Spec Browser

1949 specs in docs/planning/specs/

All (1949)Auto-generated (1949)

[Senate] Resolve open PRs #913 + #984 given v1 freeze Auto-generated 2026-05-20

[Senate] Finish bridge.py removal (PR #1014 closed) Auto-generated 2026-05-20

[Senate] Audit watchdog auto-complete behavior on a recurring cadence Auto-generated 2026-05-20

[Pantheon] Auto-detect bare-name persona mentions in followups Auto-generated 2026-05-20

[Senate] AGENTS.md re-trim: file regrew past 25k Read cap Auto-generated 2026-05-20

[UI] Add hypothesis comparison view to Exchange Auto-generated 2026-05-01

Fix Missing /notebooks Route Handler (500 Error) Auto-generated 2026-05-01

Broken links in /entity (HTTP 404, 517356 links) Auto-generated 2026-05-01

[Artifacts] Harden Mol* fallback gene escaping and URL encoding Auto-generated ▸ [Artifacts] Harden Mol* fallback ge… 2026-05-01

[UI] Fix health endpoint — replace missing knowledge_nodes table with canonical_entities Auto-generated ▸ [UI] Fix health endpoint — replace … 2026-05-01

Dynamic Content Routes Failing to Load (Status 0) Auto-generated 2026-05-01

[Artifacts] Create Jupyter notebooks for top 5 analyses Auto-generated 2026-05-01

[Demo] Create polished analysis walkthrough for top 3 analyses Auto-generated 2026-05-01

[Demo] Add Mol* 3D protein viewer to hypothesis pages for target proteins Auto-generated ▸ [Demo] Add Mol* 3D protein viewer t… 2026-05-01

[Exchange] Add protocols to 10 experiments Auto-generated ▸ [Exchange] Add protocols to 10 expe… 2026-05-01

[Senate] Broken links in /quests (HTTP 404, 6517 links) Auto-generated 2026-05-01

Dynamic Content Pages Missing - Content Generation System Failure Auto-generated 2026-05-01

Analysis System Backend Failure — Spec Auto-generated 2026-05-01

Template variable not properly resolved in graph visualization links Auto-generated 2026-05-01

[Atlas] Expand knowledge graph — add edges from PubMed abstracts for top entities Auto-generated 2026-05-01

Broken links in /demo (HTTP 0, 53851 links) Auto-generated ▸ Broken links in /demo (HTTP 0, 5385… 2026-05-01

Broken links in /notebook (HTTP 0, 116 links) Auto-generated ▸ Broken links in /notebook (HTTP 0, … 2026-05-01

[UI] Fix /atlas 500 error — _cache_page NameError Auto-generated ▸ [UI] Fix /atlas 500 error — _cache_… 2026-05-01

[Demo] Enrich top 5 hypothesis evidence chains with PubMed citations Auto-generated ▸ [Demo] Enrich top 5 hypothesis evid… 2026-05-01

Broken links in /dashboard (HTTP 404, 5931 links) Auto-generated 2026-05-01

[Senate] Complete Backup & Disaster Recovery Infrastructure Auto-generated 2026-05-01

[Demo] Replace 0-Experiments stat on demo page with Notebooks count Auto-generated ▸ [Demo] Replace 0-Experiments stat o… 2026-05-01

Missing notebooks endpoint implementation causing 500 server error Auto-generated 2026-05-01

[UI] Fix HTTP method mismatch on dedup scan endpoint Auto-generated ▸ HTTP method mismatch on dedup scan … 2026-05-01

[Artifacts] Harden notebook coverage CI diagnostics for demo readiness Auto-generated ▸ [Artifacts] Harden notebook coverag… 2026-05-01

[Artifacts] Link generated notebook stubs into artifacts registry Auto-generated ▸ [Artifacts] Link generated notebook… 2026-05-01

[System] Task-spec allowed_paths schema: per-task file-scope enforcement Auto-generated ▸ [System] Task-spec allowed_paths sc… 2026-05-01

[Atlas] Discourse spaces — landscape-scoped discussion forums Auto-generated ▸ [Atlas] Discourse spaces — landscap… 2026-05-01

