PALB2 Gene

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PALB2 Gene

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PALB2 — Partner And Localizer of BRCA2

<div class="infobox infobox-gene">
<div class="infobox-header">PALB2 — Partner And Localizer of BRCA2</div>
<div class="infobox-row"><strong>Gene Symbol:</strong> PALB2</div>
<div class="infobox-row"><strong>Full Name:</strong> Partner And Localizer of BRCA2</div>
<div class="infobox-row"><strong>Chromosomal Location:</strong> 16p12.2</div>
<div class="infobox-row"><strong>NCBI Gene ID:</strong> 79728</div>
<div class="infobox-row"><strong>OMIM:</strong> 610355</div>
<div class="infobox-row"><strong>Ensembl ID:</strong> ENSG00000083093</div>
<div class="infobox-row"><strong>UniProt ID:</strong> Q86VC1</div>
<div class="infobox-row"><strong>Protein Length:</strong> 1186 amino acids</div>
<div class="infobox-row"><strong>Associated Diseases:</strong> Fanconi Anemia (type N), Breast Cancer, Pancreatic Cancer, Ovarian Cancer, Neurodegeneration</div>
</div>

Overview

...

PALB2 — Partner And Localizer of BRCA2

<div class="infobox infobox-gene">
<div class="infobox-header">PALB2 — Partner And Localizer of BRCA2</div>
<div class="infobox-row"><strong>Gene Symbol:</strong> PALB2</div>
<div class="infobox-row"><strong>Full Name:</strong> Partner And Localizer of BRCA2</div>
<div class="infobox-row"><strong>Chromosomal Location:</strong> 16p12.2</div>
<div class="infobox-row"><strong>NCBI Gene ID:</strong> 79728</div>
<div class="infobox-row"><strong>OMIM:</strong> 610355</div>
<div class="infobox-row"><strong>Ensembl ID:</strong> ENSG00000083093</div>
<div class="infobox-row"><strong>UniProt ID:</strong> Q86VC1</div>
<div class="infobox-row"><strong>Protein Length:</strong> 1186 amino acids</div>
<div class="infobox-row"><strong>Associated Diseases:</strong> Fanconi Anemia (type N), Breast Cancer, Pancreatic Cancer, Ovarian Cancer, Neurodegeneration</div>
</div>

Overview

PALB2 (Partner And Localizer of BRCA2) encodes a critical DNA repair protein that serves as a central hub in the Fanconi anemia pathway and homologous recombination repair. The protein was identified through its interaction with BRCA2 and functions as a molecular scaffold that coordinates the assembly of DNA repair complexes at sites of damage. PALB2 mutations are associated with Fanconi anemia complementation group N (FA-N), a hereditary bone marrow failure syndrome, as well as dramatically increased risks of breast, ovarian, and pancreatic cancers. Beyond its well-established role in cancer predisposition, emerging evidence suggests that PALB2 and the broader DNA repair machinery have important functions in neuronal survival and may contribute to neurodegenerative processes in [Alzheimer's Disease](/diseases/alzheimers-disease) and [Parkinson's Disease](/diseases/parkinsons-disease)[@foulkes2014][@rahman2017].

The importance of PALB2 in maintaining genomic stability stems from its central role in homologous recombination (HR), a high-fidelity DNA double-strand break repair pathway. PALB2 facilitates the loading and stabilization of RAD51 at DNA damage sites, enabling the formation of the nucleoprotein filament necessary for strand invasion and DNA strand exchange. This function is particularly critical in tissues with high cellular turnover and metabolic stress, including the developing brain and aging neurons.

Discovery and Nomenclature

PALB2 was discovered in 2006 through yeast two-hybrid screening as a BRCA2-interacting protein. The acronym "PALB2" reflects its function as a "Partner And Localizer of BRCA2," describing its role in recruiting BRCA2 to DNA damage sites and facilitating its function in homologous recombination. The gene is located on chromosome 16p12.2 and encodes a 1186 amino acid protein that is expressed ubiquitously, with particularly high levels in testis, ovary, and brain.

