gene

SYNPO

Entity Detail — Knowledge Graph Node

Understanding Entity Pages

This page aggregates everything SciDEX knows about SYNPO: its mechanistic relationships (Knowledge Graph edges), hypotheses targeting it, analyses mentioning it, and supporting scientific papers. The interactive graph below shows its immediate neighbors. All content is AI-synthesized from peer-reviewed literature.

41Connections
0Hypotheses
0Analyses
25Outgoing
16Incoming

Summary

SYNPO encodes synaptopodin, an actin-associated protein essential for spine apparatus formation, synaptic plasticity, and memory. Dysregulated in Alzheimer's disease and schizophrenia.

View on Wiki →

🧬 Gene Info
Gene SymbolSYNPO
Full NameSynaptopodin
Chromosome5q33.1
Functionencodes a unique actin-associated protein that plays essential roles in both the kidney and the brain.
Subcellular LocalizationProtein-protein interactions
Molecular Weight~100 kDa
Amino Acids007 aa
Exons24
Pathwaysepigenetic regulation, neurotrophin signaling
UniProt IDQ9Y7X6
NCBI Gene ID11345
Ensembl IDENSG00000172459
OMIM608005
GeneCardsSYNPO
Human Protein AtlasSYNPO
Associated DiseasesALS, Alzheimer, dementia, frontotemporal, neurodegeneration
InteractionsXRCC1, Actin, BDNF, CAMK2A, NGF, PARP1
KG Connections41 knowledge graph edges
DatabasesGeneCardsHPASTRING
🔮 Predicted Structure: SYNPO — AlphaFold Q9Y7X6 Click to expand

AI-predicted structure from AlphaFold | Powered by Mol*

Wiki Pages (7)

Knowledge base pages for this entity

Canonical Page

SYNPO Gene

gene · 1169 words

TUBB2B — Tubulin Beta 2B Class IIb

gene · 2334 words

LRFN1 — Leucine Rich Repeat and Fibronectin Type III Domain Containing 1

gene · 2282 words

SYNPO2 — Synaptopodin 2

gene · 1068 words

synpo-protein

protein · 595 words

Proteins

index · 296 words

Pathway Diagram

graph TD
    SYNPO["<b>SYNPO</b>"]
    Als{"Als"}
    SYNPO -->|"interacts with"| Als
    ALS{"ALS"}
    SYNPO -->|"interacts with"| ALS
    Dendritic_Spine(["Dendritic Spine"])
    SYNPO -->|"associated with"| Dendritic_Spine
    Neuron["Neuron"]
    SYNPO -->|"expressed in"| Neuron
    neurodegeneration["neurodegeneration"]
    SYNPO -->|"implicated in"| neurodegeneration
    AND["AND"]
    AND -->|"associated with"| SYNPO
    style SYNPO fill:#1a3a4a,stroke:#4fc3f7,stroke-width:3px,color:#e0e0e0

Outgoing (25)

TargetRelationTypeStr
Synaptic Plasticityinvolved_inprocess0.90
Synaptic plasticityinvolved_inprocess0.82
Alsinteracts_withdisease0.65
ALSinteracts_withdisease0.65
Dendritic Spineassociated_withpathway0.60

Incoming (16)

SourceRelationTypeStr
CADM1implicated_ingene0.60
COMTimplicated_ingene0.60
ITPKAimplicated_ingene0.60
LRFN1implicated_ingene0.60
NCANimplicated_ingene0.60

Targeting Hypotheses (0)

Hypotheses where this entity is a therapeutic target

HypothesisScoreDiseaseAnalysis
No targeting hypotheses

Mentioning Analyses (0)

Scientific analyses that reference this entity

No analyses mention this entity

Related Papers (0)

Scientific publications cited in analyses involving this entity

Title & PMIDAuthorsJournalYearCitations
No papers found