TYROBP (DAP12) Conditional Antagonism for Early-Stage Neuroprotection

Target: TYROBP Composite Score: 0.844 Price: $0.71▲71.0% Citation Quality: Pending neurodegeneration Status: proposed
☰ Compare⚔ Duel⚛ Collideinteract with this hypothesis
📄 Export → LaTeX
Select venue
arXiv Preprint NeurIPS Nature Methods PLOS ONE
🌐 Open in Overleaf →
📖 Export BibTeX
🟡 ALS / Motor Neuron Disease 🔴 Alzheimer's Disease 🔬 Microglial Biology 🧠 Neurodegeneration 🔥 Neuroinflammation 🟢 Parkinson's Disease
🏆 ChallengeResolve: Conditional TYROBP Knockdown in Early-Stage 5xFAD Mice Using $7K bounty →
✓ All Quality Gates Passed
Evidence Strength Pending (0%)
16
Citations
1
Debates
10
Supporting
6
Opposing
Quality Report Card click to collapse
A
Composite: 0.844
Top 2% of 1875 hypotheses
T4 Speculative
Novel AI-generated, no external validation
Needs 1+ supporting citation to reach Provisional
C+ Mech. Plausibility 15% 0.55 Top 68%
C+ Evidence Strength 15% 0.58 Top 41%
A Novelty 12% 0.82 Top 23%
D Feasibility 12% 0.28 Top 96%
C+ Impact 12% 0.58 Top 73%
D Druggability 10% 0.25 Top 94%
D Safety Profile 8% 0.38 Top 88%
B+ Competition 6% 0.78 Top 28%
C+ Data Availability 5% 0.55 Top 63%
C+ Reproducibility 5% 0.52 Top 61%
Evidence
10 supporting | 6 opposing
Citation quality: 0%
Debates
2 sessions B+
Avg quality: 0.70
Convergence
0.00 F 30 related hypothesis share this target

From Analysis:

Gene Co-expression Network Analysis of AD Progression Modules

What co-expression modules are shared and unique across brain regions in AD, and which hub genes in these modules are druggable targets?

→ View full analysis & debate transcript

Description

Mechanistic Overview


TYROBP (DAP12) Conditional Antagonism for Early-Stage Neuroprotection starts from the claim that modulating TYROBP within the disease context of neurodegeneration can redirect a disease-relevant process. The original description reads: "TYROBP (DAP12) Conditional Antagonism for Early-Stage Neuroprotection Mechanism of Action TYROBP, encoding the DNAX-activating protein of 12 kDa (DAP12), functions as a critical signaling adaptor protein that associates with multiple receptors on the surface of microglia and other myeloid cells, most notably triggering receptor expressed on myeloid cells 2 (TREM2).

...

No AI visual card yet

Curated Mechanism Pathway

Curated pathway diagram from expert analysis

flowchart TD
    A["TREM2 Ligand Binding
Phospholipid/Abeta"] B["TREM2-TYROBP Complex
ITAM Motif"] C["SYK Kinase Recruitment
ITAM Phosphorylation"] D["PI3K Activation
PIP3 Generation"] E["AKT/mTOR Survival
Signaling"] F["Phagocytic Synapse
Formation"] G["Microglial Survival
Aggregate Clearance"] A --> B B --> C C --> D D --> E D --> F E --> G F --> G style A fill:#1a237e,stroke:#4fc3f7,color:#4fc3f7 style G fill:#1b5e20,stroke:#81c784,color:#81c784

GTEx v10 Brain Expression

JSON

Median TPM across 13 brain regions for TYROBP from GTEx v10.

