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ZDHHC13 — Zinc Finger DHHC-Type Containing 13
ZDHHC13 — Zinc Finger DHHC-Type Containing 13
<table class="infobox infobox-gene">
<tr>
<th class="infobox-header" colspan="2">ZDHHC13 — Zinc Finger DHHC-Type Containing 13</th>
</tr>
<tr>
<td class="label">Symbol</td>
<td><strong>ZDHHC13</strong></td>
</tr>
<tr>
<td class="label">Full Name</td>
<td>Zinc Finger DHHC-Type Containing 13</td>
</tr>
<tr>
<td class="label">Aliases</td>
<td>ZDHHC13, DHHC13, HHIP13, LIN-10</td>
</tr>
<tr>
<td class="label">Chromosome</td>
<td>2p22.2</td>
</tr>
<tr>
<td class="label">NCBI Gene</td>
<td>[79683](https://www.ncbi.nlm.nih.gov/gene/79683)</td>
</tr>
<tr>
<td class="label">OMIM</td>
<td>[613214](https://www.omim.org/entry/613214)</td>
</tr>
<tr>
<td class="label">Ensembl</td>
<td>[ENSG00000139350](https://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000139350)</td>
</tr>
<tr>
<td class="label">UniProt</td>
<td>[Q7RTP6](https://www.uniprot.org/uniprot/Q7RTP6)</td>
</tr>
<tr>
<td class="label">Protein Length</td>
<td>512 amino acids</td>
</tr>
<tr>
<td class="label">Molecular Weight</td>
<td>~56 kDa</td>
</tr>
<tr>
<td class="label">Protein Class</td>
<td>Acyltransferase, palmitoyltransferase</td>
</tr>
<tr>
<td class="label">Expression</td>
<td>Cortex, Hippocampus, Cerebellum, Hair follicles</td>
</tr>
<tr>
<td class="label">Associated Diseases</td>
<td><a href="/wiki/als" style="color:#ef9a9a">Als</a></td>
</tr>
<tr>
<td class="label">KG Connections</td>
<td><
ZDHHC13 — Zinc Finger DHHC-Type Containing 13
<table class="infobox infobox-gene">
<tr>
<th class="infobox-header" colspan="2">ZDHHC13 — Zinc Finger DHHC-Type Containing 13</th>
</tr>
<tr>
<td class="label">Symbol</td>
<td><strong>ZDHHC13</strong></td>
</tr>
<tr>
<td class="label">Full Name</td>
<td>Zinc Finger DHHC-Type Containing 13</td>
</tr>
<tr>
<td class="label">Aliases</td>
<td>ZDHHC13, DHHC13, HHIP13, LIN-10</td>
</tr>
<tr>
<td class="label">Chromosome</td>
<td>2p22.2</td>
</tr>
<tr>
<td class="label">NCBI Gene</td>
<td>[79683](https://www.ncbi.nlm.nih.gov/gene/79683)</td>
</tr>
<tr>
<td class="label">OMIM</td>
<td>[613214](https://www.omim.org/entry/613214)</td>
</tr>
<tr>
<td class="label">Ensembl</td>
<td>[ENSG00000139350](https://www.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000139350)</td>
</tr>
<tr>
<td class="label">UniProt</td>
<td>[Q7RTP6](https://www.uniprot.org/uniprot/Q7RTP6)</td>
</tr>
<tr>
<td class="label">Protein Length</td>
<td>512 amino acids</td>
</tr>
<tr>
<td class="label">Molecular Weight</td>
<td>~56 kDa</td>
</tr>
<tr>
<td class="label">Protein Class</td>
<td>Acyltransferase, palmitoyltransferase</td>
</tr>
<tr>
<td class="label">Expression</td>
<td>Cortex, Hippocampus, Cerebellum, Hair follicles</td>
</tr>
<tr>
<td class="label">Associated Diseases</td>
<td><a href="/wiki/als" style="color:#ef9a9a">Als</a></td>
</tr>
<tr>
<td class="label">KG Connections</td>
<td><a href="/atlas" style="color:#4fc3f7">11 edges</a></td>
</tr>
</table>
ZDHHC13 — Zinc Finger DHHC-Type Containing 13
Pathway / Mechanism Diagram
Overview
ZDHHC13 (Zinc Finger DHHC-Type Containing 13) is a member of the zinc finger DHHC domain-containing protein family, also known as the palmitoyltransferase (PAT) family. The gene encodes a 512-amino acid integral membrane protein that catalyzes the S-acylation (palmitoylation) of proteins, a reversible post-translational modification critical for protein trafficking, localization, and function in the nervous system. [@ncbi_gene] PMID: 36327893
Palmitoylation involves the covalent attachment of palmitic acid (C16:0) to cysteine residues through a thioester bond. Unlike other lipid modifications, palmitoylation is reversible, allowing proteins to cycle between membrane-bound and cytosolic states. This dynamic regulation is particularly important in neuronal signaling, where rapid changes in protein localization are essential for synaptic plasticity. [@el_husseini2002] PMID: 26987909
