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Interneurons — Cell Type Hierarchy
Interneurons — Cell Type Hierarchy
<table class="infobox infobox-cell">
<tr>
<th class="infobox-header" colspan="2">Interneurons — Cell Type Hierarchy</th>
</tr>
<tr>
<td class="label">Cell Ontology ID</td>
<td>Cell Type</td>
</tr>
<tr>
<td class="label">[CL:0000099](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0000099)</td>
<td>interneuron</td>
</tr>
<tr>
<td class="label">[CL:0000410](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0000410)</td>
<td> CNS long range interneuron</td>
</tr>
<tr>
<td class="label">[CL:0000406](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0000406)</td>
<td> CNS short range interneuron</td>
</tr>
<tr>
<td class="label">[CL:0000246](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0000246)</td>
<td> Mauthner neuron</td>
</tr>
<tr>
<td class="label">[CL:0000561](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0000561)</td>
<td> amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:4030027](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4030027)</td>
<td> GABAergic amacrine cell</td>
</tr>
Interneurons — Cell Type Hierarchy
<table class="infobox infobox-cell">
<tr>
<th class="infobox-header" colspan="2">Interneurons — Cell Type Hierarchy</th>
</tr>
<tr>
<td class="label">Cell Ontology ID</td>
<td>Cell Type</td>
</tr>
<tr>
<td class="label">[CL:0000099](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0000099)</td>
<td>interneuron</td>
</tr>
<tr>
<td class="label">[CL:0000410](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0000410)</td>
<td> CNS long range interneuron</td>
</tr>
<tr>
<td class="label">[CL:0000406](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0000406)</td>
<td> CNS short range interneuron</td>
</tr>
<tr>
<td class="label">[CL:0000246](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0000246)</td>
<td> Mauthner neuron</td>
</tr>
<tr>
<td class="label">[CL:0000561](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0000561)</td>
<td> amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:4030027](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4030027)</td>
<td> GABAergic amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004235](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004235)</td>
<td> AB broad diffuse-1 amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004236](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004236)</td>
<td> AB broad diffuse-2 amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004237](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004237)</td>
<td> fountain amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:4033091](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4033091)</td>
<td> glycinergic-GABAergic amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004245](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004245)</td>
<td> indoleamine-accumulating amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004232](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004232)</td>
<td> starburst amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004250](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004250)</td>
<td> bistratified retinal amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004219](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004219)</td>
<td> A2 amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004229](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004229)</td>
<td> A2-like amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004233](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004233)</td>
<td> DAPI-3 amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004238](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004238)</td>
<td> asymmetric bistratified amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004230](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004230)</td>
<td> diffuse bistratified amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004227](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004227)</td>
<td> flat bistratified amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004239](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004239)</td>
<td> wavy bistratified amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:4023119](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4023119)</td>
<td> displaced amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:4030028](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4030028)</td>
