a therapeutic target

HypothesisScoreDiseaseAnalysis
No targeting hypotheses

Mentioning Analyses (0)

Scientific analyses that reference this entity

No analyses mention this entity

Experiments (0)

Experimental studies targeting or related to this entity

ExperimentTypeDiseaseScoreFeasibilityModelStatusEst. Cost
No experiments found

Related Papers (0)

Scientific publications cited in analyses involving this entity

Title & PMIDAuthorsJournalYearCitations
No papers found