ID: h-fbc439901e
Hypothesis

NAD+/SARM1 Axis Provides Metabolic Feedback Coupling Mitophagy to ER-Phagy

The NAD+/SARM1 axis represents a critical metabolic checkpoint that coordinates cellular stress responses through the integration of mitochondrial and endoplasmic reticulum quality control mechanisms.
🧬 SARM1 (SARM1), PARP1, SIRT1, SIRT3🩺 neurodegeneration🎯 Composite 58%💱 $0.55▼5.4%proposed
EvidencePending (0%)📖 0 cit🗣 1 debates 4 support 3 oppose
✓ All Quality Gates Passed
Mechanistic 0.48 (15%) Evidence 0.52 (15%) Novelty 0.70 (12%) Feasibility 0.50 (12%) Impact 0.58 (12%) Druggability 0.65 (10%) Safety 0.58 (8%) Competition 0.72 (6%) Data Avail. 0.55 (5%) Reproducible 0.50 (5%) KG Connect 0.50 (8%) 0.578 composite

🧪 Overview

Molecular Mechanism and Rationale

The NAD+/SARM1 axis represents a critical metabolic checkpoint that coordinates cellular stress responses through the integration of mitochondrial and endoplasmic reticulum quality control mechanisms. SARM1 (Sterile Alpha and TIR Motif Containing 1) functions as an inducible NAD+ glycohydrolase that becomes activated during axonal injury and cellular stress conditions. Upon activation, SARM1 rapidly depletes intracellular NAD+ pools through its enzymatic activity, converting NAD+ to ADP-ribose and nicotinamide. This depletion creates a metabolic crisis that triggers compensatory quality control pathways designed to maintain cellular homeostasis.

...

🧬 Mechanism

🧬 Curated Mechanism Pathway

Curated pathway from expert analysis

flowchart TD
    A["Target Gene: SARM1 SARM1 PARP1 SIRT1 SIRT3"]
    B["Molecular Mechanism<br/>Pathway Activation"]
    C["Cellular Phenotype<br/>Neuronal or Glial Response"]
    D["Network Effect<br/>Circuit-Level Consequence"]
    E["Disease Relevance<br/>Neurodegeneration Link"]
    A --> B --> C --> D --> E
    style A fill:#1a237e,stroke:#4fc3f7,color:#4fc3f7
    style E fill:#1b5e20,stroke:#81c784,color:#81c784

⚖️ Evidence

⚖️ Evidence Matrix4 supports3 contradicts
Supports
SARM1 activation induces rapid axonal degeneration via NAD+ depletion
Supports
SIRT3 deacetylates SOD2 and OPA1 to enhance mitophagy
Supports
NAD+ restoration protects against neurodegenerative models
Supports
NMN supplementation improves organelle quality in aging neurons
Contradicts
SARM1 is injury-activated, not disease-relevant in chronic neurodegeneration
Contradicts
NAD+ depletion is general stress signal; specific coordination mechanism unclear
Contradicts
SARM1 KO neuroprotective in injury but doesn't prevent all neurodegenerative pathology
📖 Linked Papers

No linked papers recorded for this hypothesis yet.

🏥 Translation

🧬 3D Protein Structure — SARM1

No curated PDB or AlphaFold mapping for SARM1 yet. Search RCSB →

🧠 GTEx v10 Brain ExpressionJSON

Median TPM across 13 brain regions for SARM1 (SARM1), PARP1, SIRT1, SIRT3 from GTEx v10.

Cerebellum17.8 Cerebellar Hemisphere15.8 Cortex5.5 Nucleus accumbens basal ganglia4.9 Frontal Cortex BA94.4 Hypothalamus3.9 Caudate basal ganglia3.7 Anterior cingulate cortex BA243.7 Spinal cord cervical c-13.3 Hippocampus3.1 Amygdala2.9 Putamen basal ganglia2.8 Substantia nigra2.5median TPM (GTEx v10)

💉 Clinical Trials

No clinical trials data linked to this hypothesis yet.

