Entity Detail — Knowledge Graph Node
This page aggregates everything SciDEX knows about ARK: its mechanistic relationships (Knowledge Graph edges), hypotheses targeting it, analyses mentioning it, and supporting scientific papers. The interactive graph below shows its immediate neighbors. All content is AI-synthesized from peer-reviewed literature.
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Knowledge base pages for this entity
| Target | Relation | Type | Str |
|---|---|---|---|
| benchmark_ot_ad_answer_key:ARK | data_in | dataset_row | 0.00 |
| DRONC | activates | protein | 0.80 |
| Source | Relation | Type | Str |
|---|---|---|---|
| benchmark_ot_ad_answer_key:ARK | data_in | dataset_row | 0.00 |
Hypotheses where this entity is a therapeutic target
Scientific analyses that reference this entity
neurodegeneration | 2026-04-11 | 0 hypotheses
neurodegeneration | 2026-04-11 | 0 hypotheses
Experimental studies targeting or related to this entity
| Experiment | Type | Disease | Score | Feasibility | Model | Status | Est. Cost |
|---|---|---|---|---|---|---|---|
| AECII-specific HMGCS2 overexpression in mouse pulmonary fibrosis | validation | idiopathic pulmonary fibrosis | 0.950 | 0.00 | C57BL/6 mice with AECII-specif | proposed | N/A |
| Ketogenic diet fat threshold analysis in wild-type mice | validation | metabolic disease | 0.900 | 0.00 | C57BL/6J wild-type mice | proposed | N/A |
| HMGCS2 gain-of-function in AECII lipid metabolism regulation | exploratory | idiopathic pulmonary fibrosis | 0.900 | 0.00 | human AECIIs | proposed | N/A |
| Ketogenic diet efficacy in diet-induced obese mice | validation | obesity, metabolic disease | 0.900 | 0.00 | C57BL/6J diet-induced obese mi | proposed | N/A |
| Autophagy receptor identification for stress granule elimination | exploratory | neurodegenerative diseases | 0.900 | 0.00 | cultured cells under arsenite | proposed | N/A |
| Epigenetic clocks association with brain aging patterns in older women | exploratory | cognitive impairment and demen | 0.900 | 0.00 | human patients | proposed | N/A |
| Chi3l1 deletion effects on baseline glial activation in mice | validation | baseline neuroinflammation | 0.900 | 0.00 | Chi3l1 knockout mice | proposed | N/A |
| Microarray and single-cell RNA analysis of lipid metabolism genes | exploratory | idiopathic pulmonary fibrosis | 0.850 | 0.00 | human patients, mouse models | proposed | N/A |
| CHI3L1 variant association with AD progression in human patients | exploratory | Alzheimer's disease | 0.850 | 0.00 | human patients | proposed | N/A |
Scientific publications cited in analyses involving this entity
| Title & PMID | Authors | Journal | Year | Citations |
|---|---|---|---|---|
| TDP-43 Triggers Mitochondrial DNA Release via mPTP to Activate cGAS/STING in ALS [PMID:33031745] | Yu CH, Davidson S, Harapas CR, Hilton JB | Cell | 2020 | 2 |
| Monocyte LOXHD1 and RHOB Expression Predictive of Progressive Systemic Sclerosis [PMID:40771159] | Padilla CM, Lafyatis R, Gibson KF, Morse | Arthritis Care Res (Hoboken) | 2026 | 0 |
| Obstructive sleep apnea, biomarker profiles, and clinical progression in Parkins [PMID:41499940] | Zhu S, An D, Liu X | Sleep Med | 2026 | 0 |
| SuPAR levels are increased in sera of euthymic patients with bipolar disorder an [PMID:41605346] | Kök Kendirlioğlu B, Çörekli Kaymakçı E, | J Affect Disord | 2026 | 0 |
| Chitinase-like Proteins YKL-40 and YKL-39 in Colorectal Cancer. [PMID:41677627] | Ivanova T, Kazakova M, Dikov D, Dzhambov | Cells | 2026 | 0 |
| Correction: CHI3L1: An Emerging Player in Neuroinflammation and Neurodegeneratio [PMID:41699333] | Mushtaq Umar; Seh Bilal Ahmad; Khanday F | Molecular Neurobiology | 2026 | 0 |
| UNC93B1 promotes pancreatic cancer progression through modulation of cGAS-STING [PMID:41716413] | Yang H, Li Y, Su J, Zhang H, Zhu W et al | Front Immunol | 2026 | 0 |
| Association of Alzheimer's disease progression with YKL40 levels in peripheral b [PMID:41725729] | Yang Q, Wang R, Pei J, Fu Q, Zhan Y et a | Front Neurol | 2026 | 0 |
| Constitutive neuronal expression and disease-associated upregulation of chitinas [PMID:41762671] | Gaur N, Angerer C, Gunes ZI, Ancau M, Wa | Brain | 2026 | 0 |
