protein

TRIM28

Entity Detail — Knowledge Graph Node

Understanding Entity Pages

This page aggregates everything SciDEX knows about TRIM28: its mechanistic relationships (Knowledge Graph edges), hypotheses targeting it, analyses mentioning it, and supporting scientific papers. The interactive graph below shows its immediate neighbors. All content is AI-synthesized from peer-reviewed literature.

28Connections
0Hypotheses
0Analyses
15Outgoing
13Incoming

Summary

TRIM28 is a protein involved in neurodegeneration research. Key relationships include: activates, inhibits, implicated in. Associated with Cancer, Carcinoma, Tumor. Connected to 16 entities in the SciDEX knowledge graph.

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🔬 Protein Info
Gene SymbolTRIM28
Full NameTranscriptional Intermediary Factor 1 Beta (TIF1β)
AliasesTranscriptional Intermediary Factor 1 Beta
Protein FamilyTRIM family, transcriptional co-repressors
FunctionUpon KRAB-ZFP binding to DNA, TRIM28 is recruited through interaction with the KRAB domain.
Subcellular LocalizationNucleus (predominantly), also in cytoplasm
Molecular Weight110 kDa (835 amino acids)
Amino Acids835 aa
PathwaysFerroptosis
UniProt IDQ13263
GeneCardsTRIM28
Human Protein AtlasTRIM28
Protein NameTranscriptional Intermediary Factor 1 Beta (TIF1β)
GeneTRIM28
PDB Structures2JSS, 2L3V, 4DT3, 5YJC
Associated Diseasesneurodegeneration
InteractionsSLC7A11, STAT6, HDAC5, UBIQUITIN, FERROPTOSIS, CANCER
KG Connections28 knowledge graph edges
DatabasesGeneCardsNCBI GeneHPASTRING
🔮 Predicted Structure: TRIM28 — AlphaFold Q13263 Click to expand

AI-predicted structure from AlphaFold | Powered by Mol*

Wiki Pages (9)

Knowledge base pages for this entity

Canonical Page

TRIM28 (KAP1) Protein

protein · 1263 words

E3 Ubiquitin Ligase System in Neurodegeneration

mechanism · 2150 words

HDAC5 (Histone Deacetylase 5) Protein

protein · 1523 words

HDAC5 Gene

gene · 1336 words

ZNF7 - Zinc Finger Protein 7

gene · 1245 words

KDM5B (Lysine Demethylase 5B)

gene · 1122 words

Pathway Diagram

graph TD
    TRIM28["<b>TRIM28</b>"]
    Tumor{"Tumor"}
    TRIM28 -->|"activates"| Tumor
    Carcinoma{"Carcinoma"}
    TRIM28 -->|"activates"| Carcinoma
    Cancer{"Cancer"}
    TRIM28 -->|"activates"| Cancer
    SLC7A11["SLC7A11"]
    TRIM28 -->|"activates"| SLC7A11
    STAT6["STAT6"]
    TRIM28 -->|"activates"| STAT6
    HDAC5["HDAC5"]
    TRIM28 -->|"activates"| HDAC5
    Ferroptosis(["Ferroptosis"])
    TRIM28 -->|"activates"| Ferroptosis
    FERROPTOSIS["FERROPTOSIS"]
    TRIM28 -->|"activates"| FERROPTOSIS
    CANCER["CANCER"]
    TRIM28 -->|"activates"| CANCER
    TRIM28 -->|"inhibits"| HDAC5
    neurodegeneration["neurodegeneration"]
    TRIM28 -->|"implicated in"| neurodegeneration
    CANCER -->|"activates"| TRIM28
    FERROPTOSIS -->|"activates"| TRIM28
    SLC7A11 -->|"activates"| TRIM28
    STAT6 -->|"activates"| TRIM28
    AND["AND"]
    AND -->|"activates"| TRIM28
    HDAC5 -->|"activates"| TRIM28
    style TRIM28 fill:#1a3a4a,stroke:#4fc3f7,stroke-width:3px,color:#e0e0e0

Outgoing (15)

TargetRelationTypeStr
Tumoractivatesdisease0.65
Carcinomaactivatesdisease0.65
Canceractivatesdisease0.65
Alsinteracts_withdisease0.65
Cancerinteracts_withdisease0.65

Incoming (13)

SourceRelationTypeStr
HDAC5phosphorylatesentity0.60
SLC7A11activatesgene0.60
STAT6activatesgene0.60
HDAC5activatesgene0.60
RAD18interacts_withgene0.60

Targeting Hypotheses (0)

Hypotheses where this entity is a therapeutic target

HypothesisScoreDiseaseAnalysis
No targeting hypotheses

Mentioning Analyses (0)

Scientific analyses that reference this entity

No analyses mention this entity

Related Papers (0)

Scientific publications cited in analyses involving this entity

Title & PMIDAuthorsJournalYearCitations
No papers found