Entity Detail — Knowledge Graph Node
This page aggregates everything SciDEX knows about AUTOPHAGY: its mechanistic relationships (Knowledge Graph edges), hypotheses targeting it, analyses mentioning it, and supporting scientific papers. The interactive graph below shows its immediate neighbors. All content is AI-synthesized from peer-reviewed literature.
Autophagy is an evolutionarily conserved cellular degradation pathway that removes damaged organelles and misfolded proteins through lysosomal degradation. In neurodegeneration, autophagy dysfunction contributes to accumulation of toxic protein aggregates including amyloid-beta, tau, alpha-synuclein, and TDP-43. Key regulators include mTOR, AMPK, Beclin-1, and TFEB. Enhancing autophagy is a major therapeutic strategy for neurodegenerative diseases.
| Gene Symbol | AUTOPHAGY |
| Aliases | Autophagy-lysosomal pathway, Cellular self-eating |
| Function | Protein degradation; Organelle turnover; Quality control |
| Pathways | mTOR pathway, AMPK signaling, Beclin-1 complex |
| Associated Diseases | AGING, ALS, Alzheimer, Amyotrophic Lateral Sclerosis |
| Known Drugs/Compounds | METFORMIN, COENZYME Q10, RAPAMYCIN, VITAMIN D, PACLITAXEL, RESVERATROL |
| Interactions | P62, SOX9, AMPK, ERK, MAVS, MTORC1 |
| KG Connections | 7580 knowledge graph edges |
| Databases | GeneCardsUniProtNCBI GeneHPASTRING |
Knowledge base pages for this entity
graph TD
subgraph Pathology["Pathology"]
AUTOPHAGY["AUTOPHAGY"] -->|"associated with"| CANCER["CANCER"]
AUTOPHAGY["AUTOPHAGY"] -->|"associated with"| AGING["AGING"]
AUTOPHAGY["AUTOPHAGY"] -->|"associated with"| NEURON["NEURON"]
AUTOPHAGY["AUTOPHAGY"] -->|"associated with"| MICROGLIA["MICROGLIA"]
AUTOPHAGY["AUTOPHAGY"] -->|"associated with"| LYSOSOME["LYSOSOME"]
AUTOPHAGY["AUTOPHAGY"] -->|"associated with"| MITOCHONDRIA["MITOCHONDRIA"]
end
subgraph Signaling["Signaling"]
AUTOPHAGY["AUTOPHAGY"] -->|"regulates"| AGING_1["AGING"]
AUTOPHAGY["AUTOPHAGY"] -.->|"inhibits"| P62["P62"]
AUTOPHAGY["AUTOPHAGY"] -->|"regulates"| CANCER_2["CANCER"]
MTORC1["MTORC1"] -.->|"inhibits"| AUTOPHAGY["AUTOPHAGY"]
ULK1["ULK1"] -->|"regulates"| AUTOPHAGY["AUTOPHAGY"]
AMPK["AMPK"] -->|"activates"| AUTOPHAGY["AUTOPHAGY"]
SIRT1["SIRT1"] -->|"activates"| AUTOPHAGY["AUTOPHAGY"]
ROS["ROS"] -->|"activates"| AUTOPHAGY["AUTOPHAGY"]
P62_3["P62"] -->|"regulates"| AUTOPHAGY["AUTOPHAGY"]
end
style AUTOPHAGY fill:#4a1a6b,stroke:#4fc3f7,stroke-width:3px,color:#e0e0e0,font-weight:bold
style CANCER fill:#ef5350,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
style AGING fill:#5d4400,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
style AGING_1 fill:#5d4400,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
style P62 fill:#4a1a6b,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
style CANCER_2 fill:#4a1a6b,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
style NEURON fill:#4a1a6b,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
style MICROGLIA fill:#4a1a6b,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
style LYSOSOME fill:#4a1a6b,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
style MITOCHONDRIA fill:#4a1a6b,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
