Entity Detail — Knowledge Graph Node
This page aggregates everything SciDEX knows about SF3B1: its mechanistic relationships (Knowledge Graph edges), hypotheses targeting it, analyses mentioning it, and supporting scientific papers. The interactive graph below shows its immediate neighbors. All content is AI-synthesized from peer-reviewed literature.
SF3B1 is a gene implicated in neurodegeneration research. Key relationships include: therapeutic target, activates, inhibits. Associated with AD, ALI, ALS. Connected to 118 entities in the SciDEX knowledge graph.
| Gene Symbol | SF3B1 |
| Full Name | Splicing Factor 3b Subunit 1 |
| Chromosome | 2q33.1 |
| Function | is a gene located on chromosome 2q33. |
| Primary Expression | all cell types at moderate to high levels - Nuclear localization: The protein localizes to the nucleus, particularly the nucleolus - High turnov |
| Molecular Weight | 146 kDa |
| Amino Acids | 1308 aa |
| Exons | 25 |
| Gene Type | Protein coding |
| Pathways | Epigenetic, Immune Response, epigenetic regulation, inflammation |
| UniProt ID | O75533 |
| NCBI Gene ID | 6762 |
| Ensembl ID | ENSG00000115523 |
| GeneCards | SF3B1 |
| Human Protein Atlas | SF3B1 |
| Associated Diseases | AD, ALI, AMI, Als, Alzheimer, Cancer |
| Interactions | TET2, TP53, DNMT3A, U2AF1, ASXL1, APOB |
| KG Connections | 177 knowledge graph edges |
| Databases | GeneCardsHPASTRING |
Knowledge base pages for this entity
graph TD
SF3B1["SF3B1"]
SF3B1 -->|"target for"| Cancer["Cancer"]
SF3B1 -->|"target for"| Carcinoma["Carcinoma"]
SF3B1 -->|"target for"| Ms["Ms"]
SF3B1 -->|"target for"| Als["Als"]
SF3B1 -->|"target for"| Cardiovascular["Cardiovascular"]
SF3B1 -->|"activates"| Inflammation["Inflammation"]
SF3B1 -->|"target for"| Alzheimer["Alzheimer"]
SF3B1 -->|"target for"| Heart_Failure["Heart Failure"]
SF3B1 -->|"target for"| Tumor["Tumor"]
SF3B1 -->|"inhibits"| ALS["ALS"]
IDH1["IDH1"] -->|"target for"| SF3B1
VEGFA["VEGFA"] -->|"target for"| SF3B1
MDM4["MDM4"] -->|"target for"| SF3B1
APOB["APOB"] -->|"target for"| SF3B1
ASXL1["ASXL1"] -->|"activates"| SF3B1
DNMT3A["DNMT3A"] -->|"activates"| SF3B1
FAS["FAS"] -->|"target for"| SF3B1
JUN["JUN"] -->|"inhibits"| SF3B1
MET["MET"] -->|"inhibits"| SF3B1| Target | Relation | Type | Str |
|---|---|---|---|
| ds-83b31ef18d49 | provides_data_for | dataset | 1.00 |
| Immune Responses | modifies | process | 0.80 |
| Immune Response | modulates | process | 0.80 |
| Immune Cell Function | modulates | process | 0.78 |
| Cancer | therapeutic_target | disease | 0.75 |
| Als | associated_with | disease | 0.75 |
| Tumor | therapeutic_target | disease | 0.75 |
| Cancer | activates | disease | 0.75 |
| Immune Response | regulates | process | 0.75 |
| Carcinoma | therapeutic_target | disease | 0.65 |
| Ms | therapeutic_target | disease | 0.65 |
| Als | therapeutic_target | disease | 0.65 |
| Cardiovascular | therapeutic_target | disease | 0.65 |
| Inflammation | activates | disease | 0.65 |
| Alzheimer | therapeutic_target | disease | 0.65 |
| Heart Failure | therapeutic_target | disease | 0.65 |
| Cancer | associated_with | disease | 0.65 |
| Carcinoma | associated_with | disease | 0.65 |
| Alzheimer | associated_with | disease | 0.65 |
| Cardiovascular | associated_with | disease | 0.65 |
| Heart Failure | associated_with | disease | 0.65 |
| Osteoporosis | associated_with | disease | 0.65 |
| ALS | inhibits | disease | 0.65 |
| Carcinoma | inhibits | disease | 0.65 |
| Cancer | inhibits | disease | 0.65 |
