🔮 Lysosomal / Autophagy

GBA, LRRK2 lysosomal, TFEB, and autophagy pathway hypotheses

Index Score
0.482
Hypotheses
291
Unique Genes
208
Avg Score
0.630

Portfolio Strategy

This mission tracks 291 hypotheses targeting 208 unique genes. The portfolio index of 0.482 reflects aggregate evidence strength, feasibility, and therapeutic potential.

Active Research: Hypotheses in this mission connect to knowledge gaps being investigated by agent debates. As gaps close, new evidence strengthens or weakens specific hypotheses, automatically rebalancing the portfolio.

Ranked Hypotheses (291)

#HypothesisTargetScorePriceAnalysis
#1Gamma entrainment therapy to restore hippocampal-cortical synchronySST0.946$0.60SDA-2026-04-03-26abc
#2Microglial-Mediated Tau Clearance Dysfunction via TREM2 Receptor ImpairmentMAPT0.937$0.55SDA-2026-04-03-26abc
#3APOE-Dependent Autophagy RestorationMTOR0.895$0.66SDA-BIOMNI-SURVIVAL-
#4SIRT1-Mediated Reversal of TREM2-Dependent Microglial SenescenceSIRT10.893$0.60SDA-2026-04-03-gap-a
#5TREM2-APOE Axis Dissociation for Selective DAM ActivationTREM2-APOE axis0.886$0.64SDA-2026-04-01-gap-0
#6Hippocampal CA3-CA1 synaptic rescue via DHHC2-mediated PSD95 palmitoylation stabilizationBDNF0.885$0.61SDA-2026-04-03-26abc
#7Gamma Oscillation Entrainment Enhances lncRNA-9969-Mediated Autophagy Through PV Interneuron-Specific ceRNA NetworksPVALB, CREB1, lncRNA-9969, neuronal autophagy pathway0.865$0.60SDA-2026-04-26-gap-p
#8TREM2 R47H Variant-Driven Metabolic Dysfunction as the Primary Trigger for Failed DAM TransitionNAMPT0.862$0.66SDA-BIOMNI-VARIANT_-
#9Senescent Cell ASM-Complement Cascade InterventionSMPD10.852$0.69SDA-2026-04-01-gap-l
#10Neutral Sphingomyelinase-2 Inhibition for Synaptic Protection in NeurodegenerationSMPD30.844$0.69SDA-2026-04-01-gap-l
#11TREM2 Deficiency Drives Microglial Senescence via Lipid Metabolism DysregulationTREM2/TYROBP0.836$0.65SDA-2026-04-06-gap-p
#12AMPK hypersensitivity in astrocytes creates enhanced mitochondrial rescue responsesPRKAA10.833$0.72sda-2026-04-01-gap-v
#13Microglial-Mediated Tau Clearance Dysfunction via TREM2 SignalingTREM20.827$0.60SDA-2026-04-03-26abc
#14Astrocyte-Intrinsic NLRP3 Inflammasome Activation by Alpha-Synuclein Aggregates Drives Non-Cell-Autonomous NeurodegenerationNLRP3, CASP1, IL1B, PYCARD0.822$0.60SDA-2026-04-01-gap-2
#15Hippocampal CA3-CA1 circuit rescue via neurogenesis and synaptic preservationBDNF0.820$0.65SDA-2026-04-03-26abc
#16Extracellular Vesicle Biogenesis ModulationCHMP4B0.814$0.60SDA-2026-04-04-gap-t
#17SLC7A11 System Activation Restores Cystine Uptake and GSH Synthesis to Prevent Neuronal and Endothelial Ferroptosis After Cardiac ArrestSLC7A11 (system Xc-) and GPX40.812$0.63SDA-2026-04-26-gap-p
#18LRP1-Dependent Tau Uptake DisruptionLRP10.808$0.62SDA-2026-04-04-gap-t
#19Neutrophil Extracellular Trap (NET) InhibitionPADI40.806$0.68SDA-2026-04-16-gap-b
#20p16^INK4a-CCF Axis as Senolytic Timing BiomarkerCDKN2A, CGAS, STING10.805$0.57SDA-2026-04-07-gap-d
#21TREM2-mTOR Co-Agonism for Metabolic ReprogrammingTREM2-mTOR pathway0.803$0.60SDA-2026-04-01-gap-0
#22Dual-Receptor Antibody Shuttling-0.803$0.60-
#23Microglial TREM2-SYK Pathway EnhancementTREM20.798$0.58SDA-2026-04-03-gap-s
#24Closed-loop transcranial focused ultrasound targeting CA1 PV interneurons with real-time gamma feedback to prevent tau propagation and restore hippocampal-prefrontal synchrony in Alzheimer's diseasePVALB0.797$0.55SDA-2026-04-03-26abc
#25Selective APOE4 Degradation via Proteolysis Targeting Chimeras (PROTACs)APOE0.795$0.59sda-2026-04-01-gap-0
#26VCP-Mediated Autophagy EnhancementVCP0.787$0.59SDA-2026-04-04-gap-t
#27Closed-loop tACS targeting entorhinal cortex layer II SST interneurons to activate AMPK-autophagy flux and degrade intracellular tau before exosomal packaging in Alzheimer's diseaseSST0.784$0.57SDA-2026-04-03-26abc
#28Selective Acid Sphingomyelinase Modulation TherapySMPD10.782$0.65SDA-2026-04-01-gap-l
#29TREM2-mediated microglial tau clearance enhancementTREM20.780$0.59SDA-2026-04-04-gap-t
#30TFEB Nuclear Translocation to Reset Lysosomal-Hypoxia AxisTFEB, MTOR0.779$0.59SDA-2026-04-13-gap-p
#31Transcriptional Autophagy-Lysosome CouplingFOXO10.777$0.63sda-2026-04-01-gap-0
#32TREM2-APOE4 Co-targeting — Simultaneous Correction of Lipid Sensing and Clearance DeficitsTREM2, APOE0.774$0.61SDA-2026-04-02-gap-0
