ID: h-f11788656b
Hypothesis
YAP/TAZ Mechanosensing Cooperates with NF-κB to Amplify SPP1 Transcription in Perivascular Fibroblasts
YAP/TAZ Mechanosensing Cooperates with NF-κB to Amplify SPP1 Transcription in Perivascular Fibroblasts starts from the claim that modulating SPP1 within the disease context of neurodegeneration can redirect a disease-relevant process.
EvidencePending (0%)📖 0 cit🗣 1 debates✓ 5 support✗ 3 oppose
✓ All Quality Gates Passed
🧪 Overview
Mechanistic Overview
YAP/TAZ Mechanosensing Cooperates with NF-κB to Amplify SPP1 Transcription in Perivascular Fibroblasts starts from the claim that modulating SPP1 within the disease context of neurodegeneration can redirect a disease-relevant process. The original description reads: "## Mechanistic Overview YAP/TAZ Mechanosensing Cooperates with NF-κB to Amplify SPP1 Transcription in Perivascular Fibroblasts starts from the claim that modulating SPP1 within the disease context of neurodegeneration can redirect a disease-relevant process. The original description reads: "YAP/TAZ mechanosensing cooperating with NF-κB to amplify SPP1 transcription in perivascular fibroblasts proposes that the mechanotransduction transcription factors YAP (Yes-associated protein) and TAZ (transcriptional coactivator with PDZ-binding motif) — which are activated by stiffness changes in the perivascular extracellular matrix as amyloid deposits accumulate — synergize with NF-κB signaling to drive aberrantly high SPP1 expression in perivascular fibroblasts....
🧬 Mechanism
🔗 Mechanism from KG for SPP1
Auto-built from this analysis's top knowledge-graph edges.
graph TD
A__oligomers["Aβ oligomers"] -->|causes| SPP1["SPP1"]
Perivascular_macrophages["Perivascular macrophages"] -->|associated with| SPP1_1["SPP1"]
A__oligomers_2["Aβ oligomers"] -->|causes| SPP1_upregulation["SPP1 upregulation"]
Perivascular_macrophages_3["Perivascular macrophages"] -->|regulates| SPP1_4["SPP1"]
IL_1_["IL-1β"] -->|causes| SPP1_5["SPP1"]
STAT3["STAT3"] -->|activates| SPP1_6["SPP1"]
PDGF_BB["PDGF-BB"] -->|regulates| SPP1_7["SPP1"]
YAP_TAZ["YAP/TAZ"] -->|activates| SPP1_8["SPP1"]
TREM2["TREM2"] -->|regulates| SPP1_9["SPP1"]
NF__B["NF-κB"] -->|activates| SPP1_10["SPP1"]
CSF1R["CSF1R"] -->|regulates| SPP1_11["SPP1"]
NF__B_12["NF-κB"] -->|regulates| SPP1_transcription["SPP1 transcription"]
IL_1__13["IL-1β"] -->|regulates| SPP1_14["SPP1"]
YAP_TAZ_15["YAP/TAZ"] -->|regulates| SPP1_transcription_16["SPP1 transcription"]
style A__oligomers fill:#4fc3f7,stroke:#333,color:#000
style SPP1 fill:#ce93d8,stroke:#333,color:#000
style Perivascular_macrophages fill:#4fc3f7,stroke:#333,color:#000
style SPP1_1 fill:#ce93d8,stroke:#333,color:#000
style A__oligomers_2 fill:#4fc3f7,stroke:#333,color:#000
style SPP1_upregulation fill:#4fc3f7,stroke:#333,color:#000
style Perivascular_macrophages_3 fill:#4fc3f7,stroke:#333,color:#000
style SPP1_4 fill:#ce93d8,stroke:#333,color:#000
style IL_1_ fill:#4fc3f7,stroke:#333,color:#000
style SPP1_5 fill:#ce93d8,stroke:#333,color:#000
style STAT3 fill:#4fc3f7,stroke:#333,color:#000
style SPP1_6 fill:#ce93d8,stroke:#333,color:#000
style PDGF_BB fill:#4fc3f7,stroke:#333,color:#000
style SPP1_7 fill:#ce93d8,stroke:#333,color:#000
style YAP_TAZ fill:#4fc3f7,stroke:#333,color:#000
style SPP1_8 fill:#ce93d8,stroke:#333,color:#000
style TREM2 fill:#4fc3f7,stroke:#333,color:#000
style SPP1_9 fill:#ce93d8,stroke:#333,color:#000
style NF__B fill:#81c784,stroke:#333,color:#000
style SPP1_10 fill:#ce93d8,stroke:#333,color:#000
style CSF1R fill:#4fc3f7,stroke:#333,color:#000
style SPP1_11 fill:#ce93d8,stroke:#333,color:#000
style NF__B_12 fill:#81c784,stroke:#333,color:#000
style SPP1_transcription fill:#4fc3f7,stroke:#333,color:#000
style IL_1__13 fill:#4fc3f7,stroke:#333,color:#000
style SPP1_14 fill:#ce93d8,stroke:#333,color:#000
style YAP_TAZ_15 fill:#4fc3f7,stroke:#333,color:#000
style SPP1_transcription_16 fill:#4fc3f7,stroke:#333,color:#000⚖️ Evidence
⚖️ Evidence Matrix5 supports3 contradicts
Supports
YAP/TAZ are activated by stiff substrates in perivascular fibroblasts and synergize with NF-κB to drive SPP1 transcription; vascular stiffening in AD provides the mechanical signal for YAP/TAZ activation
Supports
Perivascular fibroblasts are a major source of SPP1 in the brain; SPP1 from fibroblasts (not microglia) is the dominant driver of perivascular inflammation in AD models
Supports
SPP1 amplification of neuroinflammation requires both αvβ3 integrin signaling and NF-κB; fibroblasts are pre-conditioned for high SPP1 output by chronic mechanical stress
Supports
Perivascular drainage efficiency declines with age and Aβ deposition; stiff vessels show reduced perivascular clearance and increased SPP1 in the perivascular space
Supports
YAP-TEAD and NF-κB co-occupy the SPP1 promoter and synergistically activate transcription; TEAD binding site mutation reduces SPP1 expression by 80%
📖 Linked Papers
No linked papers recorded for this hypothesis yet.