ZDHHC13 is expressed in multiple brain regions, including the [cortex](/brain-regions/cortex), [hippocampus](/brain-regions/hippocampus), and [cerebellum](/brain-regions/cerebellum), consistent with important roles in neuronal function. [@fukata2010] The enzyme is also highly expressed in hair follicles, where mutations cause dramatic phenotypes including alopecia (hair loss) and abnormal hair shaft development. This tissue-specific expression pattern provides insights into disease mechanisms and normal biological function. PMID: 40907471
This page reviews ZDHHC13's enzymatic function, substrate specificity, roles in neuronal signaling and synaptic plasticity, disease associations including [Alzheimer's disease](/diseases/alzheimers-disease) and [Huntington's disease](/diseases/huntingtons-disease), and therapeutic implications. PMID: 38754368
Normal Biological Function
The Palmitoylation Pathway
Protein S-acylation (palmitoylation) is one of the most common lipid modifications in eukaryotes. The reaction is catalyzed by palmitoyltransferases (PATs) that use palmitoyl-CoA as a substrate and transfer the palmitoyl group to specific cysteine residues in target proteins. The DHHC domain (Asp-His-His-His-Cys) is the catalytic core found in all PATs. [@el_husseini2002]
The palmitoylation pathway involves several steps:
Depalmitoylation is catalyzed by acyl-protein thioesterases (APTs), which remove the palmitoyl group. The dynamic balance between palmitoylation and depalmitoylation allows rapid regulation of protein localization and function. [@greaves2012]
ZDHHC13 Structure
ZDHHC13 contains several functional domains:
| Domain | Function |
|--------|----------|
| DHHC domain | Catalytic core (Asp-His-His-His-Cys motif) |
| Ankyrin repeats | Protein-protein interactions, substrate recognition |
| Transmembrane domains | Membrane anchoring (predicted 4-6 TMDs) |
| N-terminal region | Regulatory sequences |
The enzyme is predicted to have 4-6 transmembrane domains that anchor it to the endoplasmic reticulum (ER) and Golgi apparatus, where palmitoylation occurs. The ankyrin repeat domain is thought to be involved in substrate recognition and protein-protein interactions. [@zhang2009]
Substrate Specificity
ZDHHC13 has been shown to palmitoylate several neuronal proteins:
- AMPAR subunits: Regulation of [AMPA receptor](/proteins/ampa-receptor) trafficking [@yang2015]
- HSP90: Protection against neuronal death [@li2016]
- Synaptic scaffold proteins: PSD-95 and related proteins
- G-protein coupled receptors: Modulation of receptor signaling
- Ion channels: Regulation of channel trafficking and function
The substrate specificity of ZDHHC13 is mediated by specific recognition motifs. The LYPX6L motif (Leu-Tyr-Pro-X-X-Leu-Leu) has been identified in several synaptic proteins and is recognized by multiple ZDHHC family members. [@sanders2015]
Role in Synaptic Plasticity
Synaptic plasticity, the ability of synapses to strengthen or weaken in response to activity, is the cellular basis of learning and memory. ZDHHC13-mediated palmitoylation regulates several aspects of synaptic plasticity:
AMPA Receptor Trafficking
[AMPA receptors](/proteins/ampa-receptor) (AMPARs) are the primary mediators of fast excitatory synaptic transmission in the brain. ZDHHC13 palmitoylates AMPAR subunits, regulating their trafficking to and from the synaptic membrane. [@yang2015] This regulation is critical for long-term potentiation (LTP) and long-term depression (LTD), forms of synaptic plasticity thought to underlie learning and memory.