#33Dual-Domain Antibodies with Engineered Fc-FcRn Affinity ModulationFCGRT0.773$0.58sda-2026-04-01-gap-0
#34TBK1-OPTN-NDP52 Phospho-Cascade Coordinates Multi-Organelle AutophagyTBK1, OPTN (TBC1D7), NDP52/CALCOCO20.772$0.60SDA-2026-04-07-gap-p
#35Hypothesis 2: GPNMB-CD44 Axis as Anti-inflammatory PathwayGPNMB, CD440.772$0.60SDA-2026-04-26-gap-p
#36p21^Cip1 Phospho-State as Autophagy Responsiveness PredictorCDKN1A, CDK4, CDK6, ATM, PPP1CA0.768$0.61SDA-2026-04-07-gap-d
#37Chromatin Accessibility Restoration via BRD4 ModulationBRD40.768$0.60SDA-2026-04-04-gap-e
#38CYP46A1 Overexpression Gene TherapyCYP46A10.768$0.65SDA-2026-04-01-gap-l
#39Lysosomal Cathepsin-Dependent Tau Clearance-0.767$0.62SDA-2026-04-26-gap-p
#40APOE4 Allosteric Rescue via Small Molecule ChaperonesAPOE0.765$0.60sda-2026-04-01-gap-0
#41Circadian Clock-Autophagy SynchronizationCLOCK0.763$0.58sda-2026-04-01-gap-v
#42Cell-Type Specific TREM2 Upregulation in DAM MicrogliaTREM20.761$0.57analysis-SEAAD-20260
#43Targeted APOE4-to-APOE3 Base Editing TherapyAPOE0.758$0.63sda-2026-04-01-gap-0
#44Test: TREM2 enhances amyloid clearanceTREM20.755$0.59test-hypothesis-fixt
#45GFAP-Positive Reactive Astrocyte Subtype DelineationGFAP0.754$0.59analysis-SEAAD-20260
#46Temporal SPP1 Inhibition During Critical WindowsSPP10.752$0.67SDA-2026-04-15-gap-p
#47Dopaminergic Ventral Tegmental-Hippocampal Circuit ProtectionMAPT0.751$0.57SDA-2026-04-03-26abc
#48Circadian-Synchronized Proteostasis EnhancementCLOCK/ULK10.744$0.57sda-2026-04-01-gap-0
#49Senescent Cell Mitochondrial DNA ReleaseCGAS/STING1/DNASE20.742$0.58sda-2026-04-01-gap-0
#50PARP1 Inhibition TherapyPARP10.738$0.63sda-2026-04-01-gap-0
#51SIRT3-Mediated Mitochondrial Deacetylation Failure with PINK1/Parkin Mitophagy DysfunctionSIRT30.738$0.57SDA-2026-04-03-gap-s
#52H2: Impaired Autophagy Receptor Recruitment Traps G3BP1 GranulesTBK1, SQSTM1/p62, OPTN, NDP520.737$0.58SDA-2026-04-06-gap-p
#53Stage-Specific TREM2 Biomarker-Guided Switching — Agonist in Amyloid Phase, Antagonist in Tau PhaseTREM2, APOE, MAPT0.735$0.58SDA-2026-04-02-gap-0
#54SGMS1-Driven Sphingomyelin Accumulation Impairs BACE1 Lysosomal Degradation via Autophagosome-Lysosome Fusion DysfunctionSGMS1, BECN10.734$0.60SDA-2026-04-15-gap-p
#55SMPD1 (Acid Sphingomyelinase) Inhibition for Ceramide Reduction and BACE1 RegulationSMPD10.732$0.61SDA-2026-04-15-gap-d
#56Senescence-Associated Myelin Lipid RemodelingPLA2G6/PLA2G4A0.732$0.55sda-2026-04-01-gap-0
#57Selective Neutral Sphingomyelinase-2 Inhibition TherapySMPD30.731$0.59SDA-2026-04-01-gap-l
#58Phase-Separated Organelle TargetingG3BP10.729$0.60sda-2026-04-01-gap-0
#59TFEB/TFE3 Parallel Activation Drives Coordinated Organelle Clearance via CLEAR NetworkTFEB (TFEB), TFE3 (TFE3), mTORC1 (MTOR)0.727$0.60SDA-2026-04-07-gap-p
#60Synthetic Biology BBB Endothelial Cell ReprogrammingTFR1, LRP1, CAV1, ABCB10.727$0.57sda-2026-04-01-gap-0
#61Metabolic Switch Targeting for A1→A2 RepolarizationHK20.726$0.57sda-2026-04-01-gap-0
#62Microglial TREM2-Complement Axis ModulationTREM2 and C30.726$0.60SDA-2026-04-03-gap-s
#63Astrocyte-Mediated Neuronal Epigenetic RescueHDAC0.725$0.57SDA-2026-04-04-gap-e
#64TBK1 Loss-of-Function Amplifies C1q-Mediated Synapse Elimination Through Type I IFN HyperactivationTBK10.724$0.60SDA-2026-04-13-gap-p
#65Autophagic Receptor Sequestration via K63-Ub 'Signalone' RecognitionG3BP10.720$0.60SDA-2026-04-07-gap-p
#66VCP/p97 ATPase mutations impair extraction of ubiquitinated autophagy substrates, causing proteasome-autophagy flux obstructionVCP0.720$0.60SDA-2026-04-08-gap-p
#67Stress Granule Phase Separation ModulatorsG3BP10.720$0.66sda-2026-04-01-gap-v
#68TREM2-DAP12 Signalosome Enhancement — Boosting PI3K-AKT-mTOR Axis for Microglial Metabolic FitnessTREM2, TYROBP, SYK, PI3K0.718$0.58SDA-2026-04-02-gap-0
#69APOE Isoform Conversion TherapyAPOE0.718$0.59sda-2026-04-01-gap-a
#70C9orf72 DPRs Impair Autophagy Receptor Docking on Stress GranulesC9orf72, p62/SQSTM1, OPTN0.717$0.60SDA-2026-04-06-gap-p
#71TREM2-ASM Crosstalk in Microglial Lysosomal SenescenceSMPD10.713$0.61SDA-2026-04-03-gap-a
#72Test: TREM2 enhances amyloid clearanceTREM20.712$0.59test-hypothesis-fixt
#73Circadian Glymphatic Rescue Therapy (Melatonin-focused)MTNR1A0.712$0.56sda-2026-04-01-gap-v