[Atlas] Escalate: Database corruption blocks mermaid task ef972520 Auto-generated 2026-05-01

Broken links in /clinical-trials (HTTP 0, 26926 links) Auto-generated ▸ Broken links in /clinical-trials (H… 2026-05-01

[UI] Add hypothesis comparison modal to Exchange page Auto-generated ▸ [UI] Add hypothesis comparison moda… 2026-05-01

[Exchange] Add /experiments page — browsable experiment library with protocols Auto-generated ▸ [Exchange] Add /experiments page — … 2026-05-01

[Senate] Knowledge growth rate tracking and trajectory Auto-generated 2026-05-01

Spec: [Exchange] Enrich target profiles — add druggability analysis and clinical context Auto-generated 2026-05-01

[UI] Mobile responsive improvements across all pages Auto-generated 2026-05-01

[Senate] SALVAGE: review lost commit 07d886df (Senate calibration slashing driver) Auto-generated ▸ [Senate] SALVAGE: review lost commi… 2026-05-01

Broken links in /missions (HTTP 500, 3260 links) Auto-generated 2026-05-01

[Exchange] Backfill gene_expression_context batch 2 — next 30 hypotheses Auto-generated ▸ [Exchange] Backfill gene_expression… 2026-05-01

[UI] Fix /experiments 500 error and /hypotheses 404 Auto-generated ▸ [UI] Fix /experiments 500 error and… 2026-05-01

[Exchange] Enrich next 20 hypotheses with PubMed abstracts in evidence Auto-generated ▸ [Exchange] Enrich next 20 hypothese… 2026-05-01

Missing Dynamic Content Generation Auto-generated ▸ Missing Dynamic Content Generation 2026-05-01

[UI] Missing hypothesis pages for all h-prefixed hypothesis IDs Auto-generated 2026-05-01

Broken links in /wiki (HTTP 502, 157 links) Auto-generated 2026-05-01

[Agora] Fix Theorist tool loop - debates failing with MAX_TOOL_ROUNDS Auto-generated ▸ [Agora] Fix Theorist tool loop - de… 2026-05-01

[Forge] Artifact enrichment quest — evaluation consumer Auto-generated 2026-05-01

[Agora] Add PubMed evidence to 20 hypotheses with thin evidence sections Auto-generated 2026-05-01

Null Analysis ID Generation Breaking Analysis Links Auto-generated ▸ Null Analysis ID Generation Breakin… 2026-05-01

Task: Missing Hypothesis Content Generation [task:f83927a0-35b1-43de-9120-cd09a870be46] Auto-generated ▸ Missing Hypothesis Content Generati… 2026-05-01

[Demo] Harden link checker for redirect-aware demo verification Auto-generated ▸ [Demo] Harden link checker for redi… 2026-05-01

[Senate] Fix path traversal in bridge.py upload with Path.resolve() Auto-generated ▸ [Senate] Fix path traversal in brid… 2026-05-01

Spec: Funded-Mission Spotlight Component Auto-generated 2026-05-01

Missing API Endpoints Auto-generated ▸ Missing API Endpoints 2026-05-01

[UI] Add universal search bar with autocomplete to navigation Auto-generated 2026-05-01

[UI] Add universal search bar with autocomplete to navigation Auto-generated ▸ [UI] Add universal search bar with … 2026-05-01

[Atlas] Gap-driven analysis pipeline Auto-generated 2026-05-01

[Exchange] Enrich top hypotheses #4-#10 with pathway diagrams and clinical trials Auto-generated ▸ [Exchange] Enrich top hypotheses #4… 2026-05-01

[Forge] Add ABC Atlas (Allen Brain Cell Atlas) and MERFISH spatial datasets Auto-generated ▸ [Forge] Add ABC Atlas (Allen Brain … 2026-05-01

[Forge] Scan 30 recent skill execution logs for timeout and schema error patterns Auto-generated 2026-05-01

Spec: King of the Hill — Top-20 Composite Score Matchups Auto-generated 2026-05-01

[UI] Fix hypothesis detail pages timing out — critical demo blocker Auto-generated ▸ [UI] Fix hypothesis detail pages ti… 2026-05-01