<td> glycinergic amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004224](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004224)</td>
<td> AB diffuse-2 amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004221](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004221)</td>
<td> flag A amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004222](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004222)</td>
<td> flag B amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004252](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004252)</td>
<td> medium field retinal amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004234](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004234)</td>
<td> diffuse multistratified amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004251](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004251)</td>
<td> narrow field retinal amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004223](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004223)</td>
<td> AB diffuse-1 amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004228](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004228)</td>
<td> broad diffuse amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004220](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004220)</td>
<td> flag amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004226](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004226)</td>
<td> monostratified amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004231](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004231)</td>
<td> recurving diffuse amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004225](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004225)</td>
<td> spider amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004253](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004253)</td>
<td> wide field retinal amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004240](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004240)</td>
<td> WF1 amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004241](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004241)</td>
<td> WF2 amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004242](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004242)</td>
<td> WF3-1 amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004243](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004243)</td>
<td> WF3-2 amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:0004244](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004244)</td>
<td> WF4 amacrine cell</td>
</tr>
<tr>
<td class="label">[CL:4070016](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4070016)</td>
<td> anterior burster neuron</td>
</tr>
<tr>
<td class="label">[CL:0000103](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0000103)</td>
<td> bipolar neuron</td>
</tr>
<tr>
<td class="label">[CL:4023007](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4023007)</td>
<td> L2/3 bipolar VIP GABAergic interneuron (Mmus)</td>
</tr>
<tr>
<td class="label">[CL:4023077](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4023077)</td>
<td> bitufted neuron</td>
</tr>
<tr>
<td class="label">[CL:0008031](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0008031)</td>
<td> cortical interneuron</td>
</tr>
<tr>
<td class="label">[CL:0010011](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0010011)</td>
<td> cerebral cortex GABAergic interneuron</td>
</tr>
<tr>
<td class="label">[CL:2000088](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_2000088)</td>
<td> Ammon's horn basket cell</td>
</tr>
<tr>
<td class="label">[CL:4023030](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4023030)</td>
<td> L2/3/5 fan Martinotti sst GABAergic interneuron (Mmus)</td>
</tr>
<tr>
<td class="label">[CL:4023031](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4023031)</td>
<td> L4 sst Martinotti interneuron (Mmus)</td>
</tr>
<tr>
<td class="label">[CL:4023028](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4023028)</td>
<td> L5 non-Martinotti sst GABAergic interneuron (Mmus)</td>
</tr>
<tr>
<td class="label">[CL:4023027](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4023027)</td>
<td> L5 sst T-Martinotti interneuron (Mmus)</td>
</tr>
<tr>
<td class="label">[CL:4023071](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4023071)</td>
<td> L5/6 cck GABAergic interneuron (Mmus)</td>
</tr>
<tr>
<td class="label">[CL:4023118](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4023118)</td>
<td> L5/6 non-Martinotti sst GABAergic interneuron (Mmus)</td>
