Entity Detail — Knowledge Graph Node
This page aggregates everything SciDEX knows about HDAC5: its mechanistic relationships (Knowledge Graph edges), hypotheses targeting it, analyses mentioning it, and supporting scientific papers. The interactive graph below shows its immediate neighbors. All content is AI-synthesized from peer-reviewed literature.
HDAC5 is a gene implicated in neurodegeneration research. Key relationships include: activates, regulates, inhibits. Associated with Als, Cancer, Carcinoma. Connected to 27 entities in the SciDEX knowledge graph.
| Gene Symbol | HDAC5 |
| Full Name | Histone Deacetylase 5 |
| Chromosome | 17q21.31 |
| Protein Family | Class IIa histone deacetylases |
| Function | Histone deacetylation: HDAC5 deacetylates histone H3 and H4 tails, creating a chromatin environment that suppresses transcription |
| Primary Expression | the brain, where it plays critical roles in synaptic plasticity, memory formation, stress responses, and n |
| Subcellular Localization | Nucleus (basal) and cytoplasm (signal-dependent) |
| Molecular Weight | 112 kDa |
| Amino Acids | 1122 aa |
| Pathways | NF-κB |
| UniProt ID | Q9UQL6 |
| NCBI Gene ID | 10014 |
| Ensembl ID | ENSG00000108840 |
| OMIM | 605315 |
| GeneCards | HDAC5 |
| Human Protein Atlas | HDAC5 |
| Associated Diseases | Alzheimer's disease, Parkinson's disease, Huntington's disease |
| Interactions | STAT6, SLC7A11, TRIM28, HDAC7, TNF, HDAC9 |
| KG Connections | 76 knowledge graph edges |
| Databases | GeneCardsHPASTRING |
Knowledge base pages for this entity
graph TD
HDAC5["<b>HDAC5</b>"]
Cancer{"Cancer"}
HDAC5 -->|"activates"| Cancer
Carcinoma{"Carcinoma"}
HDAC5 -->|"activates"| Carcinoma
Tumor{"Tumor"}
HDAC5 -->|"activates"| Tumor
STAT6["STAT6"]
HDAC5 -->|"regulates"| STAT6
HDAC5 -->|"activates"| STAT6
Ferroptosis(["Ferroptosis"])
HDAC5 -->|"activates"| Ferroptosis
SLC7A11["SLC7A11"]
HDAC5 -->|"activates"| SLC7A11
TRIM28["TRIM28"]
HDAC5 -->|"activates"| TRIM28
FERROPTOSIS["FERROPTOSIS"]
HDAC5 -->|"activates"| FERROPTOSIS
CANCER["CANCER"]
HDAC5 -->|"activates"| CANCER
neurodegeneration["neurodegeneration"]
HDAC5 -->|"implicated in"| neurodegeneration
SIK1["SIK1"]
SIK1 -->|"activates"| HDAC5
SLC7A11 -->|"activates"| HDAC5
CANCER -->|"activates"| HDAC5
FERROPTOSIS -->|"activates"| HDAC5
TRIM28 -->|"activates"| HDAC5
STAT6 -->|"activates"| HDAC5
AND["AND"]
AND -->|"activates"| HDAC5
TRIM28 -->|"inhibits"| HDAC5
style HDAC5 fill:#1a3a4a,stroke:#4fc3f7,stroke-width:3px,color:#e0e0e0| Target | Relation | Type | Str |
|---|---|---|---|
| STAT6 | associated_with | gene | 0.90 |
| Tumor Progression | involved_in | process | 0.90 |
| tumor progression | drives | process | 0.85 |
| epigenetic regulation | participates_in | pathway | 0.70 |
| Cancer | activates | disease | 0.65 |
| Carcinoma | activates | disease | 0.65 |
| Tumor | activates | disease | 0.65 |
| Als | activates | disease | 0.65 |
| ALS | expressed_in | disease | 0.65 |