No curated ClinVar variants loaded for this hypothesis.

Run scripts/backfill_clinvar_variants.py to fetch P/LP/VUS variants.

🔍 Search ClinVar for SARM1 (SARM1), PARP1, SIRT1, SIRT3 →

No DepMap CRISPR Chronos data found for SARM1 (SARM1), PARP1, SIRT1, SIRT3.

Run python3 scripts/backfill_hypothesis_depmap.py to populate.

💰 Estimated Development
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🏆 Tournament

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📊 Market Indicators

7d Trend
Stable
7d Momentum
▼ 0.3%
Volatility
Low
0.0052
Events (7d)
2
Price History
▼5.4%

💾 Resource Usage

LLM Tokens
26,692
$0.0801
Total Cost
$0.0801

🔮 Predictions

🔎 Predictions vs Observations2 predictions · 0 with recorded observations
PredictionPredictedObservedStatusConf
IF PARP1 is pharmacologically inhibited (ABT-888, 10 mg/kg, i.p., daily) in 5xFAD mice for 8 weeks beginning at 4 months of age, THEN we will observe a 40-60% increase in XBP1s protein levels and 2.0-Western blot will show increased XBP1s (29 kDa) band intensity; qRT-PCR will show FAM134B and RTN3 mRNA upregulation; tunicamycin challenge (2 mg/kg, i.p., 6h) — no observation —pending0.65
IF primary cortical neurons from SARM1 knockout mice are treated with paraquat (50 μM, 24h) to induce oxidative stress, THEN we will observe a 2.0-3.0 fold increase in mitophagy flux (measured by mt-Kmt-Keima signal will shift from neutral (pH 7) to acidic (pH 4.5) compartments indicating enhanced mitophagic flux; p62/SQSTM1 phosphorylation at Ser403 will de— no observation —pending0.72
🔮 Falsifiable Predictions (2)
pendingconf 72%
IF primary cortical neurons from SARM1 knockout mice are treated with paraquat (50 μM, 24h) to induce oxidative stress, THEN we will observe a 2.0-3.0 fold increase in mitophagy flux (measured by mt-Keima ratio) compared to wild-type neurons, within 48 hours post-treatment.
Predicted outcome: mt-Keima signal will shift from neutral (pH 7) to acidic (pH 4.5) compartments indicating enhanced mitophagic flux; p62/SQSTM1 phosphorylation at Ser4
Falsification: If mt-Keima acidification ratios are not significantly different (p>0.05) between SARM1 KO and WT neurons after oxidative stress challenge, the hypothesis that SARM1-mediated NAD+ depletion normally r
pendingconf 65%
IF PARP1 is pharmacologically inhibited (ABT-888, 10 mg/kg, i.p., daily) in 5xFAD mice for 8 weeks beginning at 4 months of age, THEN we will observe a 40-60% increase in XBP1s protein levels and 2.0-2.5 fold increase in FAM134B mRNA expression in cortex, with corresponding 35-45% reduction in ER st
Predicted outcome: Western blot will show increased XBP1s (29 kDa) band intensity; qRT-PCR will show FAM134B and RTN3 mRNA upregulation; tunicamycin challenge (2 mg/kg,
Falsification: If PARP1 inhibition fails to increase XBP1s or FAM134B expression (p>0.05), and ER stress markers remain elevated in ABT-888-treated 5xFAD mice compared to vehicle controls, the proposed PARP1→NAD+→XB
Metadatasource: v1_phase_c_backfill · origin_type: debate_synthesizer
sourcev1_phase_c_backfill
origin_typedebate_synthesizer
_schema_version1
📊 Evidence Profile
Evidence Balance
+0%
Certainty
0%
Debates
0
Incoming
0
Outgoing
0
0 supporting 0 contradicting 0 neutral
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