</tr>
<tr>
<td class="label">[CL:4023075](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4023075)</td>
<td> L6 th sst GABAergic interneuron (Mmus)</td>
</tr>
<tr>
<td class="label">[CL:4023010](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4023010)</td>
<td> alpha7 GABAergic cortical interneuron (Mmus)</td>
</tr>
<tr>
<td class="label">[CL:4023064](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4023064)</td>
<td> caudal ganglionic eminence derived interneuron</td>
</tr>
<tr>
<td class="label">[CL:2000087](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_2000087)</td>
<td> dentate gyrus of hippocampal formation basket cell</td>
</tr>
<tr>
<td class="label">[CL:4023069](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4023069)</td>
<td> medial ganglionic eminence derived GABAergic interneuron</td>
</tr>
<tr>
<td class="label">[CL:2000086](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_2000086)</td>
<td> neocortex basket cell</td>
</tr>
<tr>
<td class="label">[CL:4023122](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4023122)</td>
<td> oxytocin receptor sst GABAergic cortical interneuron</td>
</tr>
<tr>
<td class="label">[CL:4032001](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4032001)</td>
<td> reelin GABAergic cortical interneuron</td>
</tr>
<tr>
<td class="label">[CL:0008032](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0008032)</td>
<td> rosehip neuron</td>
</tr>
<tr>
<td class="label">[CL:1001569](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_1001569)</td>
<td> hippocampal interneuron</td>
</tr>
<tr>
<td class="label">[CL:4072021](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4072021)</td>
<td> corticotropin-releasing neuron</td>
</tr>
<tr>
<td class="label">[CL:4023159](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4023159)</td>
<td> double bouquet cell</td>
</tr>
<tr>
<td class="label">[CL:0000498](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0000498)</td>
<td> inhibitory interneuron</td>
</tr>
<tr>
<td class="label">[CL:0011005](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0011005)</td>
<td> GABAergic interneuron</td>
</tr>
<tr>
<td class="label">[CL:4072013](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4072013)</td>
<td> A16 dopaminergic neuron</td>
</tr>
<tr>
<td class="label">[CL:4310145](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4310145)</td>
<td> AMY-SLEA-BNST D1 GABA GABAergic interneuron (Primate)</td>
</tr>
<tr>
<td class="label">[CL:4310146](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4310146)</td>
<td> AMY-SLEA-BNST GABA GABAergic interneuron (Primate)</td>
</tr>
<tr>
<td class="label">[CL:0011106](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0011106)</td>
<td> GABAnergic interplexiform cell</td>
</tr>
<tr>
<td class="label">[CL:4310100](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4310100)</td>
<td> GPe-NDB-SI LHX6-LHX8-GBX1 GABA GABAergic interneuron (Primate)</td>
</tr>
<tr>
<td class="label">[CL:0005007](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0005007)</td>
<td> Kolmer-Agduhr neuron</td>
</tr>
<tr>
<td class="label">[CL:4023076](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4023076)</td>
<td> Martinotti neuron</td>
</tr>
<tr>
<td class="label">[CL:4072016](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4072016)</td>
<td> NPY interneuron</td>
</tr>
<tr>
<td class="label">[CL:4310110](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4310110)</td>
<td> SN EBF2 GABA GABAergic interneuron (Primate)</td>
</tr>
<tr>
<td class="label">[CL:4310112](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4310112)</td>
<td> SN GATA3-PAX8 GABA GABAergic interneuron (Primate)</td>
</tr>
<tr>
<td class="label">[CL:4310114](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4310114)</td>
<td> SN SEMA5A GABA GABAergic interneuron (Primate)</td>
</tr>
<tr>
<td class="label">[CL:4310117](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4310117)</td>
<td> SN-VTR-HTH GATA3-TCF7L2 GABA GABAergic interneuron (Primate)</td>
</tr>
<tr>
<td class="label">[CL:4042001](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4042001)</td>
<td> TAC3-positive striatal interneuron</td>
</tr>
<tr>
<td class="label">[CL:4310143](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4310143)</td>
<td> ZI-HTH GABA GABAergic interneuron (Primate)</td>
</tr>
<tr>
<td class="label">[CL:0000118](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0000118)</td>
<td> basket cell</td>
</tr>
<tr>
<td class="label">[CL:4023057](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4023057)</td>