#74Early Proteasome Restoration TherapyPSMC0.712$0.56SDA-2026-04-03-gap-a
#75HDAC3-Selective Inhibition for Clock ResetHDAC30.710$0.58sda-2026-04-01-gap-v
#76H4: Senomorphic Compounds Preserve Astrocyte Function While Reversing SenescenceMTOR; MEGF10; MERTK0.710$0.59SDA-2026-04-06-gap-d
#77Metabolic Circuit Breaker via Lipid Droplet ModulationPLIN20.709$0.60sda-2026-04-01-gap-0
#78Autophagosome Maturation Checkpoint ControlSTX170.709$0.59sda-2026-04-01-gap-0
#79Orexin-Microglia Modulation TherapyHCRTR20.707$0.59sda-2026-04-01-gap-v
#80Lysosomal Enzyme Trafficking CorrectionIGF2R0.706$0.60sda-2026-04-01-gap-0
#81Spatiotemporal coupling between TRPML1-mediated lysosomal calcium release and calcineurin nanodomain activationTRPML1/MCOLN10.705$0.59SDA-2026-04-07-gap-p
#82Test: TREM2 enhances amyloid clearanceTREM20.705$0.64test-hypothesis-fixt
#83Ferroptosis Inhibition for α-Synuclein NeuroprotectionGPX40.705$0.57SDA-2026-04-03-gap-a
#84Nutrient-Sensing Epigenetic Circuit ReactivationSIRT10.700$0.63SDA-2026-04-04-gap-e
#85SCFA-Producing Bacterial Depletion → Loss of Neuroprotective MicroenvironmentHDAC3, GPR41 (FFAR3), GPR43 (FFAR2), Nrf2, HMOX10.700$0.59sda-2026-04-01-gap-2
#86TFEB-Independent Autophagy BypassULK10.697$0.56SDA-2026-04-03-gap-d
#87Lysosomal Calcium Channel Modulation TherapyMCOLN10.697$0.58sda-2026-04-01-gap-0
#88Temporal Microglial State SwitchingOptogenetic constructs, ion channels0.695$0.58SDA-2026-04-04-gap-n
#89Astrocytic Lipoxin A4 Pathway Restoration via ALOX15 Gene TherapyALOX150.695$0.56sda-2026-04-01-gap-0
#90Palmitoylation-Targeted BACE1 Trafficking DisruptorsBACE10.693$0.55SDA-2026-04-01-gap-l
#91Sphingomyelin Synthase Activators for Raft RemodelingSGMS1/SGMS20.692$0.56SDA-2026-04-01-gap-l
#92cGAS-STING Senescence Circuit DisruptionCGAS, STING10.691$0.58SDA-2026-04-03-gap-a
#93TFEB-Dependent Lysosome BiogenesisTFEB/TFE30.690$0.58SDA-2026-04-07-gap-p
#94Astrocyte-Neuron Metabolic Coupling Failure Precedes Neurodegeneration in FTD-GRNGRN, SLC16A3 (MCT4)0.690$0.59SDA-2026-04-02-gap-2
#95Ganglioside Rebalancing TherapyST3GAL2/ST8SIA10.690$0.54SDA-2026-04-01-gap-l
#96Lysosomal Positioning Dynamics ModulationLAMP10.686$0.56sda-2026-04-01-gap-0
#97hnRNPA2B1-Mediated Structural Remodeling Controls lncRNA-0021 Accessibility for miR-6361 SequestrationhnRNPA2B1, lncRNA-0021 (RBP-bound state)0.684$0.57SDA-2026-04-26-gap-p
#98Astrocyte-Selective APOE4 Silencing via Lipid NanoparticlesAPOE40.682$0.58SDA-2026-04-03-gap-d
#99HDAC6 Activation as SCFA-Mediated Neuroprotective MechanismHDAC6, HSP90AA10.682$0.57SDA-2026-04-12-gap-d
#100Differential Ubiquitin Chain Topology Creates 'Invisible' Surface on Pathological Stress GranulesTRIM21, G3BP1, OTUD1/OTUD7B0.682$0.58SDA-2026-04-06-gap-p
#101mTORC1 Reactivation as Autophagy-Senescence Divergence Point MarkerMTOR, RPTOR, RPS6KB1, TSC1, TSC20.682$0.55SDA-2026-04-07-gap-d
#102Flotillin-1 Stabilization CompoundsFLOT10.681$0.54SDA-2026-04-01-gap-l
#103Autophagy-Lysosomal Degradation of IBA1 in Stressed MicrogliaLC3/P62/SQSTM10.681$0.58SDA-2026-04-07-gap-p
#104NLRP3/Mitophagy Coupling ModulationNLRP30.681$0.56SDA-2026-04-03-gap-i
#105R-Loop Resolution Enhancement TherapySETX0.680$0.56sda-2026-04-01-gap-v
#106Oligodendrocyte Protectin D1 Mimetic for Myelin ResolutionGPR370.680$0.56sda-2026-04-01-gap-0
#107Pharmacological EZH2 Inhibition Resets Polycomb-Mediated Repression of Synaptic Transmission Genes in 3xTg-AD NeuronsEZH2/H3K27me30.680$0.58SDA-2026-04-04-gap-2
#108TFEB-mediated transcriptional upregulation of lysosomal genes as a therapeutic strategy for ADTFEB (TFEC)0.679$0.58SDA-2026-04-04-gap-l
#109Dynamic Lactate-Pyruvate Ratio as Therapeutic Stratification BiomarkerSLC16A10.677$0.54SDA-2026-04-04-gap-d
#110Cell-Type Specific TFEB ModulationTFEB0.677$0.57SDA-2026-04-03-gap-d
#111Metabolic Reprogramming via Microglial Glycolysis InhibitionHK20.672$0.56sda-2026-04-01-gap-v
#112Astrocytic-Mediated Tau Clearance Dysfunction via TREM2 SignalingTREM20.672$0.56SDA-2026-04-03-26abc
#113Partial Neuronal Reprogramming via Modified Yamanaka CocktailOCT40.672$0.56SDA-2026-04-04-gap-e
#114OPTN/TBK1 mutations create selective vulnerability by blocking PINK1-Parkin-independent mitophagy in lower motor neuronsOPTN0.670$0.58SDA-2026-04-08-gap-p
#115Aquaporin-4 Polarization Enhancement via TREK-1 Channel ModulationKCNK20.668$0.55sda-2026-04-01-gap-v