style MTORC1 fill:#006494,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
style ULK1 fill:#006494,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
style AMPK fill:#006494,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
style SIRT1 fill:#006494,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
style ROS fill:#5d4400,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0
style P62_3 fill:#006494,stroke:#4fc3f7,stroke-width:1px,color:#e0e0e0| Target | Relation | Type | Str |
|---|---|---|---|
| CANCER | associated_with | disease | 1.00 |
| AGING | associated_with | phenotype | 1.00 |
| AGING | regulates | phenotype | 1.00 |
| P62 | inhibits | gene | 1.00 |
| CANCER | regulates | gene | 1.00 |
| NEURON | associated_with | gene | 1.00 |
| MICROGLIA | associated_with | gene | 1.00 |
| LYSOSOME | associated_with | gene | 1.00 |
| MITOCHONDRIA | associated_with | gene | 1.00 |
| TAU | associated_with | gene | 1.00 |
| Epigenetic | regulates | pathway | 1.00 |
| Autophagy | associated_with | pathway | 1.00 |
| Autophagy | activates | pathway | 1.00 |
| Mtor | inhibits | pathway | 1.00 |
| LC3 | associated_with | gene | 1.00 |
| Als | activates | disease | 1.00 |
| Mtor | regulates | pathway | 1.00 |
| AMPK | activates | gene | 1.00 |
| Mtor | activates | pathway | 1.00 |
| Innate Immunity | regulates | pathway | 1.00 |
| Immune Response | regulates | pathway | 1.00 |
| INFLAMMATION | regulates | gene | 1.00 |
| Als | therapeutic_target | disease | 1.00 |
| Inflammation | regulates | disease | 1.00 |
| Autophagy | regulates | pathway | 1.00 |
| Carcinoma | therapeutic_target | disease | 1.00 |
| Lipid Metabolism | regulates | pathway | 1.00 |
| Oxidative Stress | regulates | pathway | 1.00 |
| MTORC1 | activates | gene | 1.00 |
| Cancer | activates | disease | 1.00 |
| Cardiovascular | activates | disease | 1.00 |
| Apoptosis | activates | pathway | 1.00 |
| Diabetes | therapeutic_target | disease | 1.00 |
| Autophagy | therapeutic_target | pathway | 1.00 |
| Oxidative Stress | therapeutic_target | pathway | 1.00 |
| Mtor | therapeutic_target | pathway | 1.00 |
| Epigenetic | activates | pathway | 1.00 |
| Autophagy | contributes_to | pathway | 1.00 |
| Als | inhibits | disease | 1.00 |
| Neuroinflammation | activates | disease | 1.00 |
| Inflammation | activates | disease | 1.00 |
| Autophagy | inhibits | pathway | 1.00 |
| Cancer | inhibits | disease | 1.00 |
| Tumor | inhibits | disease | 1.00 |
| Apoptosis | inhibits | pathway | 1.00 |
| Parkinson | associated_with | disease | 1.00 |
| Toll-Like Receptor | activates | pathway | 1.00 |
| Alzheimer | activates | disease | 1.00 |
| Neurodegeneration | activates | disease | 1.00 |
| Ferroptosis | associated_with | pathway | 1.00 |
| Source | Relation | Type | Str |
|---|---|---|---|
| MTORC1 | inhibits | protein | 1.00 |
| ULK1 | regulates | protein | 1.00 |
| AMPK | activates | protein | 1.00 |
| SIRT1 | activates | protein | 1.00 |
| ROS | activates | phenotype | 1.00 |
| P62 | regulates | protein | 1.00 |
| STING | activates | protein | 1.00 |
| ATG | regulates | gene | 1.00 |
| BECN1 | activates | gene | 1.00 |
| MTOR | associated_with | gene | 1.00 |
| AKT | inhibits | gene | 1.00 |
| P62 | associated_with | gene | 1.00 |