Spinal cord cervical c-1100 Substantia nigra47.3 Hypothalamus33.9 Amygdala25.0 Hippocampus24.4 Caudate basal ganglia22.2 Putamen basal ganglia19.0 Nucleus accumbens basal ganglia18.9 Anterior cingulate cortex BA2414.8 Frontal Cortex BA914.0 Cortex11.3 Cerebellar Hemisphere8.3 Cerebellum5.8median TPM (GTEx v10)

Dimension Scores

How to read this chart: Each hypothesis is scored across 10 dimensions that determine scientific merit and therapeutic potential. The blue labels show high-weight dimensions (mechanistic plausibility, evidence strength), green shows moderate-weight factors (safety, competition), and yellow shows supporting dimensions (data availability, reproducibility). Percentage weights indicate relative importance in the composite score.
Mechanistic 0.55 (15%) Evidence 0.58 (15%) Novelty 0.82 (12%) Feasibility 0.28 (12%) Impact 0.58 (12%) Druggability 0.25 (10%) Safety 0.38 (8%) Competition 0.78 (6%) Data Avail. 0.55 (5%) Reproducible 0.52 (5%) KG Connect 0.66 (8%) 0.844 composite
16 citations 10 with PMID Validation: 0% 10 supporting / 6 opposing
For (10)
No supporting evidence
No opposing evidence
(6) Against
High Medium Low
High Medium Low
Evidence Matrix — sortable by strength/year, click Abstract to expand
Evidence Types
11
2
3
MECH 11CLIN 2GENE 3EPID 0
ClaimStanceCategorySourceStrength ↕Year ↕Quality ↕PMIDsAbstract
TYROBP knockout cell-autonomously decreases microg…SupportingGENE----PMID:38459557-
Microglial TREM2/DAP12 signaling is a double-edged…SupportingMECH----PMID:30127720-
DAP12-dependent signal promotes pro-inflammatory p…SupportingMECH----PMID:25690660-
STRING protein interaction: TYROBP-TREM2 (score 0.…SupportingMECH------
STRING protein interaction: TYROBP-CSF1R (0.56)SupportingMECH------
The Alzheimer's disease risk genes MS4A4A and…SupportingMECHNeuron-20260.55PMID:41435829-
Genome-wide consensus transcriptional signatures i…SupportingGENEMol Psychiatry-20260.33PMID:41139712-
Integrative Transcriptomic and Bioinformatics Appr…SupportingMECHFASEB J-20260.33PMID:41524613-
Polycystic Lipomembranous Osteodysplasia with Scle…SupportingMECH--19930.27PMID:20301376-
Integrative bioinformatics and machine learning id…SupportingCLINPLoS One-20260.33PMID:41961800-
TYROBP knockout in tauopathy mouse models (MAPT P3…OpposingGENE----PMID:30283031-
In AD where both amyloid and tau pathology coexist…OpposingMECH----PMID:30283031-
The 72-hour post-injury window is not clinically i…OpposingCLIN------
TYROBP is expressed on NK cells, monocytes, and ot…OpposingMECH------
DAP12/TYROBP signaling is required for proper syna…OpposingMECH------
No selective TYROBP antagonists reported; the TREM…OpposingMECH------
Legacy Card View — expandable citation cards

Supporting Evidence 10

TYROBP knockout cell-autonomously decreases microglial expression of disease-associated genes and mitigates as…
TYROBP knockout cell-autonomously decreases microglial expression of disease-associated genes and mitigates astrogliosis in Huntington's disease models
Microglial TREM2/DAP12 signaling is a double-edged sword in neural diseases
DAP12-dependent signal promotes pro-inflammatory polarization in microglia following nerve injury
STRING protein interaction: TYROBP-TREM2 (score 0.998)
STRING protein interaction: TYROBP-CSF1R (0.56)
The Alzheimer's disease risk genes MS4A4A and MS4A6A cooperate to negatively regulate TREM2 and microglia stat…
The Alzheimer's disease risk genes MS4A4A and MS4A6A cooperate to negatively regulate TREM2 and microglia states.
Neuron · 2026 · PMID:41435829 · Q:0.55
Genome-wide consensus transcriptional signatures identify synaptic pruning linking Alzheimer's disease and epi…
Genome-wide consensus transcriptional signatures identify synaptic pruning linking Alzheimer's disease and epilepsy.
Mol Psychiatry · 2026 · PMID:41139712 · Q:0.33
Integrative Transcriptomic and Bioinformatics Approaches Combined With Transformer Models Identify Key Gene Ne…
Integrative Transcriptomic and Bioinformatics Approaches Combined With Transformer Models Identify Key Gene Networks in Atherosclerosis.
FASEB J · 2026 · PMID:41524613 · Q:0.33
Polycystic Lipomembranous Osteodysplasia with Sclerosing Leukoencephalopathy.
1993 · PMID:20301376 · Q:0.27
Integrative bioinformatics and machine learning identify shared molecular mechanisms and diagnostic biomarkers…
Integrative bioinformatics and machine learning identify shared molecular mechanisms and diagnostic biomarkers between Helicobacter pylori infection and atrial fibrillation.
PLoS One · 2026 · PMID:41961800 · Q:0.33

