Entity Detail — Knowledge Graph Node
This page aggregates everything SciDEX knows about TRIM28: its mechanistic relationships (Knowledge Graph edges), hypotheses targeting it, analyses mentioning it, and supporting scientific papers. The interactive graph below shows its immediate neighbors. All content is AI-synthesized from peer-reviewed literature.
TRIM28 is a protein involved in neurodegeneration research. Key relationships include: activates, inhibits, implicated in. Associated with Cancer, Carcinoma, Tumor. Connected to 16 entities in the SciDEX knowledge graph.
| Gene Symbol | TRIM28 |
| Full Name | Transcriptional Intermediary Factor 1 Beta (TIF1β) |
| Aliases | Transcriptional Intermediary Factor 1 Beta |
| Protein Family | TRIM family, transcriptional co-repressors |
| Function | Upon KRAB-ZFP binding to DNA, TRIM28 is recruited through interaction with the KRAB domain. |
| Subcellular Localization | Nucleus (predominantly), also in cytoplasm |
| Molecular Weight | 110 kDa (835 amino acids) |
| Amino Acids | 835 aa |
| Pathways | Ferroptosis |
| UniProt ID | Q13263 |
| GeneCards | TRIM28 |
| Human Protein Atlas | TRIM28 |
| Protein Name | Transcriptional Intermediary Factor 1 Beta (TIF1β) |
| Gene | TRIM28 |
| PDB Structures | 2JSS, 2L3V, 4DT3, 5YJC |
| Associated Diseases | neurodegeneration |
| Interactions | SLC7A11, STAT6, HDAC5, UBIQUITIN, FERROPTOSIS, CANCER |
| KG Connections | 28 knowledge graph edges |
| Databases | GeneCardsNCBI GeneHPASTRING |
Knowledge base pages for this entity
graph TD
TRIM28["<b>TRIM28</b>"]
Tumor{"Tumor"}
TRIM28 -->|"activates"| Tumor
Carcinoma{"Carcinoma"}
TRIM28 -->|"activates"| Carcinoma
Cancer{"Cancer"}
TRIM28 -->|"activates"| Cancer
SLC7A11["SLC7A11"]
TRIM28 -->|"activates"| SLC7A11
STAT6["STAT6"]
TRIM28 -->|"activates"| STAT6
HDAC5["HDAC5"]
TRIM28 -->|"activates"| HDAC5
Ferroptosis(["Ferroptosis"])
TRIM28 -->|"activates"| Ferroptosis
FERROPTOSIS["FERROPTOSIS"]
TRIM28 -->|"activates"| FERROPTOSIS
CANCER["CANCER"]
TRIM28 -->|"activates"| CANCER
TRIM28 -->|"inhibits"| HDAC5
neurodegeneration["neurodegeneration"]
TRIM28 -->|"implicated in"| neurodegeneration
CANCER -->|"activates"| TRIM28
FERROPTOSIS -->|"activates"| TRIM28
SLC7A11 -->|"activates"| TRIM28
STAT6 -->|"activates"| TRIM28
AND["AND"]
AND -->|"activates"| TRIM28
HDAC5 -->|"activates"| TRIM28
style TRIM28 fill:#1a3a4a,stroke:#4fc3f7,stroke-width:3px,color:#e0e0e0| Target | Relation | Type | Str |
|---|---|---|---|
| Tumor | activates | disease | 0.65 |
| Carcinoma | activates | disease | 0.65 |
| Cancer | activates | disease | 0.65 |
| Als | interacts_with | disease | 0.65 |
| Cancer | interacts_with | disease | 0.65 |
| SLC7A11 | activates | gene | 0.60 |
| STAT6 | activates | gene | 0.60 |
| HDAC5 | activates | gene | 0.60 |
| UBIQUITIN | interacts_with | gene | 0.60 |
| Ferroptosis | activates | pathway | 0.60 |
| FERROPTOSIS | activates | gene | 0.60 |
| CANCER | activates | gene | 0.60 |
| AND | activates | gene | 0.60 |
| HDAC5 | inhibits | protein | 0.56 |
| WAS | activates | protein | 0.50 |
| Source | Relation | Type | Str |
|---|---|---|---|
| HDAC5 | phosphorylates | entity | 0.60 |
| SLC7A11 | activates | gene | 0.60 |
| STAT6 | activates | gene | 0.60 |
| HDAC5 | activates | gene | 0.60 |
| RAD18 | interacts_with | gene | 0.60 |
| CANCER | activates | gene | 0.60 |
| FERROPTOSIS | activates | gene | 0.60 |
| SIK1 | activates | gene | 0.60 |
| AND | activates | gene | 0.60 |
| DNA | interacts_with | gene | 0.60 |
| SLC7A1 | co_discussed | gene | 0.50 |
| STING | co_discussed | gene | 0.50 |
| TRIM2 | co_discussed | gene | 0.50 |
Hypotheses where this entity is a therapeutic target
| Hypothesis | Score | Disease | Analysis |
|---|---|---|---|
| No targeting hypotheses | |||
Scientific analyses that reference this entity
No analyses mention this entity
Scientific publications cited in analyses involving this entity
| Title & PMID | Authors | Journal | Year | Citations |
|---|---|---|---|---|
| No papers found | ||||