Broken links in /analyses (HTTP 404, 55 links) Auto-generated 2026-05-01

[UI] Add /experiments listing page with filterable experiment cards Auto-generated ▸ [UI] Add /experiments listing page … 2026-05-01

Broken links in /artifacts (HTTP 404, 10 links) Auto-generated 2026-05-01

[Senate] Implement authentication on POST /api/debate/trigger endpoint Auto-generated ▸ [Senate] Implement authentication o… 2026-05-01

Broken links in /papers (HTTP 404, 1608 links) Auto-generated 2026-05-01

[UI] Server Infrastructure Failure - Port 8000 Conflict Auto-generated 2026-05-01

[Watchdog] [Artifacts] Audit all 67 stub notebooks (<10KB) Auto-generated 2026-05-01

Broken links in /hypothesis (HTTP 500, 2 links) Auto-generated ▸ Broken links in /hypothesis (HTTP 5… 2026-05-01

[UI] Fix orphan checker false positives for KG edges Auto-generated ▸ [UI] Fix orphan checker false posit… 2026-05-01

[Exchange] Backfill hypothesis stats Auto-generated ▸ [Exchange] Backfill tokens_used, kg… 2026-05-01

[Atlas] Build automated gap scanner — analyze new papers for contradictions and unknowns Auto-generated ▸ [Atlas] Build automated gap scanner… 2026-05-01

[Search] Ensure /search page works end-to-end with all content types Auto-generated 2026-05-01

[UI] Create shared CSS component and page template system Auto-generated 2026-05-01

[Atlas] Cross-link wiki pages with hypotheses and analyses Auto-generated 2026-05-01

[Demo] Harden guided demo route checks and repair broken path references Auto-generated ▸ [Demo] Harden guided demo route che… 2026-05-01

[Atlas] KG ↔ dataset cross-link driver (driver #30) Auto-generated 2026-05-01

[Quality] Agent walkthrough: audit every top-level page for content quality Auto-generated ▸ [Quality] Review analysis showcase … 2026-05-01

[Forge] Build automated PubMed update pipeline for hypothesis evidence Auto-generated 2026-05-01

Broken links in /gaps (HTTP 0, 53859 links) Auto-generated ▸ Broken links in /gaps (HTTP 0, 5385… 2026-05-01

[Exchange] Enrich next batch of thin hypotheses (batch 2) Auto-generated ▸ [Exchange] Enrich next batch of thi… 2026-05-01

[UI] Universal activity feed on dashboard Auto-generated ▸ [UI] Universal activity feed on das… 2026-05-01

[Demo] Create Polished Analysis Walkthrough for Top 3 Analyses Auto-generated 2026-05-01

Spec: Synthesis Engine — Auto-Aggregate Discussion Threads Auto-generated ▸ [Agora] Synthesis engine — auto-agg… 2026-05-01

[UI] Clean up duplicate page cache definitions in api.py Auto-generated ▸ [UI] Clean up duplicate page cache … 2026-05-01

[Exchange] Hypothesis detail page enrichment Auto-generated 2026-05-01

[Exchange] Hypothesis detail page enrichment Auto-generated 2026-05-01

[UI] Harden link checker against transient API restart cascades Auto-generated ▸ [UI] Harden link checker against tr… 2026-05-01

Analytics: Daily Rollup for site_daily_stats Auto-generated 2026-05-01

[Artifacts] Score 20 unscored artifacts for quality Auto-generated ▸ [Artifacts] Score 20 unscored artif… 2026-05-01

[Exchange] Build bidding mechanism for gaps, hypotheses, and experiments Auto-generated ▸ [Exchange] Build bidding mechanism … 2026-05-01

Broken links in /clinical-trials (HTTP 404, 2961 links) Auto-generated 2026-05-01

[Artifacts] Populate structural_data (PDB/UniProt/AlphaFold) for top 15 demo targets to activate Mol* viewer Auto-generated ▸ [Artifacts] Populate structural_dat… 2026-05-01

Broken links in /experiments (HTTP 500, 1 links) Auto-generated ▸ Broken links in /experiments (HTTP … 2026-05-01