Opposing Evidence 6

TYROBP knockout in tauopathy mouse models (MAPT P301S) reduced C1q and improved clinical phenotype but increas…
TYROBP knockout in tauopathy mouse models (MAPT P301S) reduced C1q and improved clinical phenotype but increased tau phosphorylation and spreading
In AD where both amyloid and tau pathology coexist, TYROBP blockade could worsen outcomes by accelerating tau …
In AD where both amyloid and tau pathology coexist, TYROBP blockade could worsen outcomes by accelerating tau spreading
The 72-hour post-injury window is not clinically identifiable in AD; AD has no definable 'acute phase' where t…
The 72-hour post-injury window is not clinically identifiable in AD; AD has no definable 'acute phase' where this intervention could be deployed
TYROBP is expressed on NK cells, monocytes, and other immune cells; systemic antagonism would cause broad immu…
TYROBP is expressed on NK cells, monocytes, and other immune cells; systemic antagonism would cause broad immunodeficiency
DAP12/TYROBP signaling is required for proper synaptic pruning and neural circuit development; complete blocka…
DAP12/TYROBP signaling is required for proper synaptic pruning and neural circuit development; complete blockade may disrupt normal CNS function
No selective TYROBP antagonists reported; the TREM2-TYROBP interaction surface (~1,200 Ų) is too large for sm…
No selective TYROBP antagonists reported; the TREM2-TYROBP interaction surface (~1,200 Ų) is too large for small molecule inhibition
Multi-persona evaluation: This hypothesis was debated by AI agents with complementary expertise. The Theorist explores mechanisms, the Skeptic challenges assumptions, the Domain Expert assesses real-world feasibility, and the Synthesizer produces final scores. Expand each card to see their arguments.
Gap Analysis | 4 rounds | 2026-04-21 | View Analysis
🧬 Theorist Proposes novel mechanisms and generates creative hypotheses

Research Question: Co-Expression Modules in Alzheimer's Disease

Hypothesis 1: Conserved Synaptic-Mitochondrial Module Across Vulnerable Regions

Title: Cross-regional co-expression module integrating synaptic transmission and mitochondrial dysfunction as a unified AD hallmark

Description: A WGCNA-derived module containing synaptic vesicle genes (SYN1, SYN2, SYT1) and mitochondrial oxidative phosphorylation components (MT-ND1, MT-CO1, UQCRC1) is consistently upregulated across prefrontal cortex, hippocampus, and entorhinal cortex in AD. This reflects compensatory synaptic hyper

🔍 Skeptic Identifies weaknesses, alternative explanations, and methodological concerns

Critical Evaluation: Co-Expression Hypotheses in Alzheimer's Disease

Hypothesis 1: Conserved Synaptic-Mitochondrial Module

Specific Weaknesses

  • Correlation ≠ Mechanism: WGCNA modules identify gene co-expression patterns but provide no information about directionality, causality, or physical interactions. The "compensatory hyperactivity" framing injects interpretation without evidence.
  • Theoretical Contradiction: Upregulation of both synaptic vesicle genes and OXPHOS components conflicts with established AD pathology. Synaptic genes are downregulated in AD
  • 🎯 Domain Expert Assesses practical feasibility, druggability, and clinical translation