<td> cerebellar inhibitory GABAergic interneuron</td>
</tr>
<tr>
<td class="label">[CL:0020007](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0020007)</td>
<td> dorso-striatal cholinergic-GABAergic neuron</td>
</tr>
<tr>
<td class="label">[CL:4023018](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4023018)</td>
<td> pvalb GABAergic interneuron</td>
</tr>
<tr>
<td class="label">[CL:4310121](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4310121)</td>
<td> striatal SST-LYPD6-RSPO2 GABAergic interneuron (Primate)</td>
</tr>
<tr>
<td class="label">[CL:0020008](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0020008)</td>
<td> striatal cholinergic-GABAergic neuron</td>
</tr>
<tr>
<td class="label">[CL:4042023](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4042023)</td>
<td> striatal pthlh-expressing interneuron</td>
</tr>
<tr>
<td class="label">[CL:0011104](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0011104)</td>
<td> interplexiform cell</td>
</tr>
<tr>
<td class="label">[CL:0011105](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0011105)</td>
<td> dopamanergic interplexiform cell</td>
</tr>
<tr>
<td class="label">[CL:0004001](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004001)</td>
<td> local interneuron</td>
</tr>
<tr>
<td class="label">[CL:4023063](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4023063)</td>
<td> medial ganglionic eminence derived interneuron</td>
</tr>
<tr>
<td class="label">[CL:0000693](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0000693)</td>
<td> neurogliaform cell</td>
</tr>
<tr>
<td class="label">[CL:4023023](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4023023)</td>
<td> L5,6 neurogliaform lamp5 GABAergic interneuron (Mmus)</td>
</tr>
<tr>
<td class="label">[CL:4023024](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4023024)</td>
<td> neurogliaform lamp5 GABAergic cortical interneuron (Mmus)</td>
</tr>
<tr>
<td class="label">[CL:1001434](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_1001434)</td>
<td> olfactory bulb interneuron</td>
</tr>
<tr>
<td class="label">[CL:1001502](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_1001502)</td>
<td> mitral cell</td>
</tr>
<tr>
<td class="label">[CL:0000626](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0000626)</td>
<td> olfactory granule cell</td>
</tr>
<tr>
<td class="label">[CL:1001435](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_1001435)</td>
<td> periglomerular cell</td>
</tr>
<tr>
<td class="label">[CL:0000745](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0000745)</td>
<td> retina horizontal cell</td>
</tr>
<tr>
<td class="label">[CL:0004217](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004217)</td>
<td> H1 horizontal cell</td>
</tr>
<tr>
<td class="label">[CL:0004218](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0004218)</td>
<td> H2 horizontal cell</td>
</tr>
<tr>
<td class="label">[CL:0000691](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0000691)</td>
<td> stellate interneuron</td>
</tr>
<tr>
<td class="label">[CL:0010010](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_0010010)</td>
<td> cerebellar stellate cell</td>
</tr>
<tr>
<td class="label">[CL:4023161](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4023161)</td>
<td> unipolar brush cell</td>
</tr>
<tr>
<td class="label">[CL:4301586](https://www.ebi.ac.uk/ols4/ontologies/cl/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FCL_4301586)</td>
<td> unipolar brush cell (Mmus)</td>
</tr>
</table>
> Cell Types] > Interneurons — Cell Type Hierarchy
Interneurons — Cell Type Hierarchy
Overview
Interneurons — Cell Type Hierarchy describes a neural cell population with specific vulnerability or functional significance in neurodegenerative disease. This page covers cell morphology, molecular markers, connectivity, and disease-specific pathological changes.
Interneuron subtypes including parvalbumin, somatostatin, VIP, and other inhibitory cell types.
This page provides a navigable hierarchy of interneuron (CL:0000099) from the [Cell Ontology](https://obofoundry.org/ontology/cl.html), cross-referenced with NeuroWiki cell type pages.
Coverage: 30/106 types have NeuroWiki pages (28%)
Hierarchy Diagram
> Green nodes link to existing NeuroWiki pages. Click a node to navigate to it.
Complete Type Listing
About This Hierarchy
This hierarchy is derived from the [Cell Ontology (CL)](https://obofoundry.org/ontology/cl.html), a structured ontology for cell types maintained by the OBO Foundry. Cell Ontology IDs (e.g., CL:0000099) provide a standardized vocabulary for describing cell types across species and experimental contexts.
