Entity Detail — Knowledge Graph Node
This page aggregates everything SciDEX knows about SYNPO: its mechanistic relationships (Knowledge Graph edges), hypotheses targeting it, analyses mentioning it, and supporting scientific papers. The interactive graph below shows its immediate neighbors. All content is AI-synthesized from peer-reviewed literature.
SYNPO encodes synaptopodin, an actin-associated protein essential for spine apparatus formation, synaptic plasticity, and memory. Dysregulated in Alzheimer's disease and schizophrenia.
| Gene Symbol | SYNPO |
| Full Name | Synaptopodin |
| Chromosome | 5q33.1 |
| Function | encodes a unique actin-associated protein that plays essential roles in both the kidney and the brain. |
| Subcellular Localization | Protein-protein interactions |
| Molecular Weight | ~100 kDa |
| Amino Acids | 007 aa |
| Exons | 24 |
| Pathways | epigenetic regulation, neurotrophin signaling |
| UniProt ID | Q9Y7X6 |
| NCBI Gene ID | 11345 |
| Ensembl ID | ENSG00000172459 |
| OMIM | 608005 |
| GeneCards | SYNPO |
| Human Protein Atlas | SYNPO |
| Associated Diseases | ALS, Alzheimer, dementia, frontotemporal, neurodegeneration |
| Interactions | XRCC1, Actin, BDNF, CAMK2A, NGF, PARP1 |
| KG Connections | 41 knowledge graph edges |
| Databases | GeneCardsHPASTRING |
Knowledge base pages for this entity
graph TD
SYNPO["<b>SYNPO</b>"]
Als{"Als"}
SYNPO -->|"interacts with"| Als
ALS{"ALS"}
SYNPO -->|"interacts with"| ALS
Dendritic_Spine(["Dendritic Spine"])
SYNPO -->|"associated with"| Dendritic_Spine
Neuron["Neuron"]
SYNPO -->|"expressed in"| Neuron
neurodegeneration["neurodegeneration"]
SYNPO -->|"implicated in"| neurodegeneration
AND["AND"]
AND -->|"associated with"| SYNPO
style SYNPO fill:#1a3a4a,stroke:#4fc3f7,stroke-width:3px,color:#e0e0e0| Target | Relation | Type | Str |
|---|---|---|---|
| Synaptic Plasticity | involved_in | process | 0.90 |
| Synaptic plasticity | involved_in | process | 0.82 |
| Als | interacts_with | disease | 0.65 |
| ALS | interacts_with | disease | 0.65 |
| Dendritic Spine | associated_with | pathway | 0.60 |
| neurodegeneration | associated_with | disease | 0.60 |
| frontotemporal | associated_with | disease | 0.60 |
| TUBB2B | implicated_in | gene | 0.60 |
| AND | associated_with | gene | 0.60 |
| Neuron | interacts_with | cell_type | 0.60 |
| Actin | interacts_with | protein | 0.60 |
| App | associated_with | protein | 0.60 |
| neurons | expressed_in | cell_type | 0.60 |
| dementia | associated_with | disease | 0.60 |
| Alzheimer | associated_with | disease | 0.60 |
| ALS | associated_with | disease | 0.60 |
| synaptic plasticity | participates_in | pathway | 0.60 |
| XRCC1 | activates | gene | 0.55 |
| neurotrophin signaling | participates_in | pathway | 0.55 |
| Neuron | expressed_in | cell_type | 0.55 |
| epigenetic regulation | participates_in | pathway | 0.55 |
| TARDBP | co_expressed_with | gene | 0.50 |
| TUBB2B | co_expressed_with | gene | 0.50 |
| DENDRITIC SPINE | interacts_with | concept | 0.50 |
| NEURONS | interacts_with | concept | 0.50 |
| Source | Relation | Type | Str |
|---|---|---|---|
| CADM1 | implicated_in | gene | 0.60 |
| COMT | implicated_in | gene | 0.60 |
| ITPKA | implicated_in | gene | 0.60 |
| LRFN1 | implicated_in | gene | 0.60 |
| NCAN | implicated_in | gene | 0.60 |
| RAB3B | implicated_in | gene | 0.60 |
| SLC1A2 | implicated_in | gene | 0.60 |
| FTLD | implicated_in | gene | 0.60 |
| RNA | implicated_in | gene | 0.60 |
| BDNF | activates | gene | 0.55 |
| CAMK2A | activates | gene | 0.55 |
| NGF | activates | gene | 0.55 |
| PARP1 | activates | gene | 0.55 |
| DNA | activates | gene | 0.55 |
| RAB3B | co_expressed_with | gene | 0.50 |
| SLC1A2 | co_expressed_with | gene | 0.50 |
Hypotheses where this entity is a therapeutic target
| Hypothesis | Score | Disease | Analysis |
|---|---|---|---|
| No targeting hypotheses | |||
Scientific analyses that reference this entity
No analyses mention this entity
Scientific publications cited in analyses involving this entity
| Title & PMID | Authors | Journal | Year | Citations |
|---|---|---|---|---|
| No papers found | ||||