[Agora] Broken links in /analysis (HTTP 404, 8 links) Auto-generated ▸ Broken links in /analysis (HTTP 404… 2026-05-01

Broken links in /cell-types (HTTP 404, 15 links) Auto-generated ▸ Broken links in /cell-types (HTTP 4… 2026-05-01

[Demo] Create Polished Analysis Walkthrough for Top 3 Analyses Auto-generated 2026-05-01

[Atlas] Populate Papers tab on hypothesis pages from evidence PMIDs Auto-generated ▸ Populate Papers tab on hypothesis p… 2026-05-01

[Forge] Add analysis environment health checks and corruption detection Auto-generated ▸ [Forge] Add analysis environment he… 2026-05-01

[Artifacts] A17.6: Evidence matrix component on hypothesis pages Auto-generated ▸ [Artifacts] A17.6: Evidence matrix … 2026-05-01

[Demo] CI: Validate core demo routes and fix first failing endpoint Auto-generated ▸ [Demo] CI: Validate core demo route… 2026-05-01

[UI] Fix /notebooks 500 error (empty tool_data max()) and /atlas.html NameError Auto-generated ▸ [UI] Harden senate_performance_page… 2026-05-01

[Agora] Run new analysis: Blood-brain barrier dysfunction biomarkers Auto-generated 2026-05-01

Spec: Abandoned-Run Watchdog (every 1h) Auto-generated 2026-05-01

[Atlas] Audit 50 KG edges for relation type accuracy and evidence strength Auto-generated 2026-05-01

Broken links in /search (HTTP 0, 26925 links) Auto-generated ▸ Broken links in /search (HTTP 0, 26… 2026-05-01

Spec: New Gap Identification from Debate Transcripts and PubMed Abstracts Auto-generated ▸ [Gaps] New gap identification from … 2026-05-01

[Senate] Add Task Quality Review Spec Auto-generated 2026-05-01

Complete Service Unavailability - Server Connection Failure Auto-generated 2026-05-01

[Exchange] CI: Enrich thin hypotheses — expand next batch with descriptions, evidence, pathway diagrams Auto-generated 2026-05-01

[Forge] Expand tool library (ongoing) Auto-generated ▸ [Forge] Expand tool library (ongoin… 2026-05-01

Spec: Extract KG Edges from 15 Recent Debate Sessions Auto-generated ▸ [Atlas] Extract KG edges from 15 re… 2026-05-01

Broken links in /hypothesis (HTTP 500, 10 links) Auto-generated 2026-05-01

[Artifacts] Harden demo smoke check coverage for rich artifact routes Auto-generated ▸ [Artifacts] Harden demo smoke check… 2026-05-01

[Senate] Link validation sweep Auto-generated 2026-05-01

f0866643 — Economics Dashboard Page Auto-generated ▸ [Economics] Add /economics dashboar… 2026-05-01

Static asset serving not configured Auto-generated 2026-05-01

Analysis-database mismatch in URL patterns Auto-generated 2026-05-01

Complete Infrastructure Failure - 502 Bad Gateway Auto-generated 2026-05-01

[Search] Ensure /search page works end-to-end with all content types Auto-generated 2026-05-01

[Senate] Agent activity heartbeat (driver #2) Auto-generated 2026-05-01

[Demo] Fix broken internal links on showcase and dashboard pages Auto-generated ▸ [Demo] Fix broken internal links on… 2026-05-01

[Atlas] Expand Knowledge Graph — Add Edges from PubMed Abstracts Auto-generated 2026-05-01

[UI] Search page: support URL parameters for deep linking Auto-generated ▸ [UI] Search page: support URL param… 2026-05-01

[Exchange] Cross-analysis convergence detection Auto-generated ▸ [Exchange] Cross-analysis convergen… 2026-05-01

[Atlas] Broken links in /api (HTTP 502, 149 links) Auto-generated 2026-05-01

[UI] Add /experiments listing page with filterable table Auto-generated ▸ [UI] Add /experiments listing page … 2026-05-01

Systematic entity page failures across all biological entities Auto-generated 2026-05-01