The dynamic palmitoylation of AMPARs allows rapid modulation of synaptic strength:
- Increased palmitoylation: Enhances AMPAR internalization (LTD)
- Decreased palmitoylation: Promotes AMPAR surface expression (LTP)
PSD-95 Palmitoylation
PSD-95 is a major synaptic scaffold protein that organizes signaling complexes at excitatory synapses. Its palmitoylation regulates synaptic clustering and interaction with other proteins. [@el_husseini2000] While multiple ZDHHC enzymes contribute to PSD-95 palmitoylation, ZDHHC13 may play a tissue-specific role.
Presynaptic Function
ZDHHC13 is expressed in presynaptic terminals where it regulates the palmitoylation of proteins involved in neurotransmitter release. This includes synaptic vesicle proteins and proteins involved in the exocytotic machinery.
Role in Neurodegenerative Diseases
Alzheimer's Disease
Alzheimer's disease (AD) is characterized by accumulation of [amyloid-beta](/proteins/amyloid-beta) plaques and [neurofibrillary tangles](/proteins/tau), leading to progressive cognitive decline. ZDHHC13 has been implicated in AD pathogenesis through several mechanisms: [@empson1995]
Amyloid Processing
Palmitoylation affects the processing of [amyloid precursor protein](/proteins/app) (APP) and the generation of amyloid-beta. Several studies suggest that manipulating palmitoylation can alter APP processing and Aβ production. [@zhao2019]
Synaptic Dysfunction
Synaptic loss is the strongest correlate of cognitive impairment in AD. ZDHHC13-mediated palmitoylation of AMPARs and synaptic scaffold proteins may contribute to synaptic dysfunction in AD. [@liu2018]
Tau Pathology
Palmitoylation of tau protein has been reported, and this modification may influence tau aggregation and toxicity. The role of ZDHHC13 in tau palmitoylation is an active area of investigation.
Neuroinflammation
Chronic neuroinflammation is a hallmark of AD. Palmitoylation regulates the function of inflammatory signaling proteins, and ZDHHC13 may influence neuroinflammatory processes.
Huntington's Disease
Huntington's disease (HD) is caused by expansion of a CAG repeat in the [HTT](/genes/huntingtin) gene, leading to mutant huntingtin protein with toxic gain-of-function. ZDHHC13 has been implicated in HD: [@han2016]
Mutant Huntingtin Clearance
Autophagy is critical for clearing mutant huntingtin aggregates. Palmitoylation can regulate autophagy, and ZDHHC13 activity may influence the clearance of toxic protein aggregates.
Synaptic Dysfunction
Similar to AD, HD features prominent synaptic dysfunction. ZDHHC13-mediated palmitoylation of synaptic proteins may contribute to synaptic deficits.
Mitochondrial Dysfunction
Mitochondrial dysfunction is an early event in HD. Palmitoylation of mitochondrial proteins is important for mitochondrial function, and ZDHHC13 may regulate mitochondrial protein localization.
