Entity Detail — Knowledge Graph Node
This page aggregates everything SciDEX knows about BIN1: its mechanistic relationships (Knowledge Graph edges), hypotheses targeting it, analyses mentioning it, and supporting scientific papers. The interactive graph below shows its immediate neighbors. All content is AI-synthesized from peer-reviewed literature.
Bridging Integrator 1 (BIN1) is the second strongest genetic risk factor for late-onset Alzheimer's disease after APOE4. BIN1 encodes a BAR domain protein involved in membrane dynamics, endocytosis, and cytoskeletal regulation. In neurons, BIN1 modulates tau propagation by regulating endosomal trafficking and tau release via extracellular vesicles. BIN1 also interacts with clathrin and AP-2 to control synaptic vesicle recycling. AD-associated BIN1 variants increase tau pathology spreading and reduce synaptic function. BIN1 is expressed in both neurons and oligodendrocytes, with cell-type-specific roles in disease. BIN1 represents a promising therapeutic target for slowing tau propagation.
| Gene Symbol | BIN1 |
| Full Name | Bridging Integrator 1 (Amphiphysin 2) |
| Chromosome | 2q14.3 |
| Function | is a gene located on chromosome 2q14. |
| Primary Expression | Cerebral cortex, Hippocampus, White matter, Cerebellum |
| Molecular Weight | 70 kDa |
| Exons | 20 |
| Pathways | Autophagy, Complement, Endocytosis, proinflammatory activation |
| UniProt ID | O00499 |
| NCBI Gene ID | 274 |
| Ensembl ID | ENSG00000136717 |
| OMIM | 601248 |
| GeneCards | BIN1 |
| Human Protein Atlas | BIN1 |
| Associated Diseases | ALS, ALZHEIMER, ALZHEIMER'S DISEASE |
| Interactions | G3BP1, CLU, CLUSTERIN, APOE, CD33, LRP1 |
| KG Connections | 926 knowledge graph edges |
| Databases | GeneCardsHPASTRING |
Knowledge base pages for this entity
graph TD
BIN1["BIN1"]
BIN1 -->|"regulates"| phosphorylated_tau["phosphorylated tau"]
BIN1 -->|"expressed in"| Cancer["Cancer"]
BIN1 -->|"expressed in"| Tumor["Tumor"]
BIN1 -->|"expressed in"| Alzheimer["Alzheimer"]
BIN1 -->|"activates"| Als["Als"]
BIN1 -->|"expressed in"| Senescence["Senescence"]
BIN1 -->|"expressed in"| Ms["Ms"]
BIN1 -->|"activates"| Inflammation["Inflammation"]
BIN1 -->|"activates"| Neurodegeneration["Neurodegeneration"]
CD8["CD8"] -->|"expressed in"| BIN1
STAT1["STAT1"] -->|"activates"| BIN1| Target | Relation | Type | Str |
|---|---|---|---|
| ds-f50762b67605 | provides_data_for | dataset | 1.00 |
| ds-83b31ef18d49 | provides_data_for | dataset | 1.00 |
| ds-db4a006ea647 | provides_data_for | dataset | 1.00 |
| Proinflammatory Activation | regulates | process | 0.95 |
| Neurodegeneration-Related Activation | regulates | process | 0.95 |
| Late-Onset Alzheimer's Disease | risk_factor_for | disease | 0.95 |
| Late-Onset Alzheimer'S Disease | risk_factor_for | disease | 0.95 |
| Sporadic Alzheimer's Disease | downregulates | disease | 0.95 |
| Alzheimer's Disease | associated_with | disease | 0.95 |
| Alzheimer's disease | risk_factor_for | disease | 0.95 |
| Alzheimer's Disease | risk_factor_for | disease | 0.95 |
| Alzheimer'S Disease | risk_factor_for | disease | 0.95 |
| Alternate Splicing | involved_in | process | 0.90 |
| endolysosomal trafficking | mediates | pathway | 0.90 |
| tau tangles | associated_with | biomarker | 0.90 |
| trafficking | regulates | process | 0.90 |
| Tau Pathology Propagation | inhibits | process | 0.90 |
| cellular clearance | mediates | process | 0.90 |
| Endolysosomal Dysfunction | associated_with | mechanism | 0.90 |
| Amyloid-Beta Processing | regulates | mechanism | 0.90 |
| Cellular Clearance Mechanisms | regulates | process | 0.90 |
| AUTOPHAGY | mediates | process | 0.90 |
| tau pathology | associated_with | phenotype | 0.88 |
| Amyloid-Beta Plaques | associated_with | biomarker | 0.88 |
| Tau Tangles | associated_with | biomarker | 0.88 |
