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🧫
s:** - Compare tau strain spreading in EXT1/EXT2 conditional knockout mice - Test whether HSPG-deficient astrocytes still form tufts vs plaques when e
active
experiment
Created: 2026-04-02T10:01:41
By: crosslink-v2
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ID: experiment-exp-debate-ca942ead922d
🧫 Experiment Protocol
Falsificationproposed
SUMMARY
# s:**
- Compare tau strain spreading in EXT1/EXT2 conditional knockout mice
- Test whether HSPG-deficient astrocytes still form tufts vs plaques when e
## Background and Rationale
This experiment investigates the role of heparan sulfate proteoglycans (HSPGs) in tau strain propagation by examining conditional knockout mice lacking EXT1/EXT2, enzymes essential for HSPG synthesis. The scientific rationale stems from growing evidence that HSPGs serve as cofactors for tau seeding and spreading betwe
METHODOLOGY NOTES
**Phase 1: Animal Preparation and Genotyping (Weeks 1-2)**
• Generate EXT1/EXT2 floxed mice crossed with GFAP-Cre or Aldh1l1-Cre lines for astrocyte-specific conditional knockout (n=60 total)
• Genotype all animals using PCR with primers for floxed alleles and Cre recombinase
• Randomly assign to groups: Control (Cre-negative, n=15), EXT1 cKO (n=15), EXT2 cKO (n=15), EXT1/EXT2 double cKO (n=15)
• Age mice to 8-10 weeks for baseline mature astrocyte populations
**Phase 2: Tau Strain Preparation and Stereotactic Injection (Week 3)**
• Prepare recombinant PSP-tau and CBD-tau fibrils at 2 μg/μL concentration
• Perform stereotactic injection into hippocampus (AP: -2.0mm, ML: ±1.5mm, DV: -1.8mm)
• Inject 2 μL of tau fibrils unilaterally, contralateral hemisphere receives vehicle control
• Post-surgical monitoring for 7 days with analgesics as needed
**Phase 3: Pharmacological HSPG Degradation Treatment (Weeks 4-8)**
• Administer heparinase III (10 U/kg) via intracerebroventricular injectio
▸Metadatasource: {'type': 'manual', 'source_name': 'debat
| source | {'type': 'manual', 'source_name': 'debate_extraction', 'extracted_by': 'backfill_v1', 'extraction_date': '2026-04-16T01:00:16.909390Z'} |
| summary | # s:** - Compare tau strain spreading in EXT1/EXT2 conditional knockout mice - Test whether HSPG-deficient astrocytes still form tufts vs plaques when e ## Background and Rationale This experiment inv |
| entities | {'genes': ['EXT1'], 'diseases': ['Neurodegeneration']} |
| model_system | mouse |
| _schema_version | 1 |
| experiment_type | falsification |
| primary_outcome | Comparative analysis of tau pathology spreading patterns and morphological characteristics (tufts vs plaques) in EXT1/EXT2 conditional knockout versus control mice at 3 and 6 months post-injection. |
| methodology_notes | **Phase 1: Animal Preparation and Genotyping (Weeks 1-2)** • Generate EXT1/EXT2 floxed mice crossed with GFAP-Cre or Aldh1l1-Cre lines for astrocyte-specific conditional knockout (n=60 total) • Genoty |
| replication_status | single_study |
| extraction_metadata | {'backfill_at': '2026-04-16T01:00:16.909395', 'needs_review': True, 'extraction_notes': 'Backfilled from debate_extraction source (no PMID available)', 'extraction_confidence': 0.4} |
📊 Evidence Profile
Foundational
Evidence Balance
+0%
Certainty
100%
Debates
0
Incoming
1419
Outgoing
1338
0 supporting
0 contradicting
0 neutral
🌍 Provenance Graph
8 nodes, 29 edges
derives from (15)
experiment-exp-debate-ca942ead→hypothesis-h-4dd0d19bhypothesis-h-4dd0d19b→analysis-SDA-2026-04-02-gap-taanalysis-SDA-2026-04-02-gap-ta→hypothesis-h-4dd0d19banalysis-SDA-2026-04-02-gap-ta→hypothesis-h-b234254canalysis-SDA-2026-04-02-gap-ta→hypothesis-h-0f00fd75
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analysis-SDA-2026-04-02-gap-ta→hypothesis-h-73e29e3aexperiment-exp-debate-ca942ead→hypothesis-h-b234254chypothesis-h-b234254c→analysis-SDA-2026-04-02-gap-taexperiment-exp-debate-ca942ead→hypothesis-h-4113b0e8hypothesis-h-4113b0e8→analysis-SDA-2026-04-01-gap-v2analysis-SDA-2026-04-01-gap-v2→hypothesis-h-4113b0e8experiment-exp-debate-ca942ead→hypothesis-h-0f00fd75hypothesis-h-0f00fd75→analysis-SDA-2026-04-02-gap-taexperiment-exp-debate-ca942ead→hypothesis-h-73e29e3ahypothesis-h-73e29e3a→analysis-SDA-2026-04-02-gap-ta
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