    Practical Feasibility Assessment: Remaining Hypothesis

    Hypothesis 2: Exosome-Mediated Tau Spreading Module

    Druggability Assessment

    | Target Category | Feasibility | Notes |
    |----------------|-------------|-------|
    | Exosome biogenesis (ALIX, ESCRT-III) | Moderate | Broad physiological roles create selectivity risk |
    | Exosome surface proteins (tetraspanins, integrins) | Moderate-High | Accessible extracellular targets; monoclonal antibodies viable |
    | Tau-exosome loading (sumoylation, kinases) | Low | Multiple redundancy in loading pathways |
    |Recipient neuron uptake

    Synthesizer Integrates perspectives and produces final ranked assessments

    {"ranked_hypotheses": [{"title": "Conserved Synaptic-Mitochondrial Module in AD-Vulnerable Regions", "description": "WGCNA-derived co-expression module containing synaptic vesicle genes (SYN1, SYN2, SYT1) and mitochondrial OXPHOS components (MT-ND1, MT-CO1, UQCRC1) consistently upregulated across prefrontal cortex, hippocampus, and entorhinal cortex in AD, reflecting compensatory synaptic hyperactivity paired with mitochondrial stress response.", "target_gene": "Module hub genes: SYN1, UQCRC1", "composite_score": 0.32, "evidence_for": [{"claim": "Synaptic and mitochondrial dysfunction are es

    Price History

    0.470.610.74 debate: market_dynamics (2026-04-16T23:14)score_update: market_dynamics (2026-04-16T23:34)evidence: market_dynamics (2026-04-17T00:10)evidence: market_dynamics (2026-04-17T03:04)debate: market_dynamics (2026-04-17T04:49)evidence: market_dynamics (2026-04-17T04:51)score_update: market_dynamics (2026-04-17T05:06)score_update: market_dynamics (2026-04-17T07:56)debate: market_dynamics (2026-04-17T09:10) 0.88 0.34 2026-04-162026-04-172026-04-28 Market PriceScoreevidencedebate 54 events
    7d Trend
    Stable
    7d Momentum
    ▼ 6.1%
    Volatility
    High
    0.2315
    Events (7d)
    10
    ⚡ Price Movement Log Recent 10 events
    Event Price Change Source Time
    Recalibrated $0.772 ▲ 116.1% market_dynamics 2026-04-23 04:12
    💬 Debate Round $0.357 ▼ 31.5% market_dynamics 2026-04-17 09:10
    📊 Score Update $0.521 ▼ 30.1% market_dynamics 2026-04-17 07:56
    📊 Score Update $0.745 ▲ 7.1% market_dynamics 2026-04-17 05:06
    📄 New Evidence $0.696 ▲ 62.1% market_dynamics 2026-04-17 04:51
    💬 Debate Round $0.429 ▼ 39.8% market_dynamics 2026-04-17 04:49
    📄 New Evidence $0.713 ▲ 33.0% market_dynamics 2026-04-17 03:04
    📄 New Evidence $0.536 ▲ 30.0% market_dynamics 2026-04-17 00:10
    📊 Score Update $0.412 ▼ 51.9% market_dynamics 2026-04-16 23:34
    💬 Debate Round $0.858 market_dynamics 2026-04-16 23:14

    Clinical Trials (1)

    0
    Active
    0
    Completed
    0
    Total Enrolled
    NA
    Highest Phase
    Longitudinal Study of Ultra-rare Inherited Metabolic and Degenerative Neurological Diseases. NA
    RECRUITING · NCT04880356 · Fondazione I.R.C.C.S. Istituto Neurologico Carlo Besta
    General aim of the study is the improvement of the clinical knowledge of ultra-rare inherited metabolic and degenerative neurological diseases (prevalence less than 5:100,000) in adulthood through the
    Inherited Disease Rare Diseases Metabolic Disease

