Entity Detail — Knowledge Graph Node
This page aggregates everything SciDEX knows about VAMP7: its mechanistic relationships (Knowledge Graph edges), hypotheses targeting it, analyses mentioning it, and supporting scientific papers. The interactive graph below shows its immediate neighbors. All content is AI-synthesized from peer-reviewed literature.
VAMP7 (Vesicle-Associated Membrane Protein 7, also TI-VAMP) is a longin domain-containing SNARE protein essential for synaptic vesicle trafficking, lysosomal fusion, and autophagy. Implicated in Alzheimer's disease, Parkinson's disease, and Hermansky-Pudlak syndrome.
| Gene Symbol | VAMP7 |
| Full Name | Vesicle-Associated Membrane Protein 7 |
| Aliases | Vesicle-Associated Membrane Protein 7, also TI-VAMP |
| Chromosome | Xq28 |
| Function | is a member of the SNARE (Soluble N-ethylmaleimide-sensitive factor Attachment Protein Receptor) family. |
| Amino Acids | 219 aa |
| Exons | 13 |
| Pathways | Autophagy, Lysosomal Degradation, Mitophagy |
| UniProt ID | Q9UBW5 |
| NCBI Gene ID | 6845 |
| Ensembl ID | ENSG00000125459 |
| OMIM | 300301 |
| GeneCards | VAMP7 |
| Human Protein Atlas | VAMP7 |
| Alternative Names | TI-VAMP, SYBL1 |
| Associated Diseases | ALS, Ms |
| Known Drugs/Compounds | rapamycin |
| Interactions | CXCR4, LAMP2, UBIQUITIN, RAB7A, GABARAP, DNM1L |
| KG Connections | 158 knowledge graph edges |
| Databases | GeneCardsHPASTRING |
Knowledge base pages for this entity
graph TD
VAMP7["<b>VAMP7</b>"]
Ms{"Ms"}
VAMP7 -->|"associated with"| Ms
Als{"Als"}
VAMP7 -->|"associated with"| Als
ALS{"ALS"}
VAMP7 -->|"associated with"| ALS
STX17["STX17"]
VAMP7 -->|"associated with"| STX17
RAB7A["RAB7A"]
VAMP7 -->|"associated with"| RAB7A
SNAP29["SNAP29"]
VAMP7 -->|"associated with"| SNAP29
GABARAPL1["GABARAPL1"]
VAMP7 -->|"associated with"| GABARAPL1
MAP1LC3B["MAP1LC3B"]
VAMP7 -->|"associated with"| MAP1LC3B
RB1["RB1"]
VAMP7 -->|"associated with"| RB1
PRKN["PRKN"]
VAMP7 -->|"associated with"| PRKN
RB1CC1["RB1CC1"]
VAMP7 -->|"associated with"| RB1CC1
Lysosomal_Degradation(["Lysosomal Degradation"])
VAMP7 -->|"associated with"| Lysosomal_Degradation
GABARAP["GABARAP"]
GABARAP -->|"associated with"| VAMP7
VAMP8["VAMP8"]
VAMP8 -->|"associated with"| VAMP7
RTN3["RTN3"]
RTN3 -->|"associated with"| VAMP7
LAMP2["LAMP2"]
LAMP2 -->|"associated with"| VAMP7
DNM1L["DNM1L"]
DNM1L -->|"associated with"| VAMP7
ULK1["ULK1"]
ULK1 -->|"associated with"| VAMP7
LC3["LC3"]
LC3 -->|"associated with"| VAMP7
MTOR["MTOR"]
MTOR -->|"associated with"| VAMP7
RAB2A["RAB2A"]
RAB2A -->|"associated with"| VAMP7
MAP1LC3B -->|"associated with"| VAMP7
PRKN -->|"associated with"| VAMP7
RB1 -->|"associated with"| VAMP7
style VAMP7 fill:#1a3a4a,stroke:#4fc3f7,stroke-width:3px,color:#e0e0e0| Target | Relation | Type | Str |
|---|---|---|---|
| Autophagosome-Lysosome Fusion | mediates | process | 0.95 |
| Autophagosome-Lysosome Fusion | involved_in | process | 0.90 |
| Ms | associated_with | disease | 0.65 |
| Als | associated_with | disease | 0.65 |
| ALS | associated_with | disease | 0.65 |
| Als | regulates | disease | 0.65 |
| Ms | regulates | disease | 0.65 |
| Amyotrophic Lateral Sclerosis | regulates | disease | 0.65 |
| STX17 | associated_with | gene | 0.60 |
| RAB7A | associated_with | gene | 0.60 |
| SNAP29 | associated_with | gene | 0.60 |
| GABARAPL1 | associated_with | gene | 0.60 |
| MAP1LC3B | associated_with | gene | 0.60 |
| RB1 | associated_with | gene | 0.60 |
| PRKN | associated_with | gene | 0.60 |
| RB1CC1 | associated_with | gene | 0.60 |
| LAMP2 | associated_with | gene | 0.60 |