| Plasma CHI3L1 as a marker of cognitive and structural brain changes in radiologi [PMID:41953284] | Schneider R, Brand-Arzamendi K, Lim TR, | BMJ Neurol Open | 2026 | 0 |
| Enhancing TREM2 expression activates microglia and modestly mitigates tau pathol [PMID:40122810] | ["Chen Kai", "Li Fuyao", "Zhang Shuwen", | Journal of neuroinflammation | 2025 | 0 |
| Isoginkgetin antagonizes ALS pathologies in its animal and patient iPSC models v [PMID:41094045] | Li A, Huang S, Cao SQ, Lin J, Zhao L, Yu | EMBO molecular medicine | 2025 | 0 |
| Enhancing TREM2 expression activates microglia and modestly mitigates tau pathol [PMID:40122810] | ["Chen Kai", "Li Fuyao", "Zhang Shuwen", | Journal of neuroinflammation | 2025 | 0 |
| Neurodegeneration and demyelination in multiple sclerosis. [PMID:38889714] | Garton T, Gadani SP, Gill AJ, Calabresi | Neuron | 2024 | 0 |
| STING orchestrates the neuronal inflammatory stress response in multiple scleros [PMID:38878778] | Woo MS, Mayer C, Binkle-Ladisch L, Sonne | Cell | 2024 | 0 |
| Air pollution, glymphatic impairment, and Alzheimer's disease. [PMID:37777345] | Hussain R, Graham U, Elder A, Nedergaard | Trends in neurosciences | 2023 | 0 |
| Roles of neuropathology-associated reactive astrocytes: a systematic review. [PMID:36915214] | Lawrence JM, Schardien K, Wigdahl B, Non | Acta neuropathologica communic | 2023 | 0 |
| Gasdermin-E mediates mitochondrial damage in axons and neurodegeneration. [PMID:36917977] | Neel DV, Basu H, Gunner G, Bergstresser | Neuron | 2023 | 0 |
| TDP-43 Triggers Mitochondrial DNA Release via mPTP to Activate cGAS/STING in ALS [PMID:33031745] | Yu CH, Davidson S, Harapas CR, Hilton JB | Cell | 2020 | 0 |
| Neurodegeneration and Inflammation-An Interesting Interplay in Parkinson's Disea [PMID:33182554] | Marogianni C, Sokratous M, Dardiotis E, | International journal of molec | 2020 | 0 |
Multi-agent debates referencing this entity
closed · Rounds: 4 · Score: 0.50 · 2026-04-20
closed · Rounds: 4 · Score: 0.50 · 2026-04-20
Hypotheses and analyses mentioning ARK in their description or question text
Score: 0.790 · neurodegeneration · 2026-04-22
## Mechanistic Overview NMN Supplementation Restores SIRT1/p66Shc/FOXO3 Epigenetic Axis and Dopaminergic Neuron Survival
Score: 0.784 · neurodegeneration · 2026-04-15
## Mechanistic Overview Integrated Biomarker Panel for Therapeutic Window Identification starts from the claim that modu
Score: 0.760 · neurodegeneration · 2026-04-29
Heterozygous GBA1 loss of function reduces beta-glucocerebrosidase activity, disrupts lysosomal lipid handling, and prom
Score: 0.760 · als · 2026-04-27
Loss of nuclear TDP-43 in ALS motor neurons first manifests as aberrant inclusion of the STMN2 cryptic exon 2a, producin
Score: 0.757 · neurodegeneration · 2026-04-17
## Mechanistic Overview sTREM2 as Biomarker of Cystatin-C Therapeutic Efficacy starts from the claim that modulating not
Score: 0.745 · neurodegeneration · 2026-05-10
AAV9-mediated overexpression of LAMP2A enhances chaperone-mediated autophagy to selectively degrade pathological alpha-s
Score: 0.738 · alzheimers · 2026-04-02
## Mechanistic Overview SIRT3-Mediated Mitochondrial Deacetylation Failure with PINK1/Parkin Mitophagy Dysfunction start
Score: 0.735 · alzheimers · 2026-04-04
## Mechanistic Overview Stage-Specific TREM2 Biomarker-Guided Switching — Agonist in Amyloid Phase, Antagonist in Tau Ph
Score: 0.724 · neuroscience · 2026-04-26
FRAP-based measurement of TDP-43 liquid-liquid phase separation state provides a continuous biomarker of nuclear-cytopla
Score: 0.723 · biomarkers · 2026-04-22
## Mechanistic Overview CSF YKL-40 as a Priming-Specific Chitinase Marker starts from the claim that modulating CHI3L1/Y
Score: 0.720 · neurodegeneration · 2026-04-28
Targeted inhibition of NLRP3 inflammasome activation attenuates alpha-synuclein-driven microglial neuroinflammation, red
Score: 0.720 · neurodegeneration · 2026-05-01
GBA1 mutations represent the strongest genetic risk factor for PD (OR 5-20x), and GCase dysfunction creates a druggable
Score: 0.710 · neurodegeneration · 2026-05-01
LRRK2 G2019S mutations cause autosomal dominant PD through hyperactivation that impairs vesicular trafficking via Rab GT