| Heart Failure | activates | disease | 0.65 |
| Alzheimer | activates | disease | 0.65 |
| Cardiovascular | activates | disease | 0.65 |
| Tumor | activates | disease | 0.65 |
| Breast Cancer | activates | disease | 0.65 |
| MET | therapeutic_target | gene | 0.60 |
| SMARCA4 | associated_with | gene | 0.60 |
| TERT | therapeutic_target | gene | 0.60 |
| JUN | therapeutic_target | gene | 0.60 |
| EEF1A1 | associated_with | gene | 0.60 |
| MCL1 | therapeutic_target | gene | 0.60 |
| TET2 | activates | gene | 0.60 |
| TP53 | activates | gene | 0.60 |
| DNMT3A | activates | gene | 0.60 |
| U2AF1 | activates | gene | 0.60 |
| IDH1 | therapeutic_target | gene | 0.60 |
| APOB | therapeutic_target | gene | 0.60 |
| MDM4 | therapeutic_target | gene | 0.60 |
| VEGFA | therapeutic_target | gene | 0.60 |
| ASXL1 | activates | gene | 0.60 |
| MYC | therapeutic_target | gene | 0.60 |
| CD19 | therapeutic_target | gene | 0.60 |
| APOB | inhibits | gene | 0.60 |
| TERT | inhibits | gene | 0.60 |
| IDH1 | inhibits | gene | 0.60 |
| Source | Relation | Type | Str |
|---|---|---|---|
| ds-83b31ef18d49 | data_in | dataset | 1.00 |
| IDH1 | therapeutic_target | gene | 0.60 |
| VEGFA | therapeutic_target | gene | 0.60 |
| MDM4 | therapeutic_target | gene | 0.60 |
| APOB | therapeutic_target | gene | 0.60 |
| ASXL1 | activates | gene | 0.60 |
| APOB | associated_with | gene | 0.60 |
| EEF1A1 | associated_with | gene | 0.60 |
| DNMT3A | activates | gene | 0.60 |
| FAS | therapeutic_target | gene | 0.60 |
| MDM4 | inhibits | gene | 0.60 |
| JUN | inhibits | gene | 0.60 |
| MET | inhibits | gene | 0.60 |
| MCL1 | inhibits | gene | 0.60 |
| VEGFA | inhibits | gene | 0.60 |
| SMARCA4 | associated_with | gene | 0.60 |
| U2AF1 | activates | gene | 0.60 |
| TP53 | activates | gene | 0.60 |
| TET2 | activates | gene | 0.60 |
| U2AF1 | associated_with | gene | 0.60 |
| MCL1 | therapeutic_target | gene | 0.60 |
| JUN | therapeutic_target | gene | 0.60 |
| TERT | therapeutic_target | gene | 0.60 |
| MET | therapeutic_target | gene | 0.60 |
| CDK9 | inhibits | gene | 0.60 |
| DYRK1A | inhibits | gene | 0.60 |
| DNA | associated_with | gene | 0.60 |
| DNA | activates | gene | 0.60 |
| ALZHEIMER'S DISEASE | activates | gene | 0.60 |
| CANCER | therapeutic_target | gene | 0.60 |
| CANCER | activates | gene | 0.60 |
| ALZHEIMER | therapeutic_target | gene | 0.60 |
| GENES | activates | gene | 0.60 |
| ALZHEIMER'S DISEASE | therapeutic_target | gene | 0.60 |
| PD-L1 | inhibits | gene | 0.60 |
| WNT | inhibits | gene | 0.60 |
| LZTR1 | associated_with | gene | 0.60 |
| INFLAMMATION | activates | gene | 0.60 |
| ALZHEIMER | activates | gene | 0.60 |
| WNT | therapeutic_target | gene | 0.60 |
| PD-L1 | therapeutic_target | gene | 0.60 |
| RNA | therapeutic_target | gene | 0.60 |
| PD-1 | therapeutic_target | gene | 0.60 |
| P53 | therapeutic_target | gene | 0.60 |
| PPM1D | activates | gene | 0.60 |
| GTPBP4 | interacts_with | gene | 0.60 |
| RNA | inhibits | gene | 0.60 |
| DNMT3A | co_discussed | protein | 0.50 |
| ASXL1 | co_expressed_with | gene | 0.50 |
| DNMT3A | co_expressed_with | protein | 0.50 |
Hypotheses where this entity is a therapeutic target
| Hypothesis | Score | Disease | Analysis |
|---|---|---|---|
| No targeting hypotheses | |||
Scientific analyses that reference this entity
No analyses mention this entity
Scientific publications cited in analyses involving this entity
| Title & PMID | Authors | Journal | Year | Citations |
|---|---|---|---|---|
| No papers found | ||||