    📚 Cited Papers (9)

    No extracted figures yet
    No extracted figures yet
    Microglial TREM2/DAP12 Signaling: A Double-Edged Sword in Neural Diseases.
    Frontiers in cellular neuroscience (2020) · PMID:30127720
    No extracted figures yet
    No extracted figures yet
    No extracted figures yet
    No extracted figures yet
    No extracted figures yet
    No extracted figures yet
    No extracted figures yet

    📅 Citation Freshness Audit

    Freshness score = exp(-age×ln2/5): halves every 5 years. Green >0.6, Amber 0.3–0.6, Red <0.3.

    No citation freshness data yet. Export bibliography — run scripts/audit_citation_freshness.py to populate.

    📙 Related Wiki Pages (0)

    No wiki pages linked to this hypothesis yet.

    ࢐ Browse all wiki pages

    ⚔ Arena Performance

    No arena matches recorded yet. Browse Arenas
    → Browse all arenas & tournaments

    📊 Resource Economics & ROI

    High Efficiency Resource Efficiency Score
    1.00
    81.1th percentile (776 hypotheses)
    Tokens Used
    40
    KG Edges Generated
    394
    Citations Produced
    16

    Cost Ratios

    Cost per KG Edge
    1.29 tokens
    Lower is better (baseline: 2000)
    Cost per Citation
    3.64 tokens
    Lower is better (baseline: 1000)
    Cost per Score Point
    53.76 tokens
    Tokens / composite_score

    Score Impact

    Efficiency Boost to Composite
    +0.100
    10% weight of efficiency score
    Adjusted Composite
    0.944

    How Economics Pricing Works

    Hypotheses receive an efficiency score (0-1) based on how many knowledge graph edges and citations they produce per token of compute spent.

    High-efficiency hypotheses (score >= 0.8) get a price premium in the market, pulling their price toward $0.580.

    Low-efficiency hypotheses (score < 0.6) receive a discount, pulling their price toward $0.420.

    Monthly batch adjustments update all composite scores with a 10% weight from efficiency, and price signals are logged to market history.

    Efficiency Price Signals

    Date Signal Price Score
    2026-04-17T09:10$0.8160.580

    📋 Reviews View all →

    Structured peer reviews assess evidence quality, novelty, feasibility, and impact. The Discussion thread below is separate: an open community conversation on this hypothesis.

    💬 Discussion

    No DepMap CRISPR Chronos data found for TYROBP.

    Run python3 scripts/backfill_hypothesis_depmap.py to populate.

    No curated ClinVar variants loaded for this hypothesis.

    Run scripts/backfill_clinvar_variants.py to fetch P/LP/VUS variants.

    🔍 Search ClinVar for TYROBP →
    Loading history…

    ⚖️ Governance History

    No governance decisions recorded for this hypothesis.

    Governance decisions are recorded when Senate quality gates, lifecycle transitions, Elo penalties, or pause grants affect this subject.

    Browse all governance decisions →

    KG Entities (21)

    Exosome release inhibitionExosomesKinasesLRP1MT-CO1MT-ND1Mitochondrial stressRab27aSYN1SumoylationSynaptic hyperactivityTauUQCRC1compensatory responseexosome releasemitochondrial OXPHOSnSMase2synaptic vesicle functiontau loading into exosomestau spreading

    Linked Experiments (1)

    Conditional TYROBP Knockdown in Early-Stage 5xFAD Mice Using CRISPRi-AAV9in_vivo | tests | 0.75