JavaScript Template Literal Variables Not Resolved in Links Auto-generated 2026-05-01

Notebook and Artifact Systems Partially Down Auto-generated 2026-05-01

Broken links in /notebook (HTTP 500, 10 links) Auto-generated ▸ Broken links in /notebook (HTTP 500… 2026-05-01

[Atlas] Trust scores on knowledge graph edges Auto-generated ▸ [Atlas] Trust scores on knowledge g… 2026-05-01

[Atlas] Trust scores on knowledge graph edges Auto-generated 2026-05-01

[Artifacts] Build artifact gallery page at /artifacts Auto-generated 2026-05-01

[UI] Add hypothesis comparison view to Exchange Auto-generated 2026-05-01

[Senate] Throttle gap factory: 2472 open gaps, 0.77% conversion to analyses Auto-generated ▸ [Senate] Throttle gap factory: 2472… 2026-05-01

[Senate] Automated Quality Gates Auto-generated 2026-05-01

[Senate] Add convergence monitoring dashboard section Auto-generated ▸ [Senate] Add convergence monitoring… 2026-05-01

[Senate] Secure or remove bridge.py /exec arbitrary command execution endpoint Auto-generated ▸ [Senate] Secure or remove bridge.py… 2026-05-01

[Senate] Add process watchdog that kills runaway analyses and orphaned processes Auto-generated ▸ [Senate] Add process watchdog that … 2026-05-01

[Atlas] Broken links in /entity (HTTP 404, 515684 links) Auto-generated 2026-05-01

[Exchange] Enrich top 5 thin hypotheses with deep descriptions and evidence Auto-generated ▸ [Exchange] Enrich top 5 thin hypoth… 2026-05-01

[Demo] Generate figures for all analyses with debates Auto-generated 2026-05-01

Spec: Unified literature_search Tool Auto-generated ▸ [Forge] Unified literature_search t… 2026-05-01

[UI] Add Showcase dropdown with Demo and Vision Auto-generated ▸ [UI] Add Showcase dropdown with Dem… 2026-05-01

[Atlas] Entity canonicalization and ontology alignment Auto-generated ▸ [Atlas] Entity canonicalization and… 2026-05-01

[Forge] Neo4j Graph Database Service Setup Auto-generated ▸ [Forge] Neo4j graph database servic… 2026-05-01

[UI] Add breadcrumbs and back-navigation to all detail pages Auto-generated 2026-05-01

[Senate] Populate task_runs.last_commit_sha on completion Auto-generated 2026-05-01

[Atlas] Squad findings bubble-up driver (driver #20) Auto-generated 2026-05-01

Spec: Knowledge Garden — Automated Pruning, Dedup, Quality Enforcement Auto-generated ▸ [Senate] Knowledge garden — automat… 2026-05-01

[Forge] Build automated PubMed update pipeline for hypothesis evidence Auto-generated 2026-05-01

Task: Knowledge Graph Visualization — Verify /graph Page and Top 5 Diseases Auto-generated 2026-05-01

Complete Site Unavailable - Server/Service Down Auto-generated ▸ Complete Site Unavailable - Server/… 2026-05-01

[Exchange] Enrich TREM2 hypothesis with mermaid pathway diagram and PubMed evidence Auto-generated ▸ [Exchange] Enrich TREM2 hypothesis … 2026-05-01

[Senate] Fix /senate route 500 error Auto-generated 2026-05-01

[UI] Empty Path Reference in Link Generation Auto-generated 2026-05-01

[Demo] Add guided five-layer walkthrough page and homepage entrypoint Auto-generated ▸ [Demo] Add guided five-layer walkth… 2026-05-01

[Exchange] Create market-maker agent that provides liquidity and price discovery Auto-generated ▸ [Exchange] Create market-maker agen… 2026-05-01

[Agora] Recover failed analyses — reprocess debates with valid synthesis Auto-generated ▸ [Agora] Recover failed analyses — r… 2026-05-01

Spec: ecd16437-2486-45f1-ae97-8c1516e7285c — Broken Links in /resources (HTTP 502) Auto-generated 2026-05-01

