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🧫
s:** - Test tau spreading in AQP4 knockout vs wild-type mice with PSP/CBD strains - Rescue AQP4 polarization pharmacologically and measure tau patholo
active
experiment
Created: 2026-04-02T10:01:41
By: crosslink-v2
Quality:
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ID: experiment-exp-debate-c69b54839399
🧫 Experiment Protocol
Falsificationproposed
SUMMARY
# s:**
- Test tau spreading in AQP4 knockout vs wild-type mice with PSP/CBD strains
- Rescue AQP4 polarization pharmacologically and measure tau patholo
## Background and Rationale
This experiment examines the role of aquaporin-4 (AQP4) polarization in tau pathology spreading by comparing AQP4 knockout mice with wild-type controls using PSP and CBD tau strains. AQP4 is the predominant water channel in astrocytes and plays a crucial role in glymphatic clearance, with its polarization to astrocyti
METHODOLOGY NOTES
**Phase 1: Animal Preparation and Genotyping (Weeks 1-2)**
• Breed AQP4 knockout (AQP4-/-) and wild-type (AQP4+/+) C57BL/6J mice to generate 60 mice per genotype (120 total)
• Perform genotyping via PCR using primers specific for AQP4 deletion cassette
• Age mice to 8-10 weeks and perform baseline behavioral assessment using rotarod and open field tests
• Randomize mice into treatment groups: Vehicle control, PSP tau, CBD tau, PSP tau + AQP4 modulator, CBD tau + AQP4 modulator (n=12 per group per genotype)
**Phase 2: Tau Strain Preparation and Characterization (Week 3)**
• Prepare recombinant PSP-derived 4R tau fibrils and CBD-derived mixed 3R/4R tau fibrils using established seeding protocols
• Characterize tau strains via thioflavin T binding, electron microscopy, and Western blot for conformational specificity
• Sonicate fibrils to 100-200nm fragments and quantify by Bradford assay (target: 2μg/μL)
• Validate seeding capacity using HEK293T biosensor cells expressing tau-CFP/YFP FRE
▸Metadatasource: {'type': 'manual', 'source_name': 'debat
| source | {'type': 'manual', 'source_name': 'debate_extraction', 'extracted_by': 'backfill_v1', 'extraction_date': '2026-04-16T01:00:16.909468Z'} |
| summary | # s:** - Test tau spreading in AQP4 knockout vs wild-type mice with PSP/CBD strains - Rescue AQP4 polarization pharmacologically and measure tau patholo ## Background and Rationale This experiment exa |
| entities | {'genes': ['AQP4'], 'diseases': ['Neurodegeneration']} |
| model_system | mouse |
| _schema_version | 1 |
| experiment_type | falsification |
| primary_outcome | Quantitative comparison of tau pathology burden and spreading velocity between AQP4 knockout and wild-type mice, with assessment of rescue efficacy following pharmacological AQP4 polarization restorat |
| methodology_notes | **Phase 1: Animal Preparation and Genotyping (Weeks 1-2)** • Breed AQP4 knockout (AQP4-/-) and wild-type (AQP4+/+) C57BL/6J mice to generate 60 mice per genotype (120 total) • Perform genotyping via P |
| replication_status | single_study |
| extraction_metadata | {'backfill_at': '2026-04-16T01:00:16.909473', 'needs_review': True, 'extraction_notes': 'Backfilled from debate_extraction source (no PMID available)', 'extraction_confidence': 0.4} |
📊 Evidence Profile
Foundational
Evidence Balance
+0%
Certainty
100%
Debates
0
Incoming
1356
Outgoing
1314
0 supporting
0 contradicting
0 neutral
🌍 Provenance Graph
36 nodes, 115 edges
derives from (15)
experiment-exp-debate-c69b5483→hypothesis-h-807d7a82hypothesis-h-807d7a82→analysis-SDA-2026-04-01-gap-01analysis-SDA-2026-04-01-gap-01→hypothesis-h-807d7a82experiment-exp-debate-c69b5483→hypothesis-h-c8ccbee8hypothesis-h-c8ccbee8→analysis-SDA-2026-04-01-gap-00
