Entity Detail — Knowledge Graph Node
This page aggregates everything SciDEX knows about SLC6A1: its mechanistic relationships (Knowledge Graph edges), hypotheses targeting it, analyses mentioning it, and supporting scientific papers. The interactive graph below shows its immediate neighbors. All content is AI-synthesized from peer-reviewed literature.
GABA transporter 1 (GAT1) encoding gene critical for inhibitory neurotransmission and implicated in epilepsy, AD, and PD
| Gene Symbol | SLC6A1 |
| Chromosome | 3p25.3 |
| Protein Type | Gene |
| Function | inhibitory neurotransmission and implicated in epilepsy |
| Primary Expression | Brain (neurons and astrocytes), peripheral tissues at low levels |
| Molecular Weight | 67 kDa |
| Amino Acids | 599 aa |
| Exons | 16 |
| UniProt ID | P30531 |
| OMIM | 137165 |
| GeneCards | SLC6A1 |
| Human Protein Atlas | SLC6A1 |
| Genomic Coordinates | chr3:11,000,000-11,200,000 (GRCh38) |
| Gene Length | ~65 kb |
| Number of Exons | 16 coding exons |
| Associated Diseases | Alzheimer |
| Interactions | GJA1, LRRK2, TXN, CALM1, LPL, Rb |
| KG Connections | 36 knowledge graph edges |
| Databases | GeneCardsNCBI GeneHPASTRING |
Knowledge base pages for this entity
flowchart TD
N0["SLC6A1"]
N1["Alzheimer"]
N0 -->|"expressed in"| N1
N2["Diabetes"]
N0 -->|"expressed in"| N2
N3["GJA1"]
N0 -->|"interacts with"| N3
N4["LRRK2"]
N0 -->|"interacts with"| N4
N5["TXN"]
N0 -->|"interacts with"| N5
N6["DIABETES MELLITUS"]
N0 -->|"expressed in"| N6
N7["Synaptic Vesicle"]
N0 -->|"expressed in"| N7
N8["LPL"]
N0 -->|"interacts with"| N8
N9["Rb"]
N0 -->|"interacts with"| N9
N10["ALZHEIMER"]
N10 -->|"expressed in"| N0
N8 -->|"interacts with"| N0
N11["CALM1"]
N11 -->|"interacts with"| N0
N3 -->|"interacts with"| N0
N12["GENES"]
N12 -->|"interacts with"| N0
classDef gene fill:#1a3a2a,stroke:#4caf50,color:#e0e0e0
classDef protein fill:#1a2a3a,stroke:#4fc3f7,color:#e0e0e0
classDef disease fill:#3a1a1a,stroke:#ef5350,color:#e0e0e0
classDef pathway fill:#2a1a3a,stroke:#ce93d8,color:#e0e0e0
classDef mechanism fill:#2a2a1a,stroke:#ffd54f,color:#e0e0e0
class N1 disease
class N2 disease
class N3 gene
class N4 gene
class N5 gene
class N6 gene
class N7 pathway
class N8 gene
class N9 protein
class N10 gene
class N11 gene
class N12 gene| Target | Relation | Type | Str |
|---|---|---|---|
| Alzheimer | expressed_in | disease | 0.65 |
| Diabetes | expressed_in | disease | 0.65 |
| GJA1 | interacts_with | gene | 0.60 |
| LRRK2 | interacts_with | gene | 0.60 |
| TXN | interacts_with | gene | 0.60 |
| Synaptic Vesicle | expressed_in | pathway | 0.60 |
| LPL | interacts_with | gene | 0.60 |
| Rb | interacts_with | protein | 0.60 |
| pericytes | expressed_in | cell_type | 0.60 |
| DIABETES MELLITUS | expressed_in | gene | 0.60 |
| Alzheimer | associated_with | disease | 0.60 |
| endothelial cells | expressed_in | cell_type | 0.60 |
| neurons | expressed_in | cell_type | 0.55 |
| CALM1 | interacts_with | gene | 0.50 |
| TXN | co_expressed_with | gene | 0.50 |
| VWF | co_expressed_with | protein | 0.50 |
| Source | Relation | Type | Str |
|---|---|---|---|
| LPL | interacts_with | gene | 0.60 |
| CALM1 | interacts_with | gene | 0.60 |
| GJA1 | interacts_with | gene | 0.60 |
| LRRK2 | interacts_with | gene | 0.60 |
| TXN | interacts_with | gene | 0.60 |
| ABCB1 | activates | gene | 0.60 |
| COL4A1 | activates | gene | 0.60 |
| PDGFRB | activates | gene | 0.60 |
| ALZHEIMER | expressed_in | gene | 0.60 |
| GENES | interacts_with | gene | 0.60 |
| AND | interacts_with | gene | 0.60 |
| HUB GENES | interacts_with | gene | 0.60 |
| ALZHEIMER'S DISEASE | expressed_in | gene | 0.60 |
| APOD | activates | gene | 0.60 |
| INSR | activates | gene | 0.60 |
| KCNC1 | interacts_with | gene | 0.55 |
| PVALB | interacts_with | gene | 0.55 |
| GABA | interacts_with | gene | 0.55 |
| LPL | co_expressed_with | gene | 0.50 |
| LRRK2 | co_expressed_with | gene | 0.50 |
Hypotheses where this entity is a therapeutic target
| Hypothesis | Score | Disease | Analysis |
|---|---|---|---|
| No targeting hypotheses | |||
Scientific analyses that reference this entity
No analyses mention this entity
Scientific publications cited in analyses involving this entity
| Title & PMID | Authors | Journal | Year | Citations |
|---|---|---|---|---|
| No papers found | ||||