| Membrane Dynamics | regulates | process | 0.85 |
| Ptau | associated_with | biomarker | 0.85 |
| amyloid-beta plaques | involved_in | biomarker | 0.85 |
| tau pathology | exacerbates | phenotype | 0.85 |
| cellular clearance | modulates | process | 0.85 |
| cytoskeletal dynamics | regulates | process | 0.85 |
| synaptic function | regulates | process | 0.85 |
| TAU | binds | protein | 0.85 |
| Tau Pathology | modulates | process | 0.85 |
| Endocytic Flux | inhibits | process | 0.85 |
| autophagy | regulates | process | 0.85 |
| Endocytosis | involved_in | process | 0.85 |
| Synaptic Transmission | modulates | process | 0.85 |
| CR1 | associated_with | gene | 0.82 |
| Neurons | expressed_in | cell_type | 0.80 |
| Oligodendrocytes | expressed_in | cell_type | 0.80 |
| BDNF/TrkB signaling | inhibits | pathway | 0.80 |
| amyloid-beta processing | modulates | process | 0.80 |
| Extracellular Tau Seed Uptake | inhibits | process | 0.80 |
| Frontal Cortex | expressed_in | cell_type | 0.80 |
| cellular homeostasis | associated_with | process | 0.80 |
| oligodendrocytes | expressed_in | cell_type | 0.80 |
| oxidative stress response | participates_in | pathway | 0.80 |
| synaptic transmission | associated_with | process | 0.75 |
| Exosome Release | associated_with | process | 0.75 |
| Source | Relation | Type | Str |
|---|---|---|---|
| ALZHEIMER'S DISEASE | associated_with | gene | 1.00 |
| ds-f50762b67605 | data_in | dataset | 1.00 |
| ds-83b31ef18d49 | data_in | dataset | 1.00 |
| ds-db4a006ea647 | data_in | dataset | 1.00 |
| APOE | associated_with | gene | 0.98 |
| AMYLOID | associated_with | gene | 0.90 |
| Tau fragment N368 | interacts_with | protein | 0.80 |
| AMPH1 | interacts_with | protein | 0.80 |
| ARRB2 | causes | gene | 0.70 |
| HIF1A | regulates | gene | 0.65 |
| HIF1A | degrades | gene | 0.65 |
| NEURODEGENERATION | inhibits | disease | 0.65 |
| NEUROINFLAMMATION | produces | phenotype | 0.65 |
| CD8 | expressed_in | gene | 0.60 |
| STAT1 | activates | gene | 0.60 |
| EPAS1 | associated_with | gene | 0.60 |
| CACNG6 | associated_with | gene | 0.60 |
| CX3CR1 | regulates | gene | 0.60 |
| SORL1 | associated_with | gene | 0.60 |
| PLD3 | associated_with | gene | 0.60 |
| ABCA1 | associated_with | entity | 0.60 |
| ABI3 | associated_with | entity | 0.60 |
| ADAM17 | associated_with | entity | 0.60 |
| PICALM | associated_with | gene | 0.60 |
| CR1 | associated_with | gene | 0.60 |
| TREM2 | associated_with | gene | 0.60 |
| CASS4 | associated_with | gene | 0.60 |
| CD33 | associated_with | gene | 0.60 |
| NME8 | associated_with | gene | 0.60 |
| CTSH | associated_with | gene | 0.60 |
| PTK2B | associated_with | gene | 0.60 |
| CD2AP | associated_with | gene | 0.60 |
| TAU | associated_with | gene | 0.60 |
| CLU | associated_with | gene | 0.60 |
| LILRB2 | associated_with | gene | 0.60 |
| LRP1 | activates | gene | 0.60 |
| ACE | associated_with | gene | 0.60 |
| SPI1 | associated_with | gene | 0.60 |
| CTSB | associated_with | gene | 0.60 |
| INPP5D | associated_with | gene | 0.60 |
| GRN | associated_with | gene | 0.60 |
| TMEM106B | associated_with | gene | 0.60 |
| PSEN1 | associated_with | gene | 0.60 |
| EED | associated_with | gene | 0.60 |
| TAU | activates | gene | 0.60 |
| VEGFA | associated_with | gene | 0.60 |
| CTSF | associated_with | gene | 0.60 |
| VEGFB | associated_with | gene | 0.60 |
| SORL1 | regulates | gene | 0.60 |
| TAU | regulates | gene | 0.60 |
Hypotheses where this entity is a therapeutic target
| Hypothesis | Score | Disease | Analysis |
|---|---|---|---|
| No targeting hypotheses | |||
Scientific analyses that reference this entity
neurodegeneration | 2026-04-03 | 1 hypotheses Top: 0.512
Scientific publications cited in analyses involving this entity
| Title & PMID | Authors | Journal | Year | Citations |
|---|---|---|---|---|
| No papers found | ||||