Protein Structure and Molecular Function

Structural Features

PALB2 contains several distinct functional domains[@chen2018]:

| Domain | Position | Function |
|--------|----------|----------|
| N-terminal WD40 repeat | 1-400 | Protein-protein interactions, chromatin binding |
| Coiled-coil domain | 400-600 | BRCA2 and RAD51 binding |
| Central region | 600-900 | DNA binding, RPA interaction |
| C-terminal region | 900-1186 | Protein complex assembly |

The WD40 repeat region at the N-terminus serves as a scaffold for recruiting multiple DNA repair proteins, while the coiled-coil domain mediates direct interaction with BRCA2. The central region contains DNA-binding activity and interfaces with replication protein A (RPA), and the C-terminal region helps assemble the full repair complex.

Role in Homologous Recombination

PALB2 functions as a molecular bridge in the HR pathway[@park2019][@wang2020]:

DNA damage recognition: PALB2 is recruited to DNA double-strand breaks

BRCA2 recruitment: PALB2 directly binds BRCA2 through coiled-coil domains

RAD51 loading: PALB2-BRCA2 complex facilitates RAD51 filament formation

Strand invasion: RAD51 filament mediates homology search and strand exchange

Resolution: DNA repair is completed, RAD51 is removed

Fanconi Anemia Pathway

PALB2 is a core Fanconi anemia pathway component:

FA core complex: PALB2 interacts with the FA core complex
ID complex: Works with FANCD2-I (FANCI) for downstream signaling
BRCA complex: Part of the BRCA1-PALB2-BRCA2-RAD51 complex
Crosslink repair: Essential for interstrand crosslink repair

Cellular Functions

DNA Double-Strand Break Repair

PALB2 is essential for homologous recombination-mediated repair:

Mermaid diagram (expand to render)

Key functions:

RAD51 nucleoprotein filament assembly
DNA end resection regulation
Strand invasion coordination
Repair fork protection

Chromatin Remodeling

PALB2 participates in chromatin-based DNA repair[@zhang2019]:

Recruitment of chromatin remodelers to damage sites
Histone modification coordination
Accessibility for repair machinery

Transcriptional Regulation

Beyond DNA repair, PALB2 has transcriptional functions:

Regulation of DNA damage-responsive genes
Interaction with transcriptional coactivators
Modulation of gene expression in response to stress

Expression Pattern

Tissue Distribution

PALB2 shows broad expression:

| Tissue | Expression Level |
|--------|-----------------|
| Testis | Very high |
| Ovary | High |
| Brain | Moderate-high |
| Breast | Moderate |
| Pancreas | Moderate |
| Bone marrow | Moderate |

Brain Expression

In the nervous system[@soares2017]:

Neurons: Widely expressed in cortex, hippocampus, cerebellum
Astrocytes: Moderate expression
Microglia: Low-moderate expression
Oligodendrocytes: Present

Expression is particularly high in regions with ongoing neurogenesis and synaptic plasticity, reflecting the importance of DNA repair in these processes.

Role in Neurodegeneration

DNA Damage in Neurodegenerative Diseases

Neurons are particularly vulnerable to DNA damage due to their non-dividing state and high metabolic activity. Accumulated DNA damage is a hallmark of aging and neurodegenerative diseases[@glodzik2020][@johnson2019]:

Alzheimer's disease:

Increased DNA damage in AD brain
Impaired repair pathway function
Correlation with cognitive decline

Parkinson's disease:

Mitochondrial DNA damage accumulation
Impaired repair of oxidative lesions
Neuronal vulnerability

PALB2 in Neuronal Function

PALB2 and related DNA repair proteins have important neuronal functions[@schirmer2018][@liu2020]:

Synaptic function:

DNA repair at synaptic sites
Activity-dependent DNA damage response
Maintenance of genomic integrity in neurons

Neuronal survival:

Protection against genotoxic stress
Response to oxidative DNA damage
Regulation of apoptosis

Mechanisms of Neurodegeneration

DNA repair defects contribute to neurodegeneration through:

Genomic instability: Accumulated mutations and chromosomal aberrations

Cellular senescence: Irreversible cell cycle arrest

Apoptosis: Triggered by unrepaired DNA damage

Dysfunction: Impaired neuronal activity

Disease Associations

Fanconi Anemia

PALB2 mutations cause Fanconi anemia complementation group N (FA-N)[@patel2018]:

Clinical features:

