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Proposed experiment from debate on Perivascular spaces and glymphatic clearance failure in AD
active
experiment
Created: 2026-04-02T10:01:41
By: crosslink-v2
Quality:
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ID: experiment-exp-debate-bb0a058a7032
🧫 Experiment Protocol
Falsificationproposed
SUMMARY
# Proposed experiment from debate on Perivascular spaces and glymphatic clearance failure in AD
## Background and Rationale
This experiment investigates the mechanistic relationship between TREK-1 potassium channels and AQP4 polarization in the context of glymphatic clearance dysfunction associated with Alzheimer's disease. TREK-1 channels are mechanosensitive potassium channels expressed in astrocytes that respond to mechanical stimuli and may regulate astrocytic volume and function. The scient
METHODOLOGY NOTES
**Phase 1: Animal Preparation and Baseline Characterization (Days 1-7)**
• Obtain 8-10 week old AQP4-GFP transgenic mice (n=48, equal male/female distribution)
• Perform baseline cognitive assessment using Morris water maze and novel object recognition
• Collect baseline CSF samples via cisterna magna puncture for Aβ40/42 and tau measurements
• Establish baseline glymphatic function using fluorescent tracer injection (Texas Red 3kDa dextran)
• Randomize animals into treatment groups: vehicle control (n=12), TREK-1 agonist ML335 (10mg/kg, n=12), TREK-1 antagonist spadin (5mg/kg, n=12), AD model + ML335 (n=12)
**Phase 2: Real-time AQP4 Polarization Imaging (Days 8-14)**
• Prepare acute brain slices (300μm thickness) from cortex and hippocampus
• Mount slices in perfusion chamber with oxygenated aCSF at 32°C
• Apply TREK-1 modulators via perfusion system (ML335 100nM, spadin 1μM)
• Perform two-photon microscopy imaging of AQP4-GFP at perivascular endfeet
• Quantify AQP4 polarization inde
▸Metadatasource: {'type': 'manual', 'source_name': 'debat
| source | {'type': 'manual', 'source_name': 'debate_extraction', 'extracted_by': 'backfill_v1', 'extraction_date': '2026-04-16T01:00:16.909563Z'} |
| summary | # Proposed experiment from debate on Perivascular spaces and glymphatic clearance failure in AD ## Background and Rationale This experiment investigates the mechanistic relationship between TREK-1 pot |
| entities | {'genes': ['TREK'], 'diseases': ['Neurodegeneration']} |
| model_system | mouse |
| _schema_version | 1 |
| experiment_type | falsification |
| primary_outcome | Real-time measurement of AQP4-GFP polarization changes at astrocytic endfeet following selective TREK-1 channel activation, correlated with patch-clamp recordings of membrane conductance. |
| methodology_notes | **Phase 1: Animal Preparation and Baseline Characterization (Days 1-7)** • Obtain 8-10 week old AQP4-GFP transgenic mice (n=48, equal male/female distribution) • Perform baseline cognitive assessment |
| replication_status | single_study |
| extraction_metadata | {'backfill_at': '2026-04-16T01:00:16.909569', 'needs_review': True, 'extraction_notes': 'Backfilled from debate_extraction source (no PMID available)', 'extraction_confidence': 0.4} |
📊 Evidence Profile
Foundational
Evidence Balance
+0%
Certainty
100%
Debates
0
Incoming
1281
Outgoing
1229
0 supporting
0 contradicting
0 neutral
🌍 Provenance Graph
58 nodes, 154 edges
derives from (15)
experiment-exp-debate-bb0a058a→hypothesis-h-9eae33bahypothesis-h-9eae33ba→analysis-SDA-2026-04-01-gap-v2analysis-SDA-2026-04-01-gap-v2→hypothesis-h-9eae33baexperiment-exp-debate-bb0a058a→hypothesis-h-c8ccbee8hypothesis-h-c8ccbee8→analysis-SDA-2026-04-01-gap-00
▸ Show 10 more
analysis-SDA-2026-04-01-gap-00→hypothesis-h-c8ccbee8experiment-exp-debate-bb0a058a→hypothesis-h-807d7a82hypothesis-h-807d7a82→analysis-SDA-2026-04-01-gap-01analysis-SDA-2026-04-01-gap-01→hypothesis-h-807d7a82experiment-exp-debate-bb0a058a→hypothesis-h-db6aa4b1hypothesis-h-db6aa4b1→analysis-SDA-2026-04-01-gap-00analysis-SDA-2026-04-01-gap-00→hypothesis-h-db6aa4b1experiment-exp-debate-bb0a058a→hypothesis-h-725c62e9hypothesis-h-725c62e9→analysis-SDA-2026-04-01-gap-00analysis-SDA-2026-04-01-gap-00→hypothesis-h-725c62e9