▸ Show 10 more
analysis-SDA-2026-04-01-gap-00→hypothesis-h-c8ccbee8experiment-exp-debate-c69b5483→hypothesis-h-62e56eb9hypothesis-h-62e56eb9→analysis-SDA-2026-04-01-gap-00analysis-SDA-2026-04-01-gap-00→hypothesis-h-62e56eb9experiment-exp-debate-c69b5483→hypothesis-h-9e9fee95hypothesis-h-9e9fee95→analysis-SDA-2026-04-01-gap-v2analysis-SDA-2026-04-01-gap-v2→hypothesis-h-9e9fee95analysis-SDA-2026-04-01-gap-v2→hypothesis-h-9eae33baexperiment-exp-debate-c69b5483→hypothesis-h-9eae33bahypothesis-h-9eae33ba→analysis-SDA-2026-04-01-gap-v2
supports (77)
hypothesis-h-807d7a82→wiki-convergence-synthesis-asthypothesis-h-c8ccbee8→paper-41921124paper-41921124→hypothesis-h-c8ccbee8paper-41921124→hypothesis-h-62e56eb9hypothesis-h-c8ccbee8→paper-41916121
▸ Show 72 more
paper-41916121→hypothesis-h-c8ccbee8hypothesis-h-c8ccbee8→paper-41915816paper-41915816→hypothesis-h-c8ccbee8paper-41915816→hypothesis-h-62e56eb9hypothesis-h-c8ccbee8→paper-41915271paper-41915271→hypothesis-h-c8ccbee8hypothesis-h-c8ccbee8→paper-41909718paper-41909718→hypothesis-h-c8ccbee8hypothesis-h-c8ccbee8→paper-41665955paper-41665955→hypothesis-h-c8ccbee8paper-41665955→hypothesis-h-62e56eb9hypothesis-h-c8ccbee8→paper-41535708paper-41535708→hypothesis-h-c8ccbee8paper-41535708→hypothesis-h-62e56eb9hypothesis-h-c8ccbee8→paper-41782198paper-41782198→hypothesis-h-c8ccbee8paper-41782198→hypothesis-h-62e56eb9hypothesis-h-c8ccbee8→paper-41927387paper-41927387→hypothesis-h-c8ccbee8paper-41927387→hypothesis-h-62e56eb9hypothesis-h-c8ccbee8→paper-41650822paper-41650822→hypothesis-h-c8ccbee8paper-41650822→hypothesis-h-62e56eb9hypothesis-h-c8ccbee8→paper-41933462paper-41933462→hypothesis-h-c8ccbee8hypothesis-h-c8ccbee8→paper-41957344paper-41957344→hypothesis-h-c8ccbee8paper-41957344→hypothesis-h-62e56eb9hypothesis-h-c8ccbee8→paper-41956817paper-41956817→hypothesis-h-c8ccbee8paper-41956817→hypothesis-h-62e56eb9hypothesis-h-c8ccbee8→paper-41957957paper-41957957→hypothesis-h-c8ccbee8paper-41957957→hypothesis-h-62e56eb9hypothesis-h-62e56eb9→paper-23378588paper-23378588→hypothesis-h-62e56eb9hypothesis-h-62e56eb9→paper-25339855paper-25339855→hypothesis-h-62e56eb9hypothesis-h-62e56eb9→paper-24760811paper-24760811→hypothesis-h-62e56eb9hypothesis-h-62e56eb9→paper-41921124hypothesis-h-62e56eb9→paper-41915816hypothesis-h-62e56eb9→paper-41881459paper-41881459→hypothesis-h-62e56eb9hypothesis-h-62e56eb9→paper-41856031paper-41856031→hypothesis-h-62e56eb9hypothesis-h-62e56eb9→paper-41843863paper-41843863→hypothesis-h-62e56eb9hypothesis-h-62e56eb9→paper-41579208paper-41579208→hypothesis-h-62e56eb9hypothesis-h-62e56eb9→paper-41803833paper-41803833→hypothesis-h-62e56eb9hypothesis-h-62e56eb9→paper-41650822hypothesis-h-62e56eb9→paper-41841574paper-41841574→hypothesis-h-62e56eb9hypothesis-h-62e56eb9→paper-41535708hypothesis-h-62e56eb9→paper-41665955hypothesis-h-62e56eb9→paper-41927387hypothesis-h-62e56eb9→paper-41927386paper-41927386→hypothesis-h-62e56eb9hypothesis-h-62e56eb9→paper-41539459paper-41539459→hypothesis-h-62e56eb9hypothesis-h-62e56eb9→paper-41782198hypothesis-h-62e56eb9→paper-41957344hypothesis-h-62e56eb9→paper-41956817hypothesis-h-62e56eb9→paper-41957957hypothesis-h-9e9fee95→wiki-convergence-synthesis-astexperiment-exp-debate-c69b5483→hypothesis-h-807d7a82experiment-exp-debate-c69b5483→hypothesis-h-c8ccbee8experiment-exp-debate-c69b5483→hypothesis-h-62e56eb9experiment-exp-debate-c69b5483→hypothesis-h-9e9fee95experiment-exp-debate-c69b5483→hypothesis-h-9eae33ba
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