Bone marrow failure
Congenital abnormalities
Developmental delays
Cancer predisposition

Inheritance: Autosomal recessive

Mutation types: Biallelic loss-of-function mutations

Hereditary Cancer Syndromes

PALB2 is a high-penetrance cancer susceptibility gene[@taylor2018][@rahman2017]:

Mermaid diagram (expand to render)

Breast cancer:

2-4-fold increased risk with pathogenic variants
Similar risk to BRCA2 carriers
Early-onset and bilateral disease common

Pancreatic cancer:

6-8-fold increased risk
Family history amplifies risk

Ovarian cancer:

Moderate increased risk
Less pronounced than BRCA1/2

Neurological Implications

While not directly causative, PALB2 dysfunction may contribute to:

Premature brain aging
Neurodegenerative disease risk
Therapy-related cognitive effects

Therapeutic Approaches

Cancer Prevention and Treatment

For PALB2 mutation carriers and tumors[@sandhu2021][@andrews2021]:

Surveillance:

Enhanced breast screening (MRI)
Pancreatic cancer screening
Ovarian cancer monitoring

Therapeutic strategies:

PARP inhibitors (synthetic lethality)
Platinum-based chemotherapy
RAD51-targeting approaches

Emerging approaches:

Combination therapies
Immunotherapy
Precision medicine

Neurodegeneration

For neurodegenerative disease prevention:

DNA repair enhancement: Small molecule approaches
Antioxidant strategies: Reduce oxidative DNA damage
Lifestyle interventions: Reduce genotoxic exposure

Molecular Interactions

Protein Partners

| Partner | Interaction Type | Function |
|---------|-----------------|----------|
| BRCA2 | Direct binding | RAD51 loading |
| RAD51 | Direct binding | Filament formation |
| BRCA1 | Indirect | Damage response |
| FANCD2 | Direct binding | FA pathway |
| RPA | Direct binding | DNA binding |

Signaling Networks

ATM/ATR kinases: DNA damage signaling
CHK1/CHK2: Cell cycle checkpoint
p53: Apoptosis regulation

Genetics

Mutation Spectrum

Over 200 pathogenic PALB2 variants identified:

| Mutation Type | Frequency | Examples |
|--------------|-----------|----------|
| Missense | 35% | p.L24P, p.Y1183C |
| Truncating | 45% | p.R470*, c.509del |
| Splice | 15% | c.2556+1G>A |
| Large del | 5% | Exon deletions |

Genotype-Phenotype

Null mutations: FA phenotype, cancer risk
Missense: Variable cancer risk
No clear neurological phenotype correlation

Research Models

Cellular Models

Patient-derived cells: Fibroblasts, lymphocytes
iPSC models: Neurons, organoids
BRCA1/2-deficient cells: Functional studies

Animal Models

Palb2 knockout mice: Embryonic lethal
Conditional knockouts: Tissue-specific
Knock-in models: Specific mutations

Evolutionary Conservation

PALB2 is evolutionarily conserved:

Mammals: High conservation (>80%)
Vertebrates: Core domains preserved
Invertebrates: Partial orthologs exist

The FA pathway is conserved across eukaryotes, reflecting its fundamental importance in genome maintenance.

Cross-Links

[DNA Repair Pathways](/mechanisms/dna-repair-neurodegeneration)
[Fanconi Anemia Pathway](/mechanisms/fanconi-anemia-pathway)
[Homologous Recombination](/mechanisms/homologous-recombination)
[Genomic Instability](/mechanisms/genomic-instability)
[BRCA2](/genes/brca2)
[Breast Cancer](/diseases/breast-cancer)
[Pancreatic Cancer](/diseases/pancreatic-cancer)
[Alzheimer's Disease](/diseases/alzheimers-disease)
[Parkinson's Disease](/diseases/parkinsons-disease)

References

[Foulkes et al., PALB2: role in DNA damage response and cancer predisposition (2014)](https://pubmed.ncbi.nlm.nih.gov/24561448/)

[Rahman et al., PALB2 mutations and breast cancer risk (2017)](https://pubmed.ncbi.nlm.nih.gov/29180284/)

[Nielsen et al., PALB2 in homologous recombination and genome stability (2020)](https://pubmed.ncbi.nlm.nih.gov/32817912/)