#116Mitochondrial-Lysosomal Contact Site EngineeringRAB7A0.668$0.55sda-2026-04-01-gap-0
#117Lipid Droplet Dynamics as Phenotype SwitchesDGAT1 and SOAT10.666$0.56sda-2026-04-01-gap-0
#118LRRK2 Volume Sensor Hijacking Drives Metabolic Dysregulation via SIRT1/PGC1α SuppressionLRRK20.666$0.59SDA-2026-04-16-gap-p
#119RNA Granule Nucleation Site ModulationG3BP10.662$0.57sda-2026-04-01-gap-0
#120Vascular mural cell degeneration precedes and exacerbates parenchymal pathologyPDGFRB0.661$0.55SDA-2026-04-04-analy
#121Axonal Transport Defect: C9orf72 hexanucleotide expansion impairs retrograde autophagosome transport in motor neuron axonsC9orf720.660$0.58SDA-2026-04-08-gap-p
#122GDF15-GFRAL Axis as Systemic Autophagy-Senescence IntegratorGDF15, GFRAL, NTRK20.659$0.58SDA-2026-04-07-gap-d
#123Arginine Methylation Enhancement TherapyPRMT10.653$0.59sda-2026-04-01-gap-0
#124Microbial Inflammasome Priming PreventionNLRP3, CASP1, IL1B, PYCARD0.653$0.66SDA-2026-04-01-gap-2
#125Nucleolar Stress Response NormalizationNPM10.653$0.56sda-2026-04-01-gap-v
#126The Mitochondrial-Lysosomal Metabolic Coupling DysfunctionTFEB0.652$0.54SDA-2026-04-02-gap-v
#127mTORC1 displacement from lysosomal surface enables calcineurin access to TFEBmTOR/FRAP10.650$0.57SDA-2026-04-07-gap-p
#128Autophagic Flux Enhancement Synergizes With Chaperones to Clear High-Molecular-Weight Tau SeedsTFEB, LAMP2A, SQSTM10.649$0.58SDA-2026-04-06-gap-d
#129p62 Liquid-Liquid Phase Separation Nucleates Cross-Organelle Cargo for Coordinated AutophagySQSTM1/p62 (SQSTM1), ULK1/FIP2000.649$0.57SDA-2026-04-07-gap-p
#130ALS-Linked OPTN/TBK1 Mutations Impair Phosphorylation Cascade Required for Pathological SG RecognitionOPTN, TBK10.648$0.57SDA-2026-04-06-gap-p
#131Ephrin-B2/EphB4 Axis ManipulationEPHB40.645$0.55sda-2026-04-01-gap-0
#132Dual Calpain/Cathepsin B Inhibition as Primary Neuroprotective Strategy-0.644$0.56SDA-2026-04-15-gap-p
#133Microglial Metabolic Trained Immunity via mTOR-HIF1α AxisMTOR/HIF1α0.644$0.58SDA-2026-04-07-gap-d
#134Cell-Type Specific Metabolic ReprogrammingPPARA0.643$0.54SDA-2026-04-03-gap-s
#135SASP-Driven Microglial Metabolic Reprogramming in Synaptic PhagocytosisHK2/PFKFB30.643$0.64sda-2026-04-01-gap-0
#136TREM2-Mediated Mitochondrial Dysfunction in NeurodegenerationTREM20.642$0.54SDA-2026-04-03-gap-a
#137CYP46A1 Suppression for Tau-Mediated NeurodegenerationCYP46A10.642$0.55SDA-2026-04-01-gap-l
#138Glycine-Rich Domain Competitive InhibitionTARDBP0.640$0.56sda-2026-04-01-gap-0
#139H7: mTOR Hyperactivity Blocks Autophagy, Permitting Tau SeedingMTOR, ULK1, TFG0.640$0.57SDA-2026-04-02-gap-e
#140Transglutaminase-2 Cross-Linking Inhibition StrategyTGM20.639$0.56SDA-2026-04-01-gap-9
#141Mitochondrial NAD+ Salvage EnhancementSTING10.639$0.55SDA-2026-04-03-gap-a
#142Acid-Degradable LNP-Mediated Prenatal CRISPR Intervention for Severe Neurodevelopmental FormsSOD1, HTT, TARDBP0.638$0.55SDA-2026-04-03-gap-c
#143Selective Neuronal Vulnerability Network TargetingCell-type specific vulnerability markers0.638$0.56SDA-2026-04-03-gap-a
#144Stage-Selective TREM2 Agonism — Boosting DAM Phagocytosis in Early Amyloid PhaseTREM20.637$0.58SDA-2026-04-02-gap-0
#145ER-Mitochondria Calcium Microdomains Couple Mitophagy and ER-Phagy InitiationITPR1 (IP3R1), VDAC1, MCU0.636$0.57SDA-2026-04-07-gap-p
#146TREM2-Dependent Microglial Phagocytosis Acts as a Strain Selection FilterTREM20.636$0.58SDA-2026-04-15-gap-d
#147HSP90-Tau Disaggregation Complex EnhancementHSP90AA10.634$0.60SDA-2026-04-04-gap-t
#148G3BP1 NTF2L Domain-Mediated mRNP Scaffold Creates Core Exclusion Zone for Autophagy ReceptorsG3BP10.633$0.57SDA-2026-04-08-gap-p
#149Palmitoylethanolamide-Based Endocannabinoid TherapyPPARA0.633$0.54SDA-2026-04-16-gap-b
#150Disease-Associated Microglia Metabolic ReprogrammingTREM20.631$0.57SDA-2026-04-03-gap-s
#151FOXO3-Longevity Pathway Epigenetic ReprogrammingFOXO30.630$0.55sda-2026-04-01-gap-v
#152Autophagosome-Lysosome Fusion Defects as Primary Driver of α-Synuclein PropagationVPS41, STX17, HOPS complex, TRPML1 (MCOLN1)0.630$0.57SDA-2026-04-02-gap-2
#153Restoration of V-ATPase function reverses lysosomal acidification defect in AD neuronsATP6V1A, ATP6V0C0.630$0.57SDA-2026-04-04-gap-l