[Exchange] Enrich next 5 thin hypotheses with descriptions, pathways, clinical trials Auto-generated ▸ [Exchange] Enrich next 5 thin hypot… 2026-05-01

Broken links in /mission (HTTP 0, 4 links) Auto-generated 2026-05-01

[Forge] Challenge page shows linked benchmark with leaderboard Auto-generated 2026-05-01

[Atlas] Fix 500 error on /atlas page — _cache_page NameError Auto-generated ▸ [Atlas] Fix 500 error on /atlas pag… 2026-05-01

[Agora] Debate CI clean: verify clean state, fix RERUN noise, debate remaining analyses Auto-generated 2026-05-01

Broken links in /brain-regions (HTTP 0, 12 links) Auto-generated 2026-05-01

[Search] Ensure /search page works end-to-end with all content types Auto-generated 2026-05-01

[UI] Fix NoneType error in entity_detail route Auto-generated ▸ [UI] Fix NoneType error in entity_d… 2026-05-01

Spec: [Agora] Run debate sessions for 5 high-composite-score hypotheses lacking synthesizer output Auto-generated 2026-05-01

[UI] Add Mol* 3D protein structure viewer to hypothesis pages Auto-generated ▸ [UI] Add Mol* 3D protein structure … 2026-05-01

[Senate] Build provenance tracking — link every DB change to agent + task + commit Auto-generated ▸ [Senate] Build provenance tracking … 2026-05-01

e95cbcab verify health check post fix spec Auto-generated 2026-05-01

[Operations] Complete service outage - all core pages returning status 0 Auto-generated 2026-05-01

Analysis Detail Pages Infrastructure Failure Auto-generated 2026-05-01

[Demo] Enrich top hypotheses with PubMed papers and evidence ratings Auto-generated ▸ [Demo] Enrich top hypotheses with P… 2026-05-01

[Wiki] Add structured infoboxes to gene/protein wiki pages Auto-generated 2026-05-01

Broken links in /hypothesis (HTTP 500, 4659 links) Auto-generated 2026-05-01

[Atlas] Expand KG with PubMed-backed edges for top entities Auto-generated 2026-05-01

Broken links in /hypothesis (HTTP 404, 10 links) Auto-generated 2026-05-01

[Demo] Build guided demo walkthrough page at /demo Auto-generated ▸ [Demo] Build guided demo walkthroug… 2026-05-01

[Senate] World-model-aware project ranking Auto-generated ▸ [Senate] World-model-aware project … 2026-05-01

Spec: Agent Performance Dashboard Auto-generated 2026-05-01

[Exchange] Add hypothesis comparison view with side-by-side scores and evidence Auto-generated ▸ [Exchange] Add hypothesis compariso… 2026-05-01

Fix SyntaxWarning in cli.py replicate command Auto-generated 2026-05-01

[Exchange] Enrich top hypotheses with PubMed citations — batch 2 (0-citation high-scorers) Auto-generated ▸ [Exchange] Enrich top hypotheses wi… 2026-05-01

[UI] Add hypothesis comparison view to Exchange Auto-generated 2026-05-01

[Atlas] Extract KG edges from 800+ unmined paper abstracts Auto-generated ▸ [Atlas] Extract KG edges from 800+ … 2026-05-01

[Atlas] Expand KG — Add edges from PubMed abstracts for top entities Auto-generated 2026-05-01

[Demo] Generate figures for all analyses with debates Auto-generated 2026-05-01

[Atlas] Add origin badges to artifact detail pages Auto-generated 2026-05-01

[Forge] Expose verify_reproducibility via API + pinned_artifacts for analyses Auto-generated 2026-05-01

[Agora] Run new analysis: Lipid rafts in synaptic neurodegeneration Auto-generated 2026-05-01

[Senate] Security Manager: establish emergency access recovery procedures Auto-generated 2026-05-01

[Wiki] Add mermaid pathway diagrams to top 50 entity pages Auto-generated 2026-05-01

[Senate] Audit 20 failed quality gates and document triage decisions Auto-generated 2026-05-01

Showing 200 of 1949 specs — use search to narrow results