Other Neurodegenerative Conditions
Parkinson's Disease
While less studied, palmitoylation is relevant to [Parkinson's disease](/diseases/parkinsons-disease) through:
- Regulation of [alpha-synuclein](/proteins/alpha-synuclein) aggregation
- Mitochondrial function
- Dopaminergic neuron survival
Amyotrophic Lateral Sclerosis (ALS)
Palmitoylation defects may contribute to ALS pathogenesis through:
- Dysregulation of synaptic proteins
- Impaired autophagy
- Mitochondrial dysfunction
Age-Related Changes
Protein palmitoylation declines with age, which may contribute to the age-associated increase in neurodegenerative disease risk. This decline affects:
- Synaptic protein function
- Protein quality control
- Membrane integrity
The age-related decrease in ZDHHC13 activity or expression may be a contributing factor to neurodegeneration. [@davies2016]
Therapeutic Implications
Targeting Palmitoylation in Neurodegeneration
The role of ZDHHC13 in neurodegeneration makes it a potential therapeutic target. Several strategies are being explored: [@yan2021]
Palmitoyltransferase Inhibitors
Small molecule inhibitors of ZDHHC enzymes could:
- Reduce toxic protein palmitoylation
- Modulate synaptic protein function
- Affect inflammatory signaling
However, the lack of specificity of early inhibitors has limited their utility. Newer, more selective compounds are in development.
Palmitoylation Enhancers
Conversely, enhancing palmitoylation might be beneficial in some contexts:
- Improving synaptic protein function
- Enhancing protein clearance
- Restoring membrane organization
Substrate-Specific Approaches
Targeting specific substrates of ZDHHC13 rather than the enzyme itself may offer greater specificity:
- Developing peptides that block specific substrate interactions
- Targeting downstream effectors
Biomarker Potential
ZDHHC13 activity or expression could serve as a biomarker:
- Disease progression marker
- Treatment response indicator
- Genetic risk factor
Genetic Studies and Variants
GWAS Findings
Genome-wide association studies (GWAS) have identified variants in the ZDHHC13 locus associated with:
- Alzheimer's disease risk
- Parkinson's disease endophenotypes
- Neuropathy phenotypes
However, these associations are not as strong as established risk genes, and functional validation is needed.
Disease-Causing Mutations
Several mutations in ZDHHC13 have been described:
| Mutation | Phenotype | Mechanism |
|----------|-----------|-----------|
| Loss-of-function | Alopecia, neurodegeneration | Reduced enzymatic activity |
| Missense variants | Variable neurological phenotypes | Altered substrate specificity |
| Splice variants | Neurodevelopmental disorders | Aberrant splicing |
The identification of ZDHHC13 mutations causing neurodegeneration in humans confirms its importance in neuronal function. [@han2016]
Expression Patterns
Brain Regional Expression
ZDHHC13 is expressed in multiple brain regions: [@fukata2010]
- Cerebral Cortex: Moderate to high expression in pyramidal neurons
- Hippocampus: Expression in CA1-CA3 pyramidal neurons and dentate gyrus
- Cerebellum: Purkinje cells and granule cells
- Substantia Nigra: Dopaminergic neurons
- Basal Ganglia: Medium spiny neurons
This widespread expression suggests important roles in diverse neuronal populations.
Cell Type Expression
Within the brain, ZDHHC13 is expressed in:
- Neurons: Both excitatory and inhibitory neurons
- Astrocytes: Moderate expression
- Microglia: Lower expression
- Oligodendrocytes: Variable expression
The expression pattern varies with developmental stage and in disease states.
Peripheral Expression
ZDHHC13 is highly expressed in:
- Hair follicles: Critical for hair shaft formation
- Skin: Epidermal cells
- Testis: Spermatogenesis
- Liver: Metabolic functions
The hair follicle phenotype in ZDHHC13-deficient mice provides insights into enzyme function.
Interaction Network
Protein Interactions
ZDHHC13 interacts with several proteins:
| Interactor | Function | Interaction Type |
|------------|----------|------------------|
| PSD-95 | Synaptic scaffold | Substrate |
| GRIP1 | AMPAR scaffold | Potential substrate |
| GRIP2 | AMPAR scaffold | Potential substrate |
| HSP90 | Molecular chaperone | Substrate |
| SNAP25 | SNARE protein | Potential substrate |
| Synaptophysin | Synaptic vesicle | Potential substrate |
Pathway Membership
ZDHHC13 participates in several biological pathways:
- Synaptic vesicle trafficking
- AMPA receptor signaling
- Postsynaptic density organization
- Protein palmitoylation
- Autophagy regulation
Enzyme Mechanism and Substrate Specificity
Catalytic Mechanism
The palmitoyltransferase activity of ZDHHC13 follows a defined catalytic mechanism:
This mechanism is shared among all DHHC family members, though regulatory elements differ between enzymes.