| STAT6 | regulates | protein | 0.64 |
| STAT6 | activates | gene | 0.60 |
| SLC7A11 | activates | gene | 0.60 |
| TRIM28 | activates | gene | 0.60 |
| TRIM28 | phosphorylates | entity | 0.60 |
| SLC7A11 | regulates | entity | 0.60 |
| ferroptosis | participates_in | pathway | 0.60 |
| HDAC7 | interacts_with | gene | 0.60 |
| TNF | activates | gene | 0.60 |
| HDAC9 | associated_with | gene | 0.60 |
| HDAC9 | inhibits | gene | 0.60 |
| HDAC9 | activates | gene | 0.60 |
| NRF2 | activates | gene | 0.60 |
| LIF | activates | gene | 0.60 |
| Ferroptosis | activates | pathway | 0.60 |
| FERROPTOSIS | activates | gene | 0.60 |
| CANCER | activates | gene | 0.60 |
| Epithelial-Mesenchymal Transition | activates | pathway | 0.60 |
| Pi3K/Akt | regulates | pathway | 0.60 |
| Tgf-Β | inhibits | pathway | 0.60 |
| Akt | inhibits | pathway | 0.60 |
| Pi3K | regulates | pathway | 0.60 |
| SIK1 | activates | gene | 0.60 |
| AND | activates | gene | 0.60 |
| Raf | activates | protein | 0.60 |
| SIK1 | targets | gene | 0.60 |
| SIK1 | associated_with | gene | 0.60 |
| Epigenetic | activates | pathway | 0.60 |
| oxidative stress response | participates_in | pathway | 0.60 |
| WTAP | activates | gene | 0.60 |
| YTHDF2 | activates | gene | 0.60 |
| TGF-beta signaling | participates_in | pathway | 0.60 |
| neurons | expressed_in | cell_type | 0.60 |
| Stem Cell | expressed_in | cell_type | 0.55 |
| SLC7A1 | co_discussed | gene | 0.50 |
| STING | co_discussed | gene | 0.50 |
| TRIM2 | co_discussed | gene | 0.50 |
| cancer | activates | disease | 0.50 |
| ferroptosis | activates | phenotype | 0.50 |
| HDAC9 | co_expressed_with | gene | 0.50 |
| NRF2 | co_expressed_with | gene | 0.50 |
| Source | Relation | Type | Str |
|---|---|---|---|
| SIK1 | phosphorylates | gene | 0.95 |
| SIK1 | activates | protein | 0.72 |
| SLC7A11 | activates | gene | 0.60 |
| TRIM28 | activates | gene | 0.60 |
| STAT6 | activates | gene | 0.60 |
| PTEN | regulates | gene | 0.60 |
| HK2 | inhibits | gene | 0.60 |
| PI3K | regulates | gene | 0.60 |
| AKT | inhibits | gene | 0.60 |
| HDAC11 | interacts_with | gene | 0.60 |
| HDAC3 | interacts_with | gene | 0.60 |
| LIF | expressed_in | gene | 0.60 |
| BIN1 | interacts_with | gene | 0.60 |
| BIN1 | expressed_in | gene | 0.60 |
| BIN1 | associated_with | gene | 0.60 |
| BMP2 | activates | gene | 0.60 |
| CANCER | activates | gene | 0.60 |
| FERROPTOSIS | activates | gene | 0.60 |
| METTL3 | activates | gene | 0.60 |
| AND | inhibits | gene | 0.60 |
| HDAC | inhibits | gene | 0.60 |
| HDAC | activates | gene | 0.60 |
| TRIM28 | inhibits | protein | 0.56 |
Hypotheses where this entity is a therapeutic target
| Hypothesis | Score | Disease | Analysis |
|---|---|---|---|
| No targeting hypotheses | |||
Scientific analyses that reference this entity
No analyses mention this entity
Scientific publications cited in analyses involving this entity
| Title & PMID | Authors | Journal | Year | Citations |
|---|---|---|---|---|
| No papers found | ||||