| RAB2A | associated_with | gene | 0.60 |
| ULK1 | associated_with | gene | 0.60 |
| VAMP8 | associated_with | gene | 0.60 |
| RTN3 | associated_with | gene | 0.60 |
| LC3 | associated_with | gene | 0.60 |
| MMP9 | expressed_in | gene | 0.60 |
| PI3K | expressed_in | gene | 0.60 |
| AKT | expressed_in | gene | 0.60 |
| AKT1 | expressed_in | gene | 0.60 |
| MCC | expressed_in | gene | 0.60 |
| CXCR4 | activates | gene | 0.60 |
| ALDH1A3 | expressed_in | gene | 0.60 |
| UBIQUITIN | associated_with | gene | 0.60 |
| DNM1L | associated_with | gene | 0.60 |
| GABARAP | associated_with | gene | 0.60 |
| MTOR | associated_with | gene | 0.60 |
| SNAP29 | expressed_in | gene | 0.60 |
| VAMP8 | expressed_in | gene | 0.60 |
| STX17 | expressed_in | gene | 0.60 |
| VAMP8 | activates | entity | 0.60 |
| UBIQUITIN | regulates | gene | 0.60 |
| RAB27A | regulates | gene | 0.60 |
| Rb | associated_with | protein | 0.60 |
| VGF | associated_with | gene | 0.60 |
| VGF | expressed_in | gene | 0.60 |
| VGF | regulates | gene | 0.60 |
| Lysosomal Degradation | associated_with | pathway | 0.60 |
| Mtor | associated_with | pathway | 0.60 |
| Mitophagy | associated_with | pathway | 0.60 |
| Autophagy | associated_with | pathway | 0.60 |
| NF-ΚB | expressed_in | gene | 0.60 |
| AUTOPHAGY | expressed_in | gene | 0.60 |
| Autophagy | expressed_in | pathway | 0.60 |
| Source | Relation | Type | Str |
|---|---|---|---|
| GABARAP | associated_with | gene | 0.60 |
| VAMP8 | associated_with | gene | 0.60 |
| RTN3 | associated_with | gene | 0.60 |
| LAMP2 | associated_with | gene | 0.60 |
| DNM1L | associated_with | gene | 0.60 |
| ULK1 | associated_with | gene | 0.60 |
| LC3 | associated_with | gene | 0.60 |
| MTOR | associated_with | gene | 0.60 |
| RAB2A | associated_with | gene | 0.60 |
| MAP1LC3B | associated_with | gene | 0.60 |
| PRKN | associated_with | gene | 0.60 |
| RB1 | associated_with | gene | 0.60 |
| SNAP29 | associated_with | gene | 0.60 |
| RB1CC1 | associated_with | gene | 0.60 |
| GNAL | expressed_in | gene | 0.60 |
| GABARAPL1 | associated_with | gene | 0.60 |
| STX17 | associated_with | gene | 0.60 |
| RAB7A | associated_with | gene | 0.60 |
| SNAP29 | expressed_in | entity | 0.60 |
| STX17 | expressed_in | entity | 0.60 |
| DNM1L | activates | entity | 0.60 |
| GABARAP | activates | entity | 0.60 |
| GABARAPL1 | activates | entity | 0.60 |
| LAMP2 | activates | entity | 0.60 |
| MAP1LC3B | activates | entity | 0.60 |
| MTOR | activates | entity | 0.60 |
| PRKN | activates | entity | 0.60 |
| RAB2A | activates | entity | 0.60 |
| RAB7A | activates | entity | 0.60 |
| RB1CC1 | activates | entity | 0.60 |
| RTN3 | activates | entity | 0.60 |
| SNAP29 | activates | entity | 0.60 |
| STX17 | activates | entity | 0.60 |
| UBIQUITIN | activates | entity | 0.60 |
| ULK1 | activates | entity | 0.60 |
| RAB8A | regulates | gene | 0.60 |
| RAB11A | regulates | gene | 0.60 |
| DNAJC5 | regulates | gene | 0.60 |
| ATG7 | regulates | gene | 0.60 |
| UBIQUITIN | associated_with | gene | 0.60 |
| LC3 | activates | gene | 0.60 |
| RB1 | activates | gene | 0.60 |
| LRRK2 | interacts_with | gene | 0.60 |
| VAMP4 | interacts_with | gene | 0.60 |
| VAMP4 | associated_with | gene | 0.60 |
| LRRK2 | expressed_in | gene | 0.60 |
| VAMP4 | expressed_in | gene | 0.60 |
| LRRK2 | regulates | gene | 0.60 |
| VAMP4 | regulates | gene | 0.60 |
| ATG | associated_with | gene | 0.60 |
Hypotheses where this entity is a therapeutic target
| Hypothesis | Score | Disease | Analysis |
|---|---|---|---|
| No targeting hypotheses | |||
Scientific analyses that