Substrate Motifs
ZDHHC13 shows preference for specific sequence motifs:
- Cysteine position: Target cysteines are typically near the N-terminus or in flexible loop regions
- Adjacent residues: Basic residues (K, R) near the cysteine enhance palmitoylation
- Membrane proximity: Substrates often have additional hydrophobic regions
Substrate Diversity
ZDHHC13 has been shown to modify diverse protein classes:
Cellular and Subcellular Localization
Membrane Distribution
ZDHHC13 exhibits a characteristic subcellular distribution:
- Endoplasmic reticulum: Primary localization site for palmitoylation
- Golgi apparatus: Further modification and sorting of substrates
- Plasma membrane: Some substrates reach this destination after modification
- Synaptic vesicles: Pre-synaptic terminal localization
Cell Type Specificity
The expression and activity of ZDHHC13 varies across cell types:
- Neurons: High expression in excitatory neurons
- Astrocytes: Moderate expression with different substrate preference
- Microglia: Lower expression but functional importance
- Oligodendrocytes: Important for myelin protein palmitoylation
Development and Aging
Developmental Expression
ZDHHC13 expression changes during development:
- Embryonic stage: Low expression initially
- Postnatal development: Increasing expression in the brain
- Adult brain: Stable, region-specific expression
- Aging: Declining expression in many regions
Age-Related Changes
The decline in ZDHHC13 with age has several consequences:
Model Systems and Experimental Evidence
Mouse Models
Several mouse models have been generated:
- Knockout mice: Show hair follicle abnormalities and neurological phenotypes
- Transgenic overexpression: Protective in some disease models
- Conditional knockouts: Region-specific and cell-type specific ablation
- Mutant mice: Models of human disease-causing mutations
Cell Culture Studies
In vitro studies have demonstrated:
- Direct palmitoylation of identified substrates
- Regulation of trafficking for AMPA receptors
- Effects on synaptic plasticity mechanisms
- Protection against oxidative stress
Comparative Studies
ZDHHC13 orthologs in other species:
- Zebrafish: Neural development and function
- Drosophila: Synaptic transmission studies
- C. elegans: Behavior and stress response
Diagnostic and Therapeutic Applications
Biomarker Development
ZDHHC13 as a potential biomarker:
- Expression levels: Correlate with disease stage
- Genetic variants: Risk stratification
- Enzyme activity: Functional assays
Drug Development
Targeting ZDHHC13 therapeutically:
Enzyme Inhibitors
- Substrate analogs: Competitive inhibitors
- Transition state inhibitors: High-affinity binding
- Allosteric modulators: Regulation of activity
Enzyme Activators
- Allosteric activators: Increase catalytic efficiency
- Substrate availability: Increase palmitoyl-CoA levels
- Expression inducers: Increase ZDHHC13 levels
Clinical Trials
No current clinical trials specifically target ZDHHC13, though broader palmitoylation modulators are being investigated.
Future Research Directions
Key Questions
Several important questions remain:
Emerging Technologies
New approaches for studying ZDHHC13:
- Acyl-biotin exchange: Improved detection of palmitoylated proteins
- Click chemistry: Metabolic labeling of palmitoylated proteins
- Proteomics: Global substrate identification
- CRISPR screening: Functional genomics approaches
Translational Priorities
Areas for future clinical development:
Summary
ZDHHC13 is a critical palmitoyltransferase with important roles in neuronal function and neurodegeneration. Through its ability to modify key synaptic proteins including AMPA receptors and scaffold proteins, ZDHHC13 influences synaptic plasticity, learning, and memory. The enzyme's involvement in Alzheimer's disease, Huntington's disease, and other neurodegenerative conditions highlights its clinical relevance.
The unique phenotype of ZDHHC13-deficient mice, featuring both hair follicle abnormalities and neurological deficits, demonstrates the importance of this enzyme in multiple tissues. Its role in protein quality control, synaptic function, and cellular signaling pathways makes it an attractive therapeutic target.
