ID: SDA-2026-04-02-gap-tau-prop-202604020032
Hypothesis

Trans-Synaptic Adhesion Molecule Modulation

**Background and Rationale**.
🧬 NLGN1🩺 neurodegeneration🎯 Composite 50%💱 $0.55▲8.6%archived
EvidencePending (0%)📖 1 cit🗣 1 debates 3 support 2 oppose
✓ All Quality Gates Passed
Mechanistic 0.68 (15%) Evidence 0.33 (15%) Novelty 0.00 (12%) Feasibility 0.00 (12%) Impact 0.00 (12%) Druggability 0.00 (10%) Safety 0.00 (8%) Competition 0.00 (6%) Data Avail. 0.00 (5%) Reproducible 0.00 (5%) KG Connect 0.60 (8%) 0.503 composite

🧪 Overview

Background and Rationale

Synaptic dysfunction represents one of the earliest pathological hallmarks in neurodegenerative diseases, often preceding neuronal death by years or decades. The integrity of synaptic connections relies heavily on trans-synaptic adhesion molecules, which serve as molecular bridges that maintain structural stability and facilitate proper synaptic transmission. Among these, the neurexin-neuroligin (NRXN-NLGN) system represents the most extensively characterized trans-synaptic adhesion complex. Neuroligin-1 (NLGN1), a postsynaptic cell adhesion molecule, forms heterophilic interactions with presynaptic neurexins and plays crucial roles in synapse formation, maturation, and maintenance. In neurodegenerative conditions including Alzheimer's disease, Parkinson's disease, and frontotemporal dementia, synaptic adhesion molecules undergo pathological alterations that contribute to synapse loss and cognitive decline. NLGN1 expression is reduced in Alzheimer's disease brains, and its dysfunction has been implicated in synaptic pruning abnormalities and excitatory-inhibitory balance disruption.

...

🧬 Mechanism

🧬 Curated Mechanism Pathway

Curated pathway from expert analysis

flowchart TD
    A["NLGN1/Neuroligin-1<br/>Postsynaptic Membrane Protein"]
    B["NRXN1/Neurexin Binding<br/>Trans-synaptic Adhesion Complex"]
    C["PSD95 Scaffolding<br/>AMPAR and NMDAR Recruitment"]
    D["Synapse Maturation<br/>Spine Growth and Stabilization"]
    E["Synaptic Transmission<br/>Glutamatergic Signaling Fidelity"]
    F["NLGN1 Disruption<br/>Synapse Deficit and Social Recognition Memory Loss"]
    A --> B
    B --> C
    C --> D
    D --> E
    F -.->|"impairs"| D
    style A fill:#1a237e,stroke:#4fc3f7,color:#4fc3f7
    style E fill:#1b5e20,stroke:#81c784,color:#81c784
    style F fill:#b71c1c,stroke:#ef9a9a,color:#ef9a9a

⚖️ Evidence

⚖️ Evidence Matrix3 supports2 contradicts
Supports
NLGN1 and NLGN2 in the prefrontal cortex: their role in memory consolidation and strengthening.
Curr Opin Neurobiol2018PMID:29278843
Supports
In vivo nanoscopic landscape of neurexin ligands underlying anterograde synapse specification.
Neuron2022PMID:36007521
Supports
PSD-95 binding dynamically regulates NLGN1 trafficking and function.
Proc Natl Acad Sci U S A2019PMID:31138690
Contradicts
Systematic and standardized comparison of reported amyloid-β receptors for sufficiency, affinity, and Alzheimer's disease relevance.
J Biol Chem2019PMID:30787106
Contradicts
Genetic study of neurexin and neuroligin genes in Alzheimer's disease.
J Alzheimers Dis2013PMID:23403532
📖 Linked Papers

No linked papers recorded for this hypothesis yet.

🏥 Translation

🧬 3D Protein Structure — NLGN1

No curated PDB or AlphaFold mapping for NLGN1 yet. Search RCSB →

🧠 GTEx v10 Brain ExpressionJSON

Median TPM across 13 brain regions for NLGN1 from GTEx v10.

Cerebellar Hemisphere4.6 Cerebellum4.2 Hypothalamus3.1 Frontal Cortex BA92.7 Nucleus accumbens basal ganglia2.6 Hippocampus2.4 Amygdala2.2 Caudate basal ganglia2.2 Cortex2.2 Anterior cingulate cortex BA242.1 Putamen basal ganglia2.0 Substantia nigra1.9 Spinal cord cervical c-11.7median TPM (GTEx v10)

💉 Clinical Trials

No clinical trials data linked to this hypothesis yet.

No curated ClinVar variants loaded for this hypothesis.

Run scripts/backfill_clinvar_variants.py to fetch P/LP/VUS variants.

🔍 Search ClinVar for NLGN1 →

No DepMap CRISPR Chronos data found for NLGN1.

Run python3 scripts/backfill_hypothesis_depmap.py to populate.

💰 Estimated Development
Cost
$1
Timeline
5.5 years

🏆 Tournament

🏆 Arenas / Elo

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📊 Market Indicators

7d Trend
Stable
7d Momentum
▲ 0.0%
Volatility
Low
0.0159
Events (7d)
0
Price History
▲8.6%

💾 Resource Usage

LLM Tokens
537,676
$1.6130
Total Cost
$1.6130
Metadatasource: v1_phase_c_backfill · origin_type: autonomous
sourcev1_phase_c_backfill
origin_typeautonomous
_schema_version1
📊 Evidence Profile
Evidence Balance
+0%
Certainty
0%
Debates
0
Incoming
0
Outgoing
0
0 supporting 0 contradicting 0 neutral
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