gene

PNKP

Entity Detail — Knowledge Graph Node

Understanding Entity Pages

This page aggregates everything SciDEX knows about PNKP: its mechanistic relationships (Knowledge Graph edges), hypotheses targeting it, analyses mentioning it, and supporting scientific papers. The interactive graph below shows its immediate neighbors. All content is AI-synthesized from peer-reviewed literature.

44Connections
0Hypotheses
0Analyses
30Outgoing
14Incoming

Summary

DNA repair enzyme with dual kinase/phosphatase activity essential for neuronal genomic integrity and linked to ataxia and Parkinson's disease

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🧬 Gene Info
Gene SymbolPNKP
Full NamePNKP - Polynucleotide Kinase 3'-Phosphatase
AliasesPage for PNKP Protein
Chromosome19q13.33
Protein TypeGene
Functionis a critical DNA repair enzyme that plays an essential role in maintaining genomic integrity in post-mitotic neurons.
Molecular Weight47 kDa
Amino Acids515 aa
Exons19
UniProt IDQ96T60
NCBI Gene ID11277
Ensembl IDENSG00000136717
GeneCardsPNKP
Human Protein AtlasPNKP
Associated DiseasesParkinson's disease
InteractionsFEN1, XPF, XRCC1, XPG, TDP1, SETX
KG Connections44 knowledge graph edges
DatabasesGeneCardsHPASTRING
🔮 Predicted Structure: PNKP — AlphaFold Q96T60 Click to expand

AI-predicted structure from AlphaFold | Powered by Mol*

Wiki Pages (14)

Knowledge base pages for this entity

Canonical Page

PNKP - Polynucleotide Kinase 3'-Phosphatase

gene · 2320 words

Non-Homologous End Joining in Neurodegeneration

mechanism · 3995 words

ataxia-telangiectasia

disease · 3097 words

FEN1 — Flap Endonuclease 1

gene · 2004 words

ERCC5 (XPG) Gene — Excision Repair Cross-Complementation Group 5

gene · 1930 words

UNG Gene

gene · 1801 words

Pathway Diagram

graph TD
    PNKP["<b>PNKP</b>"]
    Cancer{"Cancer"}
    PNKP -->|"activates"| Cancer
    Als{"Als"}
    PNKP -->|"activates"| Als
    ALS{"ALS"}
    PNKP -->|"activates"| ALS
    FEN1["FEN1"]
    PNKP -->|"activates"| FEN1
    XPF["XPF"]
    PNKP -->|"activates"| XPF
    XRCC1["XRCC1"]
    PNKP -->|"activates"| XRCC1
    XPG["XPG"]
    PNKP -->|"activates"| XPG
    TDP1["TDP1"]
    PNKP -->|"activates"| TDP1
    DNA["DNA"]
    PNKP -->|"activates"| DNA
    SETX["SETX"]
    PNKP -->|"activates"| SETX
    NEURODEGENERATIVE_DISEASES["NEURODEGENERATIVE DISEASES"]
    PNKP -->|"activates"| NEURODEGENERATIVE_DISEASES
    CANCER["CANCER"]
    PNKP -->|"activates"| CANCER
    XPG -->|"activates"| PNKP
    SETX -->|"activates"| PNKP
    TDP1 -->|"activates"| PNKP
    XPF -->|"activates"| PNKP
    FEN1 -->|"activates"| PNKP
    style PNKP fill:#1a3a4a,stroke:#4fc3f7,stroke-width:3px,color:#e0e0e0

Outgoing (30)

TargetRelationTypeStr
ds-83b31ef18d49provides_data_fordataset1.00
TOP1involved_inprotein0.80
Canceractivatesdisease0.65
Alsactivatesdisease0.65
ALSactivatesdisease0.65

Incoming (14)

SourceRelationTypeStr
ds-83b31ef18d49data_indataset1.00
XPGactivatesgene0.60
SETXactivatesgene0.60
TDP1activatesgene0.60
XPFactivatesgene0.60

Targeting Hypotheses (0)

Hypotheses where this entity is a therapeutic target

HypothesisScoreDiseaseAnalysis
No targeting hypotheses

Mentioning Analyses (0)

Scientific analyses that reference this entity

No analyses mention this entity

Related Papers (0)

Scientific publications cited in analyses involving this entity

Title & PMIDAuthorsJournalYearCitations
No papers found