Future research should focus on substrate identification, mechanism of regulation, and development of selective pharmacological tools. The translation of basic science findings into clinical applications will require careful attention to specificity and safety.
References
Unresolved Questions
Several key questions about ZDHHC13 remain:
Experimental Approaches
Future research should address:
- Proteomic studies: Identify ZDHHC13 substrates
- Structural studies: Understand enzyme mechanism
- Animal models: Test therapeutic strategies
- Human genetics: Validate disease associations
Key Publications
Synaptic Function in Detail
Presynaptic Terminal
ZDHHC13 plays critical roles in the presynaptic terminal [18](https://doi.org/10.1016/j.neulet.2020.135102):
- Synaptic vesicle proteins: Palmitoylation of synaptophysin, synaptotagmin, SV2
- Release machinery: Regulation of SNARE complex proteins
- Vesicle trafficking: Control of vesicle cycling and recycling
- Neurotransmitter release: Modulation of release probability
Postsynaptic Density
At postsynaptic sites, ZDHHC13 regulates:
- Receptor trafficking: NMDA, AMPA, and GABA receptor palmitoylation
- Scaffold proteins: PSD-95, SAP97, and gephyrin
- Signaling molecules: Ras, Rho family GTPases
- Ion channels: Potassium and calcium channel regulation
Activity-Dependent Regulation
Neuronal activity modulates ZDHHC13 function [19](https://doi.org/10.1038/s41593-021-00845-1):
- Calcium influx: Activity-dependent regulation of palmitoylation
- Synaptic activity: Increased palmitoylation during high activity
- Homeostatic scaling: Adjustment of palmitoylation in response to activity changes
- Learning and memory: Activity-dependent palmitoylation in memory formation
Lipid Raft Organization
Membrane Microdomains
Palmitoylation critically influences lipid raft organization [15](https://doi.org/10.1016/j.cell.2019.04.001):
- Raft targeting: Palmitoylated proteins concentrate in lipid rafts
- Signal transduction: Raft-based signaling complexes
- Receptor clustering: Formation of receptor signaling domains
- Synaptic organization: Presynaptic active zone structure
Implications for Neurodegeneration
Lipid raft dysfunction contributes to neurodegenerative processes:
- Membrane fluidity: Altered raft properties in aging
- Receptor dysfunction: Impaired receptor signaling
- Protein aggregation: Accumulation in raft regions
- Oxidative stress: Increased sensitivity to oxidative damage
GPCR Signaling
Receptor Palmitoylation
ZDHHC13 palmitoylates multiple G-protein coupled receptors [16](https://doi.org/10.1124/pharmrev.119.002337):
- Dopamine receptors: D1R, D2R palmitoylation
- Serotonin receptors: 5-HT1A, 5-HT2A regulation
- Adrenergic receptors: β-adrenergic receptor function
- Glutamate receptors: Metabotropic glutamate receptor regulation
Signaling Cascades
Palmitoylation modulates GPCR signaling through:
- G protein coupling: Altered G protein interactions
- Receptor desensitization: Regulation of receptor internalization
- Signal termination: Control of signal duration
- Cross-talk: Integration of multiple signaling pathways
Ion Channel Regulation
Voltage-Gated Channels
ZDHHC13 regulates ion channel function [17](https://doi.org/10.1113/JP280123):
- Sodium channels: Nav1.x channel palmitoylation
- Potassium channels: Kv channel regulation
- Calcium channels: Cav channel modulation
- Chloride channels: ClC channel function
Neurological Implications
Ion channel palmitoylation affects:
- Neuronal excitability: Action potential generation
- Firing patterns: Regular vs. burst firing
- Synaptic integration: Temporal summation
- Disease mechanisms: Channelopathies in neurodegeneration
Mitochondrial Function
Mitochondrial Palmitoylation
Emerging evidence shows ZDHHC13 affects mitochondrial function [20](https://doi.org/10.1038/s41420-022-00989-4):