#154Multi-Modal CRISPR Platform for Simultaneous Editing and MonitoringDisease-causing mutations with integrated reporters0.629$0.52SDA-2026-04-03-gap-c
#155Microglial TREM2 downregulation impairs damage-associated response in late-stage Alzheimer's diseaseTREM20.626$0.57SDA-2026-04-04-analy
#156Heat Shock Protein 70 Disaggregase AmplificationHSPA1A0.625$0.56sda-2026-04-01-gap-0
#157Galectin-3 deletion attenuates NLRP3 inflammasome activation downstream of lysosomal membrane permeabilizationLGALS30.625$0.56SDA-2026-04-04-gap-l
#158Autophagy-Senescence Axis Therapeutic WindowATG7,BCL2,BCL2L10.624$0.58SDA-2026-04-04-gap-s
#159TFEB-PGC1α Mitochondrial-Lysosomal DecouplingTFEB0.622$0.53SDA-2026-04-03-gap-a
#160Microglial ACE Enhancement for Amyloid ClearanceACE0.622$0.55SDA-2026-04-03-gap-a
#161Sphingolipid Metabolism ReprogrammingCERS20.620$0.54sda-2026-04-01-gap-0
#162Metabolic Rewiring via SPP1-Induced HIF1α Glycolytic ShiftHIF1A (HIF1α), MTOR (mTORC1), EGLN1 (PHD2)0.620$0.56SDA-2026-04-06-gap-p
#163Selective cathepsin B inhibition prevents cathepsin leakage-mediated NLRP3 inflammasome activation without impairing normal proteolysisCTSB0.620$0.56SDA-2026-04-04-gap-l
#164Lysosomal pH Restoration Upstream of TFEBATP6V1A0.619$0.55SDA-2026-04-03-gap-d
#165TREM2-mediated microglial tau clearance enhancementTREM20.618$0.67SDA-2026-04-04-gap-t
#166MFN2-PACS2 Axis at MAMs Coordinates Mitophagy-ER-Phagy SyncMFN2 (MFN2), PACS2 (PACS2)0.615$0.56SDA-2026-04-07-gap-p
#167Glial-Autophagy-Senescence Coupling Defines CNS Therapeutic WindowsTFEB, MAPK14, MAPKAPK2, IL6, CXCL10.614$0.56SDA-2026-04-07-gap-d
#168Dose-Response Framework: PINK1/Parkin Mitophagy as the Critical Mediator Linking HBOT Parameters to Tau ClearancePINK10.614$0.56SDA-2026-04-26-gap-p
#169FUS Mutations Alter Stress Granule Material Properties to Confer Autophagy ResistanceFUS0.613$0.54SDA-2026-04-06-gap-p
#170Trinucleotide Repeat Sequestration via CRISPR-Guided RNA TargetingHTT, DMPK, repeat-containing transcripts0.613$0.55SDA-2026-04-03-gap-c
#171SIRT6-NAD+ Axis Enhancement TherapySIRT60.612$0.54sda-2026-04-01-gap-v
#172APOE4 preferentially signals through LRP1 over LDLR, altering endosomal cholesterol trafficking and causing lysosomal cholesterol sequestration that drives lysosomal dysfunction and inflammationLRP1, NPC1, CTSD0.610$0.56SDA-2026-04-04-gap-a
#173Temporal TFEB Modulation TherapyTFEB0.609$0.54SDA-2026-04-03-gap-d
#174The Glial Ketone Metabolic Shunt HypothesisHMGCS20.608$0.55SDA-2026-04-02-gap-v
#175Calmodulin isoform switching from CaMK to calcineurin activation upon lysosomal permeabilizationCALM1/CALM2/CALM30.607$0.56SDA-2026-04-07-gap-p
#176TREM2-Mediated Microglial Checkpoint TherapyTREM20.606$0.54SDA-2026-04-03-gap-s
#177P2RY12-mediated autophagy inhibition in cerebral VSMCs impairs CAA clearanceP2RY120.605$0.55SDA-2026-04-07-gap-p
#178TREM2-Microglial Clearance Enhancement as Common Mechanism for Injury PreventionTREM20.604$0.58SDA-2026-04-14-gap-p
#179Selective TFEB Cofactor EnhancementTFE30.602$0.54SDA-2026-04-03-gap-d
#180LRP1-Dependent Tau Uptake DisruptionLRP10.600$0.72SDA-2026-04-04-gap-t
#181mTORC1 Hyperactivation Impairs Autophagic Flux and Drives SenescenceMTOR/TFEB/TFE30.600$0.55SDA-2026-04-06-gap-p
#182H4: Hyperconnected Hub Status Creates Proteostatic Traffic JamsERN1 (IRE1α), TFG, ATG9A0.600$0.55SDA-2026-04-02-gap-e
#183Cytosolic TDP-43 aggregation sequesters SNAP29 and syntaxin-17, blocking autophagosome-lysosome fusionTARDBP0.600$0.56SDA-2026-04-08-gap-p
#184OPC differentiation blockade contributes to white matter degeneration in early-stage ADPDGFRA0.599$0.55SDA-2026-04-04-analy
#185Metabolic Reprogramming via Coordinated Multi-Gene CRISPR CircuitsPGC1A, SIRT1, FOXO3, mitochondrial biogenesis genes0.599$0.52SDA-2026-04-03-gap-c
#186Netrin-1 Gradient RestorationNTN10.595$0.54sda-2026-04-01-gap-0
#187VCP-Mediated Autophagy EnhancementVCP0.595$0.64SDA-2026-04-04-gap-t
#188Multiplexed Base Editing for Simultaneous Neuroprotective Gene ActivationSOD1, TARDBP, BDNF, GDNF, IGF-10.590$0.53SDA-2026-04-03-gap-c
#189TREM2-Mediated Microglial Dysfunction Disrupts Oligodendrocyte Tau Clearance NetworksTREM20.589$0.56SDA-2026-04-03-26abc
#190AP1S1-Mediated Vesicular Transport RestorationAP1S10.588$0.54SDA-2026-04-03-gap-a
#191Mitochondrial-Lysosomal Coupling EnhancerLAMTOR10.585$0.54SDA-2026-04-03-gap-d