| ATG9A | associated_with | gene | 1.00 |
| BECN1 | associated_with | gene | 1.00 |
| LC3B | associated_with | gene | 1.00 |
| AMYLOID | associated_with | gene | 1.00 |
| AKT | activates | gene | 1.00 |
| INFLAMMATION | regulates | gene | 1.00 |
| CANCER | activates | gene | 1.00 |
| APOPTOSIS | activates | gene | 1.00 |
| CYTOKINES | activates | gene | 1.00 |
| PTEN | activates | gene | 1.00 |
| CANCER | inhibits | gene | 1.00 |
| APOPTOSIS | inhibits | gene | 1.00 |
| NEURODEGENERATIVE DISEASES | activates | gene | 1.00 |
| NEURODEGENERATION | activates | gene | 1.00 |
| FERROPTOSIS | associated_with | gene | 1.00 |
| MITOPHAGY | activates | gene | 1.00 |
| FERROPTOSIS | activates | gene | 1.00 |
| FERROPTOSIS | regulates | gene | 1.00 |
| CANCER | regulates | gene | 1.00 |
| APOPTOSIS | regulates | gene | 1.00 |
| NEURODEGENERATIVE DISEASES | associated_with | gene | 1.00 |
| SQSTM1 | associated_with | gene | 1.00 |
| INFLAMMATION | activates | gene | 1.00 |
| NEURODEGENERATIVE DISEASES | therapeutic_target | gene | 1.00 |
| LC3B | activates | gene | 1.00 |
| CANCER | therapeutic_target | gene | 1.00 |
| APOPTOSIS | therapeutic_target | gene | 1.00 |
| OXIDATIVE STRESS | regulates | gene | 1.00 |
| APOPTOSIS | associated_with | gene | 1.00 |
| AMPK | associated_with | gene | 1.00 |
| OXIDATIVE STRESS | activates | gene | 1.00 |
| NRF2 | activates | gene | 1.00 |
| MITOPHAGY | regulates | gene | 1.00 |
| CANCER | associated_with | gene | 1.00 |
| ATG | associated_with | gene | 1.00 |
| NLRP3 | activates | gene | 1.00 |
| ERK | activates | gene | 1.00 |
| ATG | activates | gene | 1.00 |
Hypotheses where this entity is a therapeutic target
| Hypothesis | Score | Disease | Analysis |
|---|---|---|---|
| Transcriptional Autophagy-Lysosome Coupling | 0.665 | neurodegeneration | Autophagy-lysosome pathway convergence a |
| Closed-loop tACS targeting entorhinal cortex layer II SST in | 0.625 | Alzheimer's disease | Circuit-level neural dynamics in neurode |
| APOE-Dependent Autophagy Restoration | 0.615 | neurodegeneration | Mechanistic role of APOE in neurodegener |
| ER Stress Reduction as Adjunctive Therapy to Support Autopha | 0.566 | neurodegeneration | Why does iron chelation therapy worsen o |
| Circadian Clock-Autophagy Synchronization | 0.547 | neurodegeneration | Sleep disruption as cause and consequenc |
| TFEB-Independent Autophagy Bypass | 0.510 | neurodegeneration | Does TFEB dysfunction cause neurodegener |
| VCP-Mediated Autophagy Enhancement | 0.415 | Alzheimer's Disease | Tau propagation mechanisms and therapeut |
Scientific analyses that reference this entity
neurodegeneration | 2026-04-15 | 1 hypotheses Top: 0.557
neurodegeneration | 2026-04-14 | 0 hypotheses
neurodegeneration | 2026-04-10 | 0 hypotheses
neurodegeneration | 2026-04-08 | 0 hypotheses
neurodegeneration | 2026-04-08 | 0 hypotheses
Scientific publications cited in analyses involving this entity
| Title & PMID | Authors | Journal | Year | Citations |
|---|---|---|---|---|
| Autophagy and ALS: mechanistic insights and therapeutic implications. [PMID:34057020] | Chua JP, De Calbiac H, Kabashi E, Barmad | Autophagy | 2022 | 2 |