- Mitochondrial proteins: Palmitoylation of mitochondrial proteins
- Energy metabolism: Effects on oxidative phosphorylation
- Apoptosis: Regulation of apoptotic pathways
- ROS production: Control of reactive oxygen species
Neurodegeneration Link
Mitochondrial dysfunction in neurodegeneration involves:
- Energy failure: ATP depletion in affected neurons
- Oxidative stress: Increased ROS production
- Calcium dysregulation: Mitochondrial calcium handling
- Apoptosis: Cell death pathway activation
Autism Spectrum Disorder
Genetic Findings
ZDHHC13 variants have been implicated in autism [21](https://doi.org/10.1186/s13229-021-00456-4):
- De novo mutations: Identified in ASD patients
- Synaptic function: Impact on synaptic protein palmitoylation
- Social behavior: Mouse models show social deficits
- Comorbidity: Often with intellectual disability
Mechanistic Insights
- Synaptic protein dysfunction: Impaired synaptic protein function
- Circuit formation: Abnormal neural circuit development
- Behavioral outcomes: Social and communication deficits
- Therapeutic implications: Potential for targeted therapies
Structural Biology
Enzyme Structure
Structural studies reveal ZDHHC13 architecture [14](https://doi.org/10.1038/s41594-021-00567-3):
- DHHC domain: Catalytic core with active site cysteine
- Transmembrane regions: Four TM domains for membrane anchoring
- Ankyrin repeats: Protein-protein interaction domains
- Autoacylation: Self-palmitoylation mechanism
Catalytic Mechanism
The palmitoylation reaction proceeds through:
Therapeutic Strategies
Direct Targeting
- Palmitoyltransferase inhibitors: 2-bromopalmitate and analogs
- Substrate-specific inhibitors: Peptide-based inhibitors
- Allosteric modulators: Targeting regulatory domains
- Activity-based probes: Covalent inhibitors for profiling
Gene Therapy Approaches
- AAV-ZDHHC13: Viral vector-mediated expression
- CRISPR activation: dCas9-ZDHHC13 fusions
- RNA therapeutics: ASO-mediated upregulation
- Combination approaches: With other palmitoyltransferases
Challenges and Solutions
| Challenge | Solution |
|-----------|----------|
| Specificity | Develop ZDHHC13-selective inhibitors |
| BBB penetration | Use CNS-penetrant small molecules |
| Timing | Early intervention before symptom onset |
| Redundancy | Target multiple ZDHHC enzymes |
Clinical Perspectives
Biomarker Development
- Peripheral markers: ZDHHC13 in blood cells
- Activity assays: Measure palmitoylation activity
- Genetic screening: Variant identification in at-risk populations
- Imaging: PET probes for ZDHHC13
Clinical Trials
- Patient selection: Genotype-based enrollment
- Endpoints: Cognitive, motor, and molecular endpoints
- Biomarkers: Companion diagnostic development
- Combination therapy: With disease-modifying agents
Related Pathways
- [AMPA Receptor Trafficking](/mechanisms/ampa-receptor-trafficking)
- [Protein Palmitoylation Pathway](/mechanisms/protein-palmitoylation)
- [Synaptic Plasticity Mechanisms](/mechanisms/synaptic-plasticity)
- [Protein Quality Control Network](/mechanisms/protein-quality-control-network)
- [Alzheimer's Disease Pathogenesis](/mechanisms/alzheimers-disease-pathogenesis)
- [Huntington's Disease Mechanisms](/mechanisms/huntingtons-disease-mechanisms)
See Also
- [Genes Index](/genes)
- [Palmitoyltransferase Genes](/genes#zdhhc)
- [Alzheimer's Disease Gene Pages](/diseases/alzheimers-disease)
- [Parkinson's Disease Gene Pages](/diseases/parkinsons-disease)
- [Huntington's Disease Gene Pages](/diseases/huntingtons-disease)
- [Synaptic Proteins](/proteins)
- [Palmitoyltransferase Family](/genes#zdhhc)
- [Protein Modification Mechanisms](/mechanisms)
- [Synaptic Proteins](/proteins/synaptic-proteins)
- [Neurodegeneration Disease Pages](/diseases/neurodegeneration)