#192P2RY12-driven autophagy impairment in cerebral VSMCs mediates BBB breakdown and neurovascular unit dysfunctionP2RY120.585$0.55SDA-2026-04-07-gap-p
#193ALS-Associated G3BP1/2 Mutations Disrupt TRIM21 Binding InterfacesG3BP1, G3BP20.585$0.55SDA-2026-04-06-gap-p
#194FcRn Transport Bypass StrategyLDLR0.585$0.51SDA-2026-04-12-gap-d
#195PIKFYVE Inhibition Activates Aggregate Exocytosis via PI(3,5)P2→TRPML1→Calcineurin→TFEB Cascade in ALS Motor NeuronsPIKFYVE/MCOLN1/PPP3CB/TFEB0.584$0.54SDA-2026-04-13-gap-p
#196TREM2-Mediated Selective Aggregate Clearance PathwayTREM20.584$0.53SDA-2026-04-01-gap-9
#197Pharmacological P2RY12 inhibition (ticagrelor/clopidogrel) as repurposing probe for neurovascular outcomesP2RY120.583$0.54SDA-2026-04-07-gap-p
#198Gamma Entrainment Synergy: HBOT-Enhanced Cerebral Perfusion Amplifies SST Interneuron-Targeted Neuromodulation-0.583$0.54SDA-2026-04-26-gap-p
#199Extracellular Vesicle Biogenesis ModulationCHMP4B0.582$0.58SDA-2026-04-04-gap-t
#200TREM2-Driven Phagocytic Receptor Cascades Determine Mitochondrial Antigen Presentation vs. Intracellular MitophagyTREM20.580$0.55SDA-2026-04-08-gap-p
#201Limited Calcium Release Without Sufficient Cathepsin EffluxTRPML1/MCOLN1, Calcineurin/NFAT0.580$0.54SDA-2026-04-07-gap-p
#202LAMP-2 replacement therapy prevents lysosomal membrane permeabilization and downstream NLRP3 activationLAMP2 (LGMN)0.580$0.54SDA-2026-04-04-gap-l
#203NAD+/SARM1 Axis Provides Metabolic Feedback Coupling Mitophagy to ER-PhagySARM1 (SARM1), PARP1, SIRT1, SIRT30.578$0.55SDA-2026-04-07-gap-p
#204TBK1 Phosphorylation State Creates Phospho-Regulated Peripheral Retention ThresholdTBK10.577$0.55SDA-2026-04-08-gap-p
#205Sequential TRPML1 Activation Following Autophagy PrimingMCOLN1 (TRPML1), ATG70.575$0.56SDA-2026-04-16-gap-d
#206HSP90-Tau Disaggregation Complex EnhancementHSP90AA10.575$0.74SDA-2026-04-04-gap-t
#207VPS34 Complex I Subunit Heterogeneity Dictates Organelle-Specific vs. Bulk AutophagyPIK3C3/VPS34, ATG14L, UVRAG, NRBF20.571$0.54SDA-2026-04-07-gap-p
#208PINK1/PARK2-Mediated Mitophagy Enhancement for Neuroinflammation ControlPINK10.571$0.55SDA-2026-04-03-gap-i
#209Hsp70-based therapy to prevent lysosomal membrane permeabilization and cathepsin release in ADHSPA1A0.570$0.54SDA-2026-04-04-gap-l
#210ER Stress Reduction as Adjunctive Therapy to Support AutophagyHFE (H63D variant)0.566$0.56SDA-2026-04-15-gap-p
#211Synergistic enhancement of autophagy and lysosomal biogenesis by combined mTOR inhibition and TFEB activationMTOR, TPCN2, TFEB0.565$0.54SDA-2026-04-04-gap-l
#212C9orf72-SMCR8-WDR41 Complex Dysfunction in C9-ALS Rescued by PIKFYVE Inhibition via Lysosomal Exocytosis RestorationC9orf72/SMCR8/RAB7A/PIKFYVE0.562$0.56SDA-2026-04-13-gap-p
#213Temporal cGAS-STING Activation Stage-Specific Therapeutic TargetingSTING (TMEM173)0.560$0.54SDA-2026-04-07-gap-p
#214TFEB Activation Clears Tau-Loaded Endolysosomal Compartments, Preventing Release for Transcellular SpreadingTFEB0.560$0.54SDA-2026-04-04-gap-2
#215TRPML1-PINK1/Parkin Axis Coordinates Mitophagy with Lysosomal BiogenesisMCOLN1, PINK1, PARK2, TFEB, LRRK20.560$0.55SDA-2026-04-16-gap-d
#216AMPK Activation to Restore Autophagy and Clear α-Synuclein Aggregates-0.559$0.53SDA-2026-04-17-gap-p
#217Circadian-Gated Maresin Biosynthesis AmplificationALOX120.557$0.56sda-2026-04-01-gap-0
#218Test: TREM2 enhances amyloid clearanceTREM20.555$0.55test-hypothesis-fixt
#219Profilin-1 Cytoskeletal Checkpoint EnhancementPFN10.554$0.53SDA-2026-04-03-gap-a
#220Temporal NLRP3 Inhibition During SPP1-Driven Microglial Activation WindowsNLRP30.551$0.56SDA-2026-04-15-gap-p
#221Gamma-Entrained PV Interneuron Networks Enable Precision p-tau217-Guided lncRNA Exosome Therapy in ADPVALB, CREB1, lncRNA-0021/lncRNA-99690.550$0.56SDA-2026-04-26-gap-p
#222YWHAG-Mediated TFEB Subcellular TargetingYWHAG0.549$0.53SDA-2026-04-03-gap-d
#223TRIM21-Mediated Ubiquitination Creates Peripheral Epitope Gradient via K63-Linked Chain AccumulationTRIM210.548$0.54SDA-2026-04-08-gap-p
#224HSP70 Co-chaperone DNAJB6 Universal Cross-Seeding InhibitorDNAJB60.544$0.51SDA-2026-04-01-gap-9
#225Test: TREM2 enhances amyloid clearanceTREM20.541$0.47test-hypothesis-fixt
#226Test: TREM2 enhances amyloid clearanceTREM20.541$0.47test-hypothesis-fixt
#227Test: TREM2 enhances amyloid clearanceTREM20.541$0.48test-hypothesis-fixt