supports (98)
hypothesis-h-c8ccbee8→paper-41921124paper-41921124→hypothesis-h-c8ccbee8hypothesis-h-c8ccbee8→paper-41916121paper-41916121→hypothesis-h-c8ccbee8hypothesis-h-c8ccbee8→paper-41915816
▸ Show 93 more
paper-41915816→hypothesis-h-c8ccbee8hypothesis-h-c8ccbee8→paper-41915271paper-41915271→hypothesis-h-c8ccbee8hypothesis-h-c8ccbee8→paper-41909718paper-41909718→hypothesis-h-c8ccbee8hypothesis-h-c8ccbee8→paper-41665955paper-41665955→hypothesis-h-c8ccbee8hypothesis-h-c8ccbee8→paper-41535708paper-41535708→hypothesis-h-c8ccbee8hypothesis-h-c8ccbee8→paper-41782198paper-41782198→hypothesis-h-c8ccbee8hypothesis-h-c8ccbee8→paper-41927387paper-41927387→hypothesis-h-c8ccbee8hypothesis-h-c8ccbee8→paper-41650822paper-41650822→hypothesis-h-c8ccbee8hypothesis-h-c8ccbee8→paper-41933462paper-41933462→hypothesis-h-c8ccbee8hypothesis-h-c8ccbee8→paper-41957344paper-41957344→hypothesis-h-c8ccbee8hypothesis-h-c8ccbee8→paper-41956817paper-41956817→hypothesis-h-c8ccbee8hypothesis-h-c8ccbee8→paper-41957957paper-41957957→hypothesis-h-c8ccbee8hypothesis-h-807d7a82→wiki-convergence-synthesis-asthypothesis-h-db6aa4b1→paper-40950697paper-40950697→hypothesis-h-db6aa4b1hypothesis-h-db6aa4b1→paper-39789885paper-39789885→hypothesis-h-db6aa4b1hypothesis-h-db6aa4b1→paper-41268978paper-41268978→hypothesis-h-db6aa4b1hypothesis-h-db6aa4b1→paper-40894745paper-40894745→hypothesis-h-db6aa4b1hypothesis-h-db6aa4b1→paper-41195420paper-41195420→hypothesis-h-db6aa4b1hypothesis-h-db6aa4b1→paper-41051683paper-41051683→hypothesis-h-db6aa4b1hypothesis-h-db6aa4b1→paper-31596529paper-31596529→hypothesis-h-db6aa4b1hypothesis-h-db6aa4b1→paper-39722451paper-39722451→hypothesis-h-db6aa4b1hypothesis-h-db6aa4b1→paper-37532007paper-37532007→hypothesis-h-db6aa4b1hypothesis-h-db6aa4b1→paper-39375369paper-39375369→hypothesis-h-db6aa4b1hypothesis-h-db6aa4b1→paper-40009679paper-40009679→hypothesis-h-db6aa4b1hypothesis-h-db6aa4b1→paper-39824919paper-39824919→hypothesis-h-db6aa4b1hypothesis-h-725c62e9→paper-31519892paper-31519892→hypothesis-h-725c62e9hypothesis-h-725c62e9→paper-34156973paper-34156973→hypothesis-h-725c62e9hypothesis-h-725c62e9→paper-32661379paper-32661379→hypothesis-h-725c62e9hypothesis-h-725c62e9→paper-30171180paper-30171180→hypothesis-h-725c62e9hypothesis-h-725c62e9→paper-16794040paper-16794040→hypothesis-h-725c62e9hypothesis-h-725c62e9→paper-33239784paper-33239784→hypothesis-h-725c62e9hypothesis-h-725c62e9→paper-38838160paper-38838160→hypothesis-h-725c62e9hypothesis-h-725c62e9→paper-35331296paper-35331296→hypothesis-h-725c62e9hypothesis-h-725c62e9→paper-34059671paper-34059671→hypothesis-h-725c62e9hypothesis-h-725c62e9→paper-36181398paper-36181398→hypothesis-h-725c62e9hypothesis-h-725c62e9→paper-38744281paper-38744281→hypothesis-h-725c62e9hypothesis-h-725c62e9→paper-40653265paper-40653265→hypothesis-h-725c62e9hypothesis-h-725c62e9→paper-41486513paper-41486513→hypothesis-h-725c62e9hypothesis-h-725c62e9→paper-41175920paper-41175920→hypothesis-h-725c62e9hypothesis-h-725c62e9→paper-41555045paper-41555045→hypothesis-h-725c62e9hypothesis-h-725c62e9→paper-41544798paper-41544798→hypothesis-h-725c62e9hypothesis-h-725c62e9→paper-41930354paper-41930354→hypothesis-h-725c62e9hypothesis-h-725c62e9→paper-41933910paper-41933910→hypothesis-h-725c62e9hypothesis-h-725c62e9→paper-41949555paper-41949555→hypothesis-h-725c62e9hypothesis-h-725c62e9→paper-41964669paper-41964669→hypothesis-h-725c62e9experiment-exp-debate-bb0a058a→hypothesis-h-9eae33baexperiment-exp-debate-bb0a058a→hypothesis-h-c8ccbee8experiment-exp-debate-bb0a058a→hypothesis-h-807d7a82experiment-exp-debate-bb0a058a→hypothesis-h-db6aa4b1experiment-exp-debate-bb0a058a→hypothesis-h-725c62e9
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