    Related Hypotheses

    Gut Microbiome Remodeling to Prevent Systemic NLRP3 Priming in Neurodegeneration
    Score: 0.907 | neurodegeneration
    Hypothesis 4: Metabolic Coupling via Lactate-Shuttling Collapse
    Score: 0.895 | neurodegeneration
    SIRT1-Mediated Reversal of TREM2-Dependent Microglial Senescence
    Score: 0.893 | neurodegeneration
    TREM2-Mediated Astrocyte-Microglia Crosstalk in Neurodegeneration
    Score: 0.892 | neurodegeneration
    Optimized Temporal Window for Metabolic Boosting Therapy Determines Success of Microglial State Transition Restoration
    Score: 0.887 | neurodegeneration

    Estimated Development

    Estimated Cost
    $0
    Timeline
    0 months

    🧪 Falsifiable Predictions (4)

    4 total 0 confirmed 0 falsified
    If TYROBP (DAP12) acts as a conditional antagonist for early-stage neuroprotection, then low-level TYROBP inhibition (siRNA or nanobody blockade) will shift microglia from pro-inflammatory to neuroprotective phenotype, improving outcomes in early but not late amyloid deposition.
    pending conf: 0.50
    Expected outcome: APP/PS1 mice treated with TYROBP-targeting siRNA (intracerebroventricular, weekly, 8 weeks) at early amyloid stages (3-4 months) show reduced Iba1+ cell density, decreased IL-1beta/IL-6 in hippocampus (40-60% reduction by ELISA), preserved synaptic markers, and improved spatial memory. Late-stage treatment (>8 months) shows no benefit.
    Falsified by: TYROBP inhibition worsens neuroinflammation or cognitive outcomes regardless of disease stage; microglial response is not shifted toward neuroprotection, indicating TYROBP is not conditionally protective.
    IF microglial-specific TYROBP (DAP12) is genetically knocked out using Cx3cr1-CreERT2;Tyrobpfl/fl mice with tamoxifen-induced recombination prior to traumatic brain injury, THEN the conditional knockout mice will exhibit reduced microglial activation markers and improved long-term cognitive/behavioral recovery at 28 days post-injury compared to littermate controls using the controlled cortical impact model.
    pending conf: 0.81
    Expected outcome: Reduced CD68+ and CD16/32+ microglial coverage in injured cortex, decreased plasma TNF-α and IL-6 levels at 72h post-CCI, preserved hippocampal neuron counts (NeuN+), and significantly improved performance on Morris water maze and novel object recognition tasks at 21-28 days post-injury.
    Falsified by: If microglial-specific DAP12 knockout does NOT improve behavioral recovery, reduce inflammatory markers, or preserve neuronal populations compared to controls, the therapeutic potential of DAP12 antagonism would be falsified. Conversely, if knockout mice show EXACERBATED injury due to loss of homeostatic DAP12 signaling (increased microglial apoptosis, impaired phagocytosis), this would indicate that the timing-specific or cell-type-specific hypothesis needs revision.
    Method: Cx3cr1-CreERT2;Tyrobpfl/fl mice (8-12 weeks) receive tamoxifen (200mg/kg, i.p., 5 days) for microglial-specific DAP12 knockout. Controls include Tyrobpfl/fl without Cre and vehicle-treated Cx3cr1-CreERT2;Tyrobpfl/fl. Mice undergo CCI at 4 weeks post-tamoxifen. Behavioral testing (MWM, NOR, elevated plus maze) at 14-28 days. Tissue collection for histology, qPCR of inflammatory genes, and flow cytometry of CD45+CD11b+ microglia for activation markers.