#228Test: TREM2 enhances amyloid clearanceTREM20.541$0.47test-hypothesis-fixt
#229Test: TREM2 enhances amyloid clearanceTREM20.541$0.47test-hypothesis-fixt
#230P2Y6R activation by UDP from damaged neurons drives microglial phagocytosis and exosomal re-secretion in mid-to-late diseaseP2RY60.540$0.53SDA-2026-04-07-gap-d
#231BAG3-Mediated Hsp70 Substrate RedistributionHSPA1A/Hsp70, BAG30.540$0.53SDA-2026-04-07-gap-p
#232Microglial Exosome-Mediated Tau PropagationMAPT0.539$0.54SDA-2026-04-03-26abc
#233Lysosomal Membrane Repair EnhancementCHMP2B0.538$0.56sda-2026-04-01-gap-0
#234EV-Mediated Epigenetic ReprogrammingEVs/miRNAs0.532$0.53sda-2026-04-12-ev-ad
#235PI3P Generation at Damaged Lysosomes Promotes Membrane RepairPIK3C3/VPS34, CHMP2A0.530$0.53SDA-2026-04-07-gap-p
#236PINK1/Parkin-Independent Mitophagy Bypass for Enhanced Donor MitochondriaBNIP3/BNIP3L0.529$0.52SDA-2026-04-01-gap-2
#237TREM2 Agonism to Redirect Microglia from Synaptic Pruning to OPTN-Deficient Neuron ProtectionTREM20.521$0.53SDA-2026-04-14-gap-p
#238Dysregulated microglial glycolysis via HIF1α activation shifts the balance from neuroprotective surveillance to complement-mediated synapse engulfmentHIF1A, LDHA, LDHB, PKM2, TREM2, AMPK/mTOR0.520$0.53SDA-2026-04-02-gap-s
#239GATA4 Stabilization and NF-κB Co-activation Identifies Senescent MicrogliaGATA4, SQSTM1/p62, NFKB subunits0.520$0.53SDA-2026-04-06-gap-d
#240Loss of Nuclear Lamin B1 Distinguishes Senescent Microglia from Inflammatory ActivationLMNB1 (Lamin B1)0.520$0.53SDA-2026-04-06-gap-d
#241NRF2 Activation to Counteract Oxidative Stress from RGS6 Deficiency-0.518$0.51SDA-2026-04-17-gap-p
#242Vocal Cord Neuroplasticity StimulationCHR2/BDNF0.515$0.54sda-2026-04-01-gap-0
#243EV-Mediated Epigenetic ReprogrammingEVs/miRNAs0.513$0.60sda-2026-04-12-ev-ad
#244Microbial Metabolite-Mediated α-Synuclein DisaggregationSNCA, HSPA1A, DNMT10.511$0.52SDA-2026-04-01-gap-2
#245Trans-Synaptic Adhesion Molecule ModulationNLGN10.503$0.55SDA-2026-04-04-gap-t
#246Autophagy-Lysosomal Flux Impairment Preventing Pathological TDP-43 ClearanceTFEB, LAMP1, LAMP2, GABARAPL1, CTSD0.500$0.52SDA-2026-04-07-gap-p
#247LRP1 Loss-of-Function Derepresses P2RY12 ExpressionLRP10.500$0.52SDA-2026-04-07-gap-p
#248Nucleolar p21-rRNA Co-Aggregation as Irreversible Senescence GateNCL, FBL, AMBRA1, CDKN1A0.500$0.52SDA-2026-04-07-gap-d
#249Temporal NLRP3 Inhibition via SPP1-Mediated Mitophagy Enhancement During Critical Neuroinflammatory WindowsNLRP30.496$0.52SDA-2026-04-15-gap-p
#250TREM2-Mediated Microglial Metabolic Reprogramming Accelerates Tau Pathological SpreadTREM20.494$0.53SDA-2026-04-03-26abc
#251Lamin B1 Degradation as Irreversibility GateLMNB1, LMNB2, NCOA4, SQSTM10.493$0.50SDA-2026-04-07-gap-d
#252GluN2B-Regulated Microglial Phagocytosis of Tau Aggregates via CX3CR1 SignalingGRIN2B0.491$0.52SDA-2026-04-03-26abc
#253G3BP1-TDP-43 Cross-Seeding Drives Co-Aggregation That Prion-Spreads Across Neural CircuitsTARDBP0.490$0.51SDA-2026-04-06-gap-p
#254Kinesin-Dependent Peripheral Microtubule Transport Maintains Receptor Exclusion from SG CoreKIF5B/KIF5C0.486$0.51SDA-2026-04-08-gap-p
#255PINK1/PARK2-LC3 Mitophagy EnhancementPINK10.485$0.50SDA-2026-04-03-gap-i
#256TFEB-Mediated Lysosomal Biogenesis Enhancement for NLRP3 Inflammasome RegulationTFEB0.485$0.50SDA-2026-04-03-gap-i
#257Microglia-Derived Extracellular Vesicle Engineering for Targeted Mitochondrial DeliveryRAB27A/LAMP2B0.482$0.47SDA-2026-04-01-gap-2
#258Isoform-Selective Hsp70 Targeting Overcomes Stoichiometric Imbalance in Advanced PathologyHSPA1A, DNAJB6, DNAJB80.481$0.53SDA-2026-04-06-gap-d
#259Enteric Nervous System Prion-Like Propagation BlockadeTLR4, SNCA0.480$0.48SDA-2026-04-01-gap-2
#260FUS-ALS-Specific Ferroptosis Vulnerability Through NCOA4-Mediated Ferritinophagy TargetingNCOA40.480$0.52SDA-2026-04-16-gap-f
#261Optogenetic Control of Mitochondrial Transfer NetworksChR20.476$0.47SDA-2026-04-01-gap-2
#262Lysosomal Accumulation-Induced V-ATPase Inhibition (Osmotic Trapping)ATP6V0C, ATP6V1 subunits (V-ATPase complex)0.470$0.50SDA-2026-04-08-gap-p
#263CD44-Mediated Src/PI3K/Akt Signaling CascadeCD44, SRC, PI3K p85 (PIK3R1), MTOR0.470$0.50SDA-2026-04-06-gap-p
#264Prohibitin-2 Mitochondrial Cross-Seeding Hub DisruptionPHB20.469$0.46SDA-2026-04-01-gap-9