Related Resources
- [Cell Ontology on OLS](https://www.ebi.ac.uk/ols4/ontologies/cl) — Browse the full ontology
- [BICAN Brain Cell Atlas](https://portal.brain-map.org/atlases-and-data/bkp/abc-atlas) — Allen Institute brain cell taxonomy
- [CellxGene Census](https://cellxgene.cziscience.com/) — CZI single-cell data portal
- [PanglaoDB](https://panglaodb.se/) — Cell type marker database
How Mappings Are Made
NeuroWiki cell type pages are mapped to Cell Ontology terms using a combination of:
Confidence levels: Exact (1.0), High (0.9+), Medium (0.7+), Low (0.5+), Tentative (<0.5)
See Also
Related Diseases
- [Alzheimer's Disease](/diseases/alzheimers-disease) — Interneuron loss in AD
- [Parkinson's Disease](/diseases/parkinsons-disease) — Striatal interneuron changes
- [Huntington's Disease](/diseases/huntingtons-disease) — Interneuron dysfunction
- [Epilepsy](/diseases/epilepsy) — Interneuron hyperexcitability
- [Frontotemporal Dementia](/diseases/frontotemporal-dementia) — Interneuron vulnerability
Related Cell Types
- [Cortical Interneurons](/cell-types/cortical-interneurons) — Cortical inhibitory neurons
- [Basket Cells](/cell-types/basket-cells) — PV+ perisomatic interneurons
- [Martinotti Cells](/cell-types/cortical-martinotti-cells) — SST+ dendrite-targeting
- [VIP Interneurons](/cell-types/vip-interneurons) — Disinhibitory interneurons
- [Striatal Interneurons](/cell-types/striatal-interneurons) — Basal ganglia interneurons
- [Parvalbumin Neurons](/cell-types/parvalbumin-neurons) — Fast-spiking interneurons
- [Somatostatin Neurons](/cell-types/somatostatin-neurons) — Dendrite-targeting interneurons
Related Mechanisms
- [Excitotoxicity Pathway](/mechanisms/excitotoxicity-pathway) — Interneuron vulnerability
- [GABAergic Dysfunction](/mechanisms/gabaergic-dysfunction) — Inhibitory dysfunction
- [Neuroinflammation](/mechanisms/neuroinflammation-overview) — Glial-interneuron interactions
- [Calcium Homeostasis](/mechanisms/calcium-homeostasis-neurodegeneration) — Interneuron calcium regulation
- [Synaptic Dysfunction](/mechanisms/synaptic-loss-neurodegeneration) — Synaptic alterations
Related Brain Regions
- [Cortex](/brain-regions/cortex) — Cortical interneuron circuits
- [Hippocampus](/brain-regions/hippocampus) — Hippocampal interneurons
- [Basal Ganglia](/brain-regions/basalganglia) — Striatal interneurons
- [Cerebellum](/brain-regions/cerebellum) — Cerebellar interneurons
Related Proteins & Genes
- [GABA Receptors](/proteins/gaba-receptors) — GABA-A and GABA-B
- [GAD1 Gene](/genes/gad1) — GABA synthesis
- [Parvalbumin Gene](/genes/pvalb) — PV interneuron marker
- [SST Gene](/genes/sst) — Somatostatin marker
Legacy Links (to be converted)
- [Cortical Interneuron Degeneration in Alzheimer's Disease
- Amacrine Cells (Retina)
- [Starburst Amacrine Cells](/cell-types/starburst-amacrine-cells)
- [Retinal Amacrine Cells](/cell-types/retinal-amacrine-cells)
- Narrow-Field Amacrine Cells
- Wide-Field Amacrine Cells
- [Cortical Bipolar Cells](/cell-types/cortical-bipolar-cells)
- [Cortical SST Detector Cells](/cell-types/cortical-sst-detector-cells)
](/cell-types/cortical-interneuron-degeneration-in-alzheimer's-disease
--amacrine-cells-(retina)
--starburst-amacrine-cells
--retinal-amacrine-cells
--narrow-field-amacrine-cells
--wide-field-amacrine-cells
--cortical-bipolar-cells
--cortical-sst-detector-cells)## External Links
- [PubMed](https://pubmed.ncbi.nlm.nih.gov/)
- [KEGG Pathways](https://www.genome.jp/kegg/pathway.html)
References
References pending.
Pathway Diagram
The following diagram shows the key molecular relationships involving Interneurons — Cell Type Hierarchy discovered through SciDEX knowledge graph analysis:
▸Metadataorigin_type: v1_polymorphic_backfill
| slug | cell-types-interneurons-hierarchy |
| kg_node_id | None |
| entity_type | cell |
| origin_type | v1_polymorphic_backfill |
| source_table | wiki_pages |
| wiki_page_id | wp-a185e77e7b11 |
| __merged_from | {'merged_at': '2026-05-13', 'unprefixed_id': 'cell-types-interneurons-hierarchy'} |
| _schema_version | 1 |
No provenance edges found
Use ?embed=1 to load the artifact without SciDEX chrome — suitable for iframing into wiki pages or external sites.
<iframe src="http://scidex.ai/artifact/wiki-cell-types-interneurons-hierarchy?embed=1" width="100%" height="600" style="border:0;border-radius:8px"></iframe>
[Interneurons — Cell Type Hierarchy](http://scidex.ai/artifact/wiki-cell-types-interneurons-hierarchy)
http://scidex.ai/artifact/wiki-cell-types-interneurons-hierarchy