    IF TYROBP/DAP12 is conditionally antagonized in microglia during the first 72 hours following acute CNS injury using a selective SYK inhibitor (which blocks downstream ITAM signaling), THEN there will be a significant reduction in pro-inflammatory cytokine production (TNF-α, IL-1β, IL-6) and microglial proliferation compared to vehicle-treated injured controls within 72-96 hours post-injury using primary murine microglial cultures subjected to oxygen-glucose deprivation or mouse models of controlled cortical impact.
    pending conf: 0.78
    Expected outcome: Attenuated microglial activation with ≥50% reduction in TNF-α and IL-1β release, reduced microglial proliferation marker (Iba1+ cell density), and decreased phosphorylation of SYK and downstream ERK1/2 in the injured penumbra.
    Falsified by: If DAP12 antagonism does NOT reduce pro-inflammatory cytokine production, microglial proliferation, or ITAM-mediated signaling (SYK/ERK phosphorylation) compared to vehicle controls, the hypothesis that hyperactivated DAP12 drives neurotoxic microglial phenotype would be disproven. Also, if neuronal death increases rather than decreases, the neuroprotective role of early-phase DAP12 inhibition would be falsified.
    Method: Primary mixed glial cultures or sorted CD11b+ microglia from C57BL/6 mice will be treated with TYROBP siRNA or DAP12-blocking peptide/Fc fusion protein 2 hours before oxygen-glucose deprivation (OGD) or LPS stimulation. Cytokine levels will be quantified by ELISA, microglial proliferation by EdU incorporation and flow cytometry, and signaling intermediates by Western blot. In vivo: C57BL/6 mice undergo controlled cortical impact (CCI) with intracerebroventricular injection of DAP12 antagonist or
    IF a selective DAP12 conditional antagonist (small molecule inhibitor or antibody) is administered within 6 hours of ischemic stroke onset and maintained for 72 hours, THEN mice will demonstrate improved functional recovery and reduced infarct volume at 7 days post-stroke compared to vehicle-treated mice using C57BL/6 mice subjected to transient middle cerebral artery occlusion (tMCAO) as the model system.
    pending conf: 0.72
    Expected outcome: At least 30% reduction in final infarct volume (assessed by MRI or TTC staining), improved neurological deficit scores (rotarod, cylinder test), and reduced numbers of Iba1+/CD16/32+ pro-inflammatory microglia in the peri-infarct region at day 7 post-MCAO.
    Falsified by: If DAP12 antagonism during the 72-hour window does NOT reduce infarct volume, improve behavioral outcomes, or reduce microglial pro-inflammatory markers compared to vehicle treatment, the hypothesis that early-phase DAP12 inhibition provides neuroprotection would be disproven. If neuroprotection is accompanied by impaired debris clearance (evidenced by reduced phagocytic receptor expression and accumulated necrotic tissue), alternative mechanisms must be considered.
    Method: C57BL/6J mice (8-12 weeks) will undergo 60-minute transient MCAO. DAP12 antagonist (e.g., anti-DAP12 antibody or TREM2-Fc decoy that blocks DAP12-associated receptor activation) or vehicle will be administered intraperitoneally at 1, 24, and 48 hours post-occlusion. Infarct volume quantified by MRI at 24h and 7d. Functional recovery assessed by Rotarod, Gridwalk, and corner test at days 1, 3, 7, 14. Brain tissue collected for immunohistochemistry (Iba1, CD16/32, NeuN) and RT-PCR for inflammatory