🏥 Translation
🧬 3D Protein Structure — SPP1
No curated PDB or AlphaFold mapping for SPP1 yet. Search RCSB →
🧠 GTEx v10 Brain ExpressionJSON
Median TPM across 13 brain regions for SPP1 from GTEx v10.
💉 Clinical Trials (2)
1
Active
Active
1
Completed
Completed
0
Total Enrolled
Total Enrolled
Phase I
Highest Phase
Highest Phase
Completed·NCT03586284
Recruiting·NCT03889652
No curated ClinVar variants loaded for this hypothesis.
Run scripts/backfill_clinvar_variants.py to fetch P/LP/VUS variants.
No DepMap CRISPR Chronos data found for SPP1.
Run python3 scripts/backfill_hypothesis_depmap.py to populate.
💰 Estimated Development
Cost
$0
Timeline
—
🏆 Tournament
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📊 Market Indicators
7d Trend
↘
Falling
7d Momentum
▼ 2.4%
Volatility
High
0.1255
Events (7d)
5
Price History
▲18.3%💾 Resource Usage
LLM Tokens
25,514
$0.0765
Total Cost
$0.0765
🔮 Predictions
🔎 Predictions vs Observations2 predictions · 0 with recorded observations
| Prediction | Predicted | Observed | Status | Conf |
|---|---|---|---|---|
| IF perivascular fibroblasts cultured on stiff ECM (40 kPa, mimicking amyloid-deposited brain parenchyma) receive both YAP/TAZ knockdown (siRNA) and NF-κB inhibition (BAY 11-7082, 5 μM), THEN SPP1 prom | Synergistic suppression of SPP1 promoter luciferase activity (≥70%) with dual inhibition vs. partial suppression with single pathway inhibition; chromatin immun | — no observation — | pending | 0.70 |
| IF YAP/TAZ activity is pharmacologically inhibited (verteporfin, 10 mg/kg i.p., daily for 4 weeks) in 5xFAD amyloid-depositing mice, THEN cerebral perivascular fibroblast SPP1 mRNA will decrease by ≥5 | ≥50% reduction in SPP1 mRNA in isolated perivascular fibroblasts (qRT-PCR), with accompanying reduction in CD68+ microglial clusters near blood vessels (IHC, 40 | — no observation — | pending | 0.65 |
🔮 Falsifiable Predictions (2)
pendingconf 70%
IF perivascular fibroblasts cultured on stiff ECM (40 kPa, mimicking amyloid-deposited brain parenchyma) receive both YAP/TAZ knockdown (siRNA) and NF-κB inhibition (BAY 11-7082, 5 μM), THEN SPP1 promoter activity will be suppressed to a greater extent (≥70% reduction) than either intervention alone
Predicted outcome: Synergistic suppression of SPP1 promoter luciferase activity (≥70%) with dual inhibition vs. partial suppression with single pathway inhibition; chrom
Falsification: Dual inhibition yields ≤50% SPP1 suppression (similar to single inhibition), indicating YAP/TAZ and NF-κB converge on SPP1 through independent pathways rather than cooperatively
pendingconf 65%
IF YAP/TAZ activity is pharmacologically inhibited (verteporfin, 10 mg/kg i.p., daily for 4 weeks) in 5xFAD amyloid-depositing mice, THEN cerebral perivascular fibroblast SPP1 mRNA will decrease by ≥50% relative to vehicle-treated 5xFAD mice, within 4 weeks of treatment initiation.
Predicted outcome: ≥50% reduction in SPP1 mRNA in isolated perivascular fibroblasts (qRT-PCR), with accompanying reduction in CD68+ microglial clusters near blood vessel
Falsification: SPP1 mRNA remains unchanged or increases despite YAP/TAZ inhibition; no change in neuroinflammatory markers suggests SPP1 is regulated independently of YAP/TAZ
📖 References (6)
- The global soil community and its influence on biogeochemistry.["Crowther et al.. Science (New York, N.Y.) (2019)
- Global Outcome Assessment Life-long after stroke in young adults initiative-the GOAL initiative: study protocol and rationale of a multicentre retrospective individual patient data meta-analysis.["Ekker et al.. BMJ open (2019)
- Contrasting response of coexisting plant's water-use patterns to experimental precipitation manipulation in an alpine grassland community of Qinghai Lake watershed, China.["Wu et al.. PloS one (2018)
- Grain development and endogenous hormones in summer maize (Zea mays L.) submitted to different light conditions.["Gao et al.. International journal of biometeorology (2018)
- NTRK1 is a positive regulator of YAP oncogenic function.["Yang et al.. Oncogene (2019)
- Method of the Year 2020: spatially resolved transcriptomics.[]. Nature methods (2021)
▸Metadatasource: v1_phase_c_backfill · origin_type: debate_synthesizer
| source | v1_phase_c_backfill |
| origin_type | debate_synthesizer |
| _schema_version | 1 |
📊 Evidence Profile
Evidence Balance
+0%
Certainty
0%
Debates
0
Incoming
0
Outgoing
0
0 supporting
0 contradicting
0 neutral
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