gene

HDAC5

Entity Detail — Knowledge Graph Node

Understanding Entity Pages

This page aggregates everything SciDEX knows about HDAC5: its mechanistic relationships (Knowledge Graph edges), hypotheses targeting it, analyses mentioning it, and supporting scientific papers. The interactive graph below shows its immediate neighbors. All content is AI-synthesized from peer-reviewed literature.

76Connections
0Hypotheses
0Analyses
50Outgoing
23Incoming

Summary

HDAC5 is a gene implicated in neurodegeneration research. Key relationships include: activates, regulates, inhibits. Associated with Als, Cancer, Carcinoma. Connected to 27 entities in the SciDEX knowledge graph.

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🧬 Gene Info
Gene SymbolHDAC5
Full NameHistone Deacetylase 5
Chromosome17q21.31
Protein FamilyClass IIa histone deacetylases
FunctionHistone deacetylation: HDAC5 deacetylates histone H3 and H4 tails, creating a chromatin environment that suppresses transcription
Primary Expressionthe brain, where it plays critical roles in synaptic plasticity, memory formation, stress responses, and n
Subcellular LocalizationNucleus (basal) and cytoplasm (signal-dependent)
Molecular Weight112 kDa
Amino Acids1122 aa
PathwaysNF-κB
UniProt IDQ9UQL6
NCBI Gene ID10014
Ensembl IDENSG00000108840
OMIM605315
GeneCardsHDAC5
Human Protein AtlasHDAC5
Associated DiseasesAlzheimer's disease, Parkinson's disease, Huntington's disease
InteractionsSTAT6, SLC7A11, TRIM28, HDAC7, TNF, HDAC9
KG Connections76 knowledge graph edges
DatabasesGeneCardsHPASTRING
🔮 Predicted Structure: HDAC5 — AlphaFold Q9UQL6 Click to expand

AI-predicted structure from AlphaFold | Powered by Mol*

Wiki Pages (21)

Knowledge base pages for this entity

Canonical Page

HDAC5 Gene

gene · 1336 words

Epigenetic Dysregulation in Neurodegeneration

mechanism · 4376 words

Epigenetic Dysregulation Comparison -- AD/PD/ALS/FTD/HD

mechanism · 4361 words

Histone Modification Pathways in Neurodegeneration

mechanism · 3367 words

TRIM2 Gene (Tripartite Motif Containing 2)

gene · 3093 words

MEF2B (Myocyte Enhancer Factor 2B)

gene · 2829 words

Pathway Diagram

graph TD
    HDAC5["<b>HDAC5</b>"]
    Cancer{"Cancer"}
    HDAC5 -->|"activates"| Cancer
    Carcinoma{"Carcinoma"}
    HDAC5 -->|"activates"| Carcinoma
    Tumor{"Tumor"}
    HDAC5 -->|"activates"| Tumor
    STAT6["STAT6"]
    HDAC5 -->|"regulates"| STAT6
    HDAC5 -->|"activates"| STAT6
    Ferroptosis(["Ferroptosis"])
    HDAC5 -->|"activates"| Ferroptosis
    SLC7A11["SLC7A11"]
    HDAC5 -->|"activates"| SLC7A11
    TRIM28["TRIM28"]
    HDAC5 -->|"activates"| TRIM28
    FERROPTOSIS["FERROPTOSIS"]
    HDAC5 -->|"activates"| FERROPTOSIS
    CANCER["CANCER"]
    HDAC5 -->|"activates"| CANCER
    neurodegeneration["neurodegeneration"]
    HDAC5 -->|"implicated in"| neurodegeneration
    SIK1["SIK1"]
    SIK1 -->|"activates"| HDAC5
    SLC7A11 -->|"activates"| HDAC5
    CANCER -->|"activates"| HDAC5
    FERROPTOSIS -->|"activates"| HDAC5
    TRIM28 -->|"activates"| HDAC5
    STAT6 -->|"activates"| HDAC5
    AND["AND"]
    AND -->|"activates"| HDAC5
    TRIM28 -->|"inhibits"| HDAC5
    style HDAC5 fill:#1a3a4a,stroke:#4fc3f7,stroke-width:3px,color:#e0e0e0

Outgoing (53)

TargetRelationTypeStr
STAT6associated_withgene0.90
Tumor Progressioninvolved_inprocess0.90
tumor progressiondrivesprocess0.85
epigenetic regulationparticipates_inpathway0.70
Canceractivatesdisease0.65

Incoming (23)

SourceRelationTypeStr
SIK1phosphorylatesgene0.95
SIK1activatesprotein0.72
SLC7A11activatesgene0.60
TRIM28activatesgene0.60
STAT6activatesgene0.60

Targeting Hypotheses (0)

Hypotheses where this entity is a therapeutic target

HypothesisScoreDiseaseAnalysis
No targeting hypotheses

Mentioning Analyses (0)

Scientific analyses that reference this entity

No analyses mention this entity

Related Papers (0)

Scientific publications cited in analyses involving this entity

Title & PMIDAuthorsJournalYearCitations
No papers found