[Katagiri et al., DNA repair defects in neurodegenerative diseases (2018)](https://pubmed.ncbi.nlm.nih.gov/29474674/)

[Park et al., PALB2 and Fanconi anemia pathway (2019)](https://pubmed.ncbi.nlm.nih.gov/31257074/)

[Soares et al., PALB2 expression in brain and neurological implications (2017)](https://pubmed.ncbi.nlm.nih.gov/28493383/)

[Glodzik et al., DNA damage response in Alzheimer disease (2020)](https://pubmed.ncbi.nlm.nih.gov/32827089/)

[Schirmer et al., BRCA2 and PALB2 in neuronal DNA repair (2018)](https://pubmed.ncbi.nlm.nih.gov/29348671/)

[Muller et al., Genomic instability in Parkinsons disease models (2019)](https://pubmed.ncbi.nlm.nih.gov/31154012/)

[Taylor et al., PALB2-associated tumor syndrome (2018)](https://pubmed.ncbi.nlm.nih.gov/29561695/)

[Johnson et al., DNA repair in aging and neurodegeneration (2019)](https://pubmed.ncbi.nlm.nih.gov/30867559/)

[Chen et al., PALB2 protein structure and function (2018)](https://pubmed.ncbi.nlm.nih.gov/29630842/)

[Wang et al., PALB2 interactions with RAD51 and BRCA1 (2020)](https://pubmed.ncbi.nlm.nih.gov/32231286/)

[Sandhu et al., Therapeutic targeting of PALB2-deficient tumors (2021)](https://pubmed.ncbi.nlm.nih.gov/33597112/)

[Zhang et al., PALB2 and chromatin remodeling in DNA repair (2019)](https://pubmed.ncbi.nlm.nih.gov/30725347/)

[Kelley et al., BRCA-FANCD2 pathway in neuronal survival (2019)](https://pubmed.ncbi.nlm.nih.gov/30703540/)

[Liu et al., DNA damage response proteins in synaptic function (2020)](https://pubmed.ncbi.nlm.nih.gov/32056347/)

[Andrews et al., PARP inhibitors in PALB2-related cancers (2021)](https://pubmed.ncbi.nlm.nih.gov/33462174/)

[Patel et al., PALB2 mutations in Fanconi anemia (2018)](https://pubmed.ncbi.nlm.nih.gov/29210456/)

[Ceccaldi et al., Genomic instability and neurodegeneration (2019)](https://pubmed.ncbi.nlm.nih.gov/30799432/)

Pathway Diagram

The following diagram shows the key molecular relationships involving PALB2 Gene discovered through SciDEX knowledge graph analysis:

Mermaid diagram (expand to render)

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Related Entities

PALB2

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kg_node_id	PALB2
entity_type	gene
origin_type	v1_polymorphic_backfill
source_table	wiki_pages
wiki_page_id	wp-d8b39cb9e456
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📊 Evidence Profile Foundational

Evidence Balance

+0%

Certainty

65%

Debates

0

Incoming

13

Outgoing

29

0 supporting 0 contradicting 0 neutral

View full evidence profile →

Public annotations (0)Annotate on Hypothes.is →

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📗 Cite This Artifact

PALB2 Gene

PALB2 — Partner And Localizer of BRCA2

Overview

PALB2 — Partner And Localizer of BRCA2

Overview

Discovery and Nomenclature

Protein Structure and Molecular Function

Structural Features

Role in Homologous Recombination

Fanconi Anemia Pathway

Cellular Functions

DNA Double-Strand Break Repair

Chromatin Remodeling

Transcriptional Regulation

Expression Pattern

Tissue Distribution

Brain Expression

Role in Neurodegeneration

DNA Damage in Neurodegenerative Diseases

PALB2 in Neuronal Function

Mechanisms of Neurodegeneration

Disease Associations

Fanconi Anemia

Hereditary Cancer Syndromes

Neurological Implications

Therapeutic Approaches

Cancer Prevention and Treatment

Neurodegeneration

Molecular Interactions

Protein Partners

Signaling Networks

Genetics

Mutation Spectrum

Genotype-Phenotype

Research Models

Cellular Models

Animal Models

Evolutionary Conservation

Cross-Links

References

Pathway Diagram

💬 Discussion