Entity Detail — Knowledge Graph Node
This page aggregates everything SciDEX knows about HDAC11: its mechanistic relationships (Knowledge Graph edges), hypotheses targeting it, analyses mentioning it, and supporting scientific papers. The interactive graph below shows its immediate neighbors. All content is AI-synthesized from peer-reviewed literature.
Histone Deacetylase 11 - the sole class IV HDAC with roles in immune regulation, metabolism, and neuroinflammation
| Gene Symbol | HDAC11 |
| Full Name | HDAC11 |
| Aliases | Histone Deacetylase 11 |
| Chromosome | 3p25.2 |
| Protein Type | Gene |
| Function | encodes a protein of 347 amino acids with a molecular weight of approximately 39 kDa, making it the smallest mammalian HDAC. |
| Primary Expression | various brain regions including the cerebral cortex, hippocampus, cerebellum, and basal ganglia, with particular enrichment in neurons and, to a lesse |
| Molecular Weight | 39 kDa |
| Amino Acids | 347 aa |
| Exons | 13 |
| Pathways | NF-κB |
| NCBI Gene ID | Search NCBI |
| GeneCards | HDAC11 |
| Human Protein Atlas | HDAC11 |
| Associated Diseases | Alzheimer's disease, Parkinson's disease |
| Interactions | HDAC3, HDAC5, HDAC7 |
| KG Connections | 62 knowledge graph edges |
| Databases | GeneCardsUniProtHPASTRING |
Knowledge base pages for this entity
graph TD
HDAC11["<b>HDAC11</b>"]
Neurodegeneration{"Neurodegeneration"}
HDAC11 -->|"regulates"| Neurodegeneration
Parkinson{"Parkinson"}
HDAC11 -->|"regulates"| Parkinson
Alzheimer{"Alzheimer"}
HDAC11 -->|"regulates"| Alzheimer
Neuroinflammation{"Neuroinflammation"}
HDAC11 -->|"regulates"| Neuroinflammation
Inflammation{"Inflammation"}
HDAC11 -->|"regulates"| Inflammation
Huntington{"Huntington"}
HDAC11 -->|"regulates"| Huntington
Ms{"Ms"}
HDAC11 -->|"regulates"| Ms
HDAC2["HDAC2"]
HDAC11 -->|"expressed in"| HDAC2
SIRT7["SIRT7"]
HDAC11 -->|"regulates"| SIRT7
SIRT5["SIRT5"]
HDAC11 -->|"regulates"| SIRT5
BDNF["BDNF"]
HDAC11 -->|"regulates"| BDNF
SIRT1["SIRT1"]
HDAC11 -->|"regulates"| SIRT1
SIRT6["SIRT6"]
SIRT6 -->|"regulates"| HDAC11
BDNF -->|"regulates"| HDAC11
HDAC3["HDAC3"]
HDAC3 -->|"expressed in"| HDAC11
style HDAC11 fill:#1a3a4a,stroke:#4fc3f7,stroke-width:3px,color:#e0e0e0| Target | Relation | Type | Str |
|---|---|---|---|
| Tumor Progression | involved_in | process | 0.90 |
| malignancy | involved_in | process | 0.75 |
| Neurodegeneration | regulates | disease | 0.65 |
| Parkinson | regulates | disease | 0.65 |
| Alzheimer | regulates | disease | 0.65 |
| Neuroinflammation | regulates | disease | 0.65 |
| Inflammation | regulates | disease | 0.65 |
| Huntington | regulates | disease | 0.65 |
| Ms | regulates | disease | 0.65 |
| HDAC2 | expressed_in | gene | 0.60 |
| SIRT7 | regulates | gene | 0.60 |
| SIRT5 | regulates | gene | 0.60 |
| BDNF | regulates | gene | 0.60 |
| SIRT1 | regulates | gene | 0.60 |
| HDAC1 | expressed_in | gene | 0.60 |
| SIRT2 | regulates | gene | 0.60 |
| SIRT3 | regulates | gene | 0.60 |
| HDAC3 | expressed_in | gene | 0.60 |
| HDAC6 | expressed_in | gene | 0.60 |
| SIRT4 | regulates | gene | 0.60 |
| HDAC7 | expressed_in | gene | 0.60 |
| SIRT6 | regulates | gene | 0.60 |
| HDAC3 | interacts_with | gene | 0.60 |
| HDAC5 | interacts_with | gene | 0.60 |
| HDAC7 | interacts_with | gene | 0.60 |
| Oxidative Stress | regulates | pathway | 0.60 |
| OXIDATIVE STRESS | regulates | gene | 0.60 |
| ALZHEIMER | regulates | gene | 0.60 |
| HUNTINGTON'S DISEASE | regulates | gene | 0.60 |
| NEURODEGENERATIVE DISORDERS | regulates | gene | 0.60 |
| AND | expressed_in | gene | 0.60 |
| NEURON | regulates | gene | 0.60 |
| MITOCHONDRIAL DYSFUNCTION | regulates | gene | 0.60 |
| NEURODEGENERATIVE DISEASES | regulates | gene | 0.60 |
| ALZHEIMER'S DISEASE | regulates | gene | 0.60 |
| MITOCHONDRIA | regulates | gene | 0.60 |
| NEURODEGENERATION | regulates | gene | 0.60 |
| Source | Relation | Type | Str |
|---|---|---|---|
| SIRT6 | regulates | gene | 0.60 |
| BDNF | regulates | gene | 0.60 |
| HDAC3 | expressed_in | gene | 0.60 |
| TAU | regulates | gene | 0.60 |
| SIRT3 | regulates | gene | 0.60 |
| HDAC6 | expressed_in | gene | 0.60 |
| SIRT4 | regulates | gene | 0.60 |
| SIRT2 | regulates | gene | 0.60 |
| HDAC1 | expressed_in | gene | 0.60 |
| SIRT1 | regulates | gene | 0.60 |
| SIRT7 | regulates | gene | 0.60 |
| HDAC2 | expressed_in | gene | 0.60 |
| SIRT5 | regulates | gene | 0.60 |
| NEURODEGENERATION | regulates | gene | 0.60 |
| NEURODEGENERATIVE DISEASES | regulates | gene | 0.60 |
| NEURODEGENERATIVE DISORDERS | regulates | gene | 0.60 |
| ALZHEIMER'S DISEASE | regulates | gene | 0.60 |
| MITOCHONDRIAL DYSFUNCTION | regulates | gene | 0.60 |
| NEUROINFLAMMATION | regulates | gene | 0.60 |
| HUNTINGTON | regulates | gene | 0.60 |
| MITOCHONDRIA | regulates | gene | 0.60 |
| HUNTINGTON'S DISEASE | regulates | gene | 0.60 |
| NEURON | regulates | gene | 0.60 |
| HDAC | expressed_in | gene | 0.60 |
| OXIDATIVE STRESS | regulates | gene | 0.60 |
Hypotheses where this entity is a therapeutic target
| Hypothesis | Score | Disease | Analysis |
|---|---|---|---|
| No targeting hypotheses | |||
Scientific analyses that reference this entity
No analyses mention this entity
Scientific publications cited in analyses involving this entity
| Title & PMID | Authors | Journal | Year | Citations |
|---|---|---|---|---|
| No papers found | ||||