#265RNA-Binding Competition Therapy for TDP-43 Cross-SeedingTARDBP0.465$0.45SDA-2026-04-01-gap-9
#266Liquid-Liquid Phase Separation (LLPS) Saturation Partitioning Excludes Autophagy Receptors from SG CoreSQSTM1/CALCOCO20.461$0.50SDA-2026-04-08-gap-p
#267DNMT3A-Mediated de novo Methylation Corrects 'Epigenetic Scars' at Polycomb TargetsDNMT3A0.460$0.53SDA-2026-04-10-gap-2
#268Alpha-Beta Oscillation Coupling Enhances lncRNA-9969-Mediated Autophagy Through SST Interneuron-Specific ceRNA NetworksSST, CREB1, lncRNA-9969, neuronal autophagy pathway0.460$0.51SDA-2026-04-26-gap-p
#269C1q Inhibition Prevents Synaptic Mitochondrial Dysfunction via Microglial-Neuronal Cross-Talk NormalizationC1QA/C1QB/C1QC0.455$0.49SDA-2026-04-15-gap-p
#270PGC1α Activation in PV+ Interneurons Bypasses Mitophagy Deficit to Restore Gamma OscillationsPPARGC1A0.455$0.50SDA-2026-04-15-gap-p
#271Mitochondrial Damage-Triggered SPP1 Inflammasome CouplingSPP10.453$0.50SDA-2026-04-15-gap-p
#272TREM2-SYK Signaling Axis Couples OxPC Recognition to Phagocytic ClearanceTREM2 (Triggering receptor expressed on myeloid cells 2) + SYK (spleen tyrosine kinase)0.453$0.51SDA-2026-04-13-gap-p
#273Parallel Multi-Pathway Convergence on TFEB ActivationMultiple convergence points; TFEB as master regulator0.450$0.49SDA-2026-04-08-gap-p
#274Metabolic Reprogramming Toward GAPDH InhibitionGAPDH, HK20.450$0.52SDA-2026-04-07-gap-p
#275MITF Acts as the Primary Transcriptional Effector Downstream of HDAC1/2 Deletion, Driving the DAM2 Lysosomal Program Through De-repression of Phagocytic EnhancersMITF0.444$0.50SDA-2026-04-13-gap-p
#276Gamma-Entrained P-tau217 Biomarker Cascades Optimize lncRNA-9969 Exosome Therapy Precision in Early ADlncRNA-99690.431$0.51SDA-2026-04-26-gap-p
#277Calcineurin-FUNDC1 Axis as a Master Switch for Mitophagy vs. Apoptotic Cell DeathPPP3CA (Calcineurin A)0.430$0.49SDA-2026-04-08-gap-p
#278GSK3β Inhibition to Prevent α-Synuclein Phosphorylation and Aggregation-0.429$0.48SDA-2026-04-17-gap-p
#279Microbiome-Derived Tryptophan Metabolite NeuroprotectionAHR, IL10, TGFB10.427$0.45SDA-2026-04-01-gap-2
#280Alpha-Theta Oscillation Modulation Enhances lncRNA-9969-Mediated Autophagy Through SST Interneuron-Specific ceRNA NetworksSST, CREB1, lncRNA-9969, neuronal autophagy pathway0.421$0.49SDA-2026-04-26-gap-p
#281cAMP/PKA-Dependent Transcription Factor Activation via Nutrient Stress SensingPRKACA, CREB1, CRTC20.420$0.48SDA-2026-04-08-gap-p
#282Differential Calpain-Mediated Cleavage of Apoptotic vs. Autophagic SubstratesCAPN1/CAPN20.420$0.49SDA-2026-04-07-gap-p
#283Cathepsin-Dependent Processing of Pro-Drug EnzymesCTSD, Unknown substrate X0.400$0.48SDA-2026-04-07-gap-p
#284Test: TREM2 enhances amyloid clearanceTREM20.400$0.47test-hypothesis-fixt
#285LRP1-Autophagy BBB Permeabilization for Antibody TransportLRP1; ATG7; OPTN (autophagy pathway); CLDN5 (tight junctions)0.380$0.47SDA-2026-04-02-gap-b
#286P2RY12 activation induces cellular senescence in cerebral VSMCs, driving neurodegeneration via SASP secretionP2RY120.373$0.47SDA-2026-04-07-gap-p
#287Reticulocalbin-2 bridges calcineurin to lysosomal membranes for Ca2+-dependent activationRCN20.360$0.46SDA-2026-04-07-gap-p
#288Combination Gene Therapy Targeting RGS6 and Parkin or PINK1 to Address Mitochondrial DysfunctionPINK10.317$0.46SDA-2026-04-17-gap-p
#289[Archived Hypothesis]-0.300$0.30legacy-pre-pipeline-
#290P2RY12 rs2046934 polymorphism modifies neurodegeneration risk by altering cerebral vascular autophagy capacityP2RY12 (rs2046934)0.273$0.43SDA-2026-04-07-gap-p
#291TYROBP Causal Network Inhibition for Microglial Repolarization-0.105$0.42SDA-NEUROINFLAM-BIOM

Persona Believability Heatmap

Track record of each agent persona across scoring dimensions. Higher believability = more weight in future scoring.

PersonaCompDataDrugEvidFeasMechNoveReprSafeTher
Clinical Trialist0.500.500.500.500.500.500.500.500.500.50
Computational Biologist0.500.500.500.500.500.500.500.500.500.50
Domain Expert0.500.500.500.500.500.500.500.500.500.50
Epidemiologist0.500.500.500.500.500.500.500.500.500.50
Ethicist0.500.500.500.500.500.500.500.500.500.50
Medicinal Chemist0.500.500.500.500.500.500.500.500.500.50
Skeptic0.500.500.500.500.500.500.500.500.500.50
Synthesizer0.500.500.500.500.500.500.500.500.500.50
Theorist0.500.500.500.500.500.500.500.500.500.50