| Hepatocyte FoxO1 Deficiency Protects From Liver Fibrosis via Reducing Inflammati [PMID:37678798] | Pan Q, Gao M, Kim D, Ai W, Yang W, Jiang | Cell Mol Gastroenterol Hepatol | 2024 | 1 |
| Metabolic orchestration of cell death by AMPK-mediated phosphorylation of RIPK1. [PMID:37384704] | Zhang T, Xu D, Trefts E, Lv M, Inuzuka H | Science | 2023 | 1 |
| Cinobufagin induces FOXO1-regulated apoptosis, proliferation, migration, and inv [PMID:35176466] | Zhang L, Liang B, Xu H, Gong Y, Hu W, Ji | J Ethnopharmacol | 2022 | 1 |
| Improved T-cell Receptor Diversity Estimates Associate with Survival and Respons [PMID:33177107] | Bortone DS, Woodcock MG, Parker JS, Vinc | Cancer Immunol Res | 2021 | 1 |
| Metformin Improves Mitochondrial Respiratory Activity through Activation of AMPK [PMID:31693892] | Wang Y, An H, Liu T, Qin C, Sesaki H, Gu | Cell Rep | 2019 | 1 |
| AMPK-Mediated BECN1 Phosphorylation Promotes Ferroptosis by Directly Blocking Sy [PMID:30057310] | Song X, Zhu S, Chen P, Hou W, Wen Q, Liu | Curr Biol | 2018 | 1 |
| Obestatin controls the ubiquitin-proteasome and autophagy-lysosome systems in gl [PMID:28675664] | Cid-Díaz T, Santos-Zas I, González-Sánch | J Cachexia Sarcopenia Muscle | 2017 | 1 |
| Spatiotemporal profile of postsynaptic interactomes integrates components of com [PMID:28671696] | Li J, Zhang W, Yang H, Howrigan DP, Wilk | Nat Neurosci | 2017 | 1 |
| Core Concept: The Internet of Things and the explosion of interconnectivity. [PMID:27702874] | Ornes S | Proc Natl Acad Sci U S A | 2016 | 1 |
| Gut Microbiota-Derived Tyrosol Alleviates Radiation-Induced Intestinal Injury vi [PMID:41800257] | Jin X, Xue H, Shi X, Zhou Y, Zhang J, Ze | International journal of biolo | 2026 | 0 |
| TMEM259/MEMBRALIN is a non-canonical ER-phagy receptor that associates with MAN1 [PMID:41799849] | Camilleri JM, Zhang J, Wang T, Ahmad I, | Autophagy reports | 2026 | 0 |
| Ocular delivery of different valosin-containing protein (VCP) inhibitory formula [PMID:41617017] | Cao B, Almansa-Garcia AC, Sen M, Mühlfri | J Control Release | 2026 | 0 |
| STUB1-VCP/p97 limits PINK1 overaccumulation to safeguard mitophagy and memory. [PMID:41964371] | Lin JY, Huang ZB, Fang EF, Lu G | Autophagy | 2026 | 0 |
| Inhibition of PGK1 enhances sensitivity to tyrosine kinase inhibitor in T315I-mu [PMID:41909749] | Wang H, Jiang F, Pan A, Jin C, Xue Y, Li | Acta pharmaceutica Sinica. B | 2026 | 0 |
| Diagnostic performance of transcutaneous laryngeal ultrasound for vocal cord par [PMID:41134433] | Luo X, Xiong J, Liang S, Jiang Z, Chen H | Esophagus : official journal o | 2026 | 0 |
| The vital role of p97/valosin-containing protein-mediated degradation pathways i [PMID:41780115] | Phyu SM, Loh JXY, Zhao Y, Ramadan K | Current opinion in cell biolog | 2026 | 0 |
| STUB1-VCP/p97 complex regulates mitophagy via fine-tuning of PINK1 levels. [PMID:41903135] | Lin JY, Huang ZB, Zhang SQ, Wu Y, Cheng | Cell reports | 2026 | 0 |
| Nerve injury and vocal cord paralysis after esophageal atresia and tracheoesopha [PMID:41242420] | Soyer T, Akinci SM, Pişiren B, Arslan UE | Journal of pediatric surgery | 2026 | 0 |
| Valosin-Containing Protein as a therapeutic target in CAG repeat-driven Spinocer [PMID:41435767] | Singh S, Joshi D, Makani J, Singh S, Yad | Computational biology and chem | 2026 | 0 |