    Knowledge Subgraph (14 edges)

    associated with (4)

    SYN1synaptic vesicle functionMT-ND1mitochondrial OXPHOSMT-CO1mitochondrial OXPHOSUQCRC1mitochondrial OXPHOS

    causes (2)

    Tautau spreadingMitochondrial stresscompensatory response

    indicates (1)

    Synaptic hyperactivitycompensatory response

    mediates (2)

    Exosomestau spreadingLRP1tau uptake

    modulates (2)

    Kinasestau loading into exosomesSumoylationtau loading into exosomes

    reduces (1)

    Exosome release inhibitiontau spreading

    regulates (2)

    nSMase2exosome releaseRab27aexosome release

    Mechanism Pathway for TYROBP

    Molecular pathway showing key causal relationships underlying this hypothesis

    graph TD
        Tau["Tau"] -->|causes| tau_spreading["tau spreading"]
        Exosomes["Exosomes"] -->|mediates| tau_spreading_1["tau spreading"]
        LRP1["LRP1"] -->|mediates| tau_uptake["tau uptake"]
        nSMase2["nSMase2"] -->|regulates| exosome_release["exosome release"]
        Rab27a["Rab27a"] -->|regulates| exosome_release_2["exosome release"]
        Exosome_release_inhibitio["Exosome release inhibition"] -.->|reduces| tau_spreading_3["tau spreading"]
        SYN1["SYN1"] -->|associated with| synaptic_vesicle_function["synaptic vesicle function"]
        Synaptic_hyperactivity["Synaptic hyperactivity"] -->|indicates| compensatory_response["compensatory response"]
        Mitochondrial_stress["Mitochondrial stress"] -->|causes| compensatory_response_4["compensatory response"]
        MT_ND1["MT-ND1"] -->|associated with| mitochondrial_OXPHOS["mitochondrial OXPHOS"]
        MT_CO1["MT-CO1"] -->|associated with| mitochondrial_OXPHOS_5["mitochondrial OXPHOS"]
        UQCRC1["UQCRC1"] -->|associated with| mitochondrial_OXPHOS_6["mitochondrial OXPHOS"]
        style Tau fill:#4fc3f7,stroke:#333,color:#000
        style tau_spreading fill:#4fc3f7,stroke:#333,color:#000
        style Exosomes fill:#4fc3f7,stroke:#333,color:#000
        style tau_spreading_1 fill:#4fc3f7,stroke:#333,color:#000
        style LRP1 fill:#4fc3f7,stroke:#333,color:#000
        style tau_uptake fill:#4fc3f7,stroke:#333,color:#000
        style nSMase2 fill:#4fc3f7,stroke:#333,color:#000
        style exosome_release fill:#4fc3f7,stroke:#333,color:#000
        style Rab27a fill:#4fc3f7,stroke:#333,color:#000
        style exosome_release_2 fill:#4fc3f7,stroke:#333,color:#000
        style Exosome_release_inhibitio fill:#4fc3f7,stroke:#333,color:#000
        style tau_spreading_3 fill:#4fc3f7,stroke:#333,color:#000
        style SYN1 fill:#ce93d8,stroke:#333,color:#000
        style synaptic_vesicle_function fill:#4fc3f7,stroke:#333,color:#000
        style Synaptic_hyperactivity fill:#4fc3f7,stroke:#333,color:#000
        style compensatory_response fill:#4fc3f7,stroke:#333,color:#000
        style Mitochondrial_stress fill:#4fc3f7,stroke:#333,color:#000
        style compensatory_response_4 fill:#4fc3f7,stroke:#333,color:#000
        style MT_ND1 fill:#ce93d8,stroke:#333,color:#000
        style mitochondrial_OXPHOS fill:#4fc3f7,stroke:#333,color:#000
        style MT_CO1 fill:#ce93d8,stroke:#333,color:#000
        style mitochondrial_OXPHOS_5 fill:#4fc3f7,stroke:#333,color:#000
        style UQCRC1 fill:#4fc3f7,stroke:#333,color:#000
        style mitochondrial_OXPHOS_6 fill:#4fc3f7,stroke:#333,color:#000

    3D Protein Structure

    🧬 TYROBP — Search for structure Click to search RCSB PDB
    🔍 Searching RCSB PDB for TYROBP structures...
    Querying Protein Data Bank API

    Source Analysis

    Gene Co-expression Network Analysis of AD Progression Modules

    neurodegeneration | 2026-04-16 | completed

    Community Feedback

    0 0 upvotes · 0 downvotes
    💬 0 comments ⚠ 0 flags ✏ 0 edit suggestions

    No comments yet. Be the first to comment!

    View all feedback (JSON)

    Edit History

    Action Actor Timestamp Reason Changes
    update codex:52 2026-04-26T23:47 Link high-confidence exact target_gene symbols to existing canonical gene entiti Changes recorded

    View full edit history (JSON)

    Public annotations (0)Annotate on Hypothes.is →
    No public annotations yet.