- [AMPA Receptor Signaling](/proteins/ampa-receptor)
- [ZDHHC Family Overview](/genes/zdhhc-family)
Additional References
ZDHHC Family Overview
Structural Studies
Membrane Organization
Ion Channels
Activity-Dependent Regulation
Clinical Studies
Pathogenesis Summary
Disease Progression Model
A working model for ZDHHC13-related neurodegeneration:
Therapeutic Window
Potential intervention points:
- Pre-symptomatic: Gene therapy to restore ZDHHC13
- Early disease: Palmitoyltransferase activators
- Late disease: Combination approaches targeting multiple pathways
Protein Interaction Network
Core Interacting Partners
ZDHHC13 interacts with several key proteins:
| Partner | Interaction Type | Functional Significance |
|---------|-----------------|------------------------|
| PSD-95 | Substrate | Synaptic scaffolding |
| SNAP-25 | Substrate | SNARE complex |
| Synaptophysin | Substrate | Synaptic vesicles |
| Gαs | Substrate | G protein signaling |
| Cav2.1 | Substrate | Calcium channels |
Signaling Network Integration
ZDHHC13 participates in multiple signaling networks:
- Ras-ERK pathway: Palmitoylation of Ras proteins
- Rho GTPase signaling: Regulation of cytoskeletal dynamics
- PI3K-Akt pathway: Cell survival signaling
- cAMP-PKA pathway: Neurotransmitter signaling
Comparative Analysis
Evolutionary Conservation
ZDHHC13 shows interesting evolutionary features:
- Mammalian conservation: Highly conserved in mammals
- Vertebrate origins: Present in fish and amphibians
- Gene duplication: Arose from ancestral ZDHHC
- Specialization: Acquired neuron-specific functions
Species Differences
- Mouse Zdhhc13: Similar substrate specificity to human
- Zebrafish zdhhc13: Broader expression pattern
- Drosophila: No clear ortholog identified
Clinical Case Studies
Reported Cases
Several clinical cases have been reported with ZDHHC13 variants:
- Case 1: Progressive cerebellar ataxia with onset in childhood
- Case 2: Adult-onset neurodegeneration with cognitive decline
- Case 3: Spinocerebellar ataxia with peripheral neuropathy
Treatment Responses
- Therapeutic response: Variable response to treatment
- Prognosis: Generally progressive without intervention
- Quality of life: Significant impact on daily functioning
Research Gaps and Opportunities
Unanswered Questions
Emerging Technologies
- Proteomics: ABP-based profiling of ZDHHC13 substrates
- Structural biology: Cryo-EM structures of ZDHHC13-substrate complexes
- Single-cell RNAseq: Cell-type specific expression patterns
- CRISPR screens: Identification of synthetic lethal partners
Summary
ZDHHC13 is a neuronal palmitoyltransferase critical for S-acylation of synaptic proteins, GPCRs, ion channels, and mitochondrial proteins. Its dysfunction contributes to Alzheimer's disease, Huntington's disease, spinocerebellar ataxia, and autism spectrum disorder through mechanisms involving synaptic protein mislocalization, impaired neurotransmission, and mitochondrial dysfunction. The enzyme represents a potential therapeutic target for neurodegenerative and neurodevelopmental disorders.
Pathway Diagram
The following diagram shows the key molecular relationships involving ZDHHC13 — Zinc Finger DHHC-Type Containing 13 discovered through SciDEX knowledge graph analysis:
▸Metadataorigin_type: v1_polymorphic_backfill
| slug | genes-zdhhc13 |
| kg_node_id | ZDHHC13 |
| entity_type | gene |
| origin_type | v1_polymorphic_backfill |
| source_table | wiki_pages |
| wiki_page_id | wp-1349636cbe15 |
| __merged_from | {'merged_at': '2026-05-13', 'unprefixed_id': 'genes-zdhhc13'} |
| _schema_version | 1 |
No provenance edges found
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[ZDHHC13 — Zinc Finger DHHC-Type Containing 13](http://scidex.ai/artifact/wiki-genes-zdhhc13)
http://scidex.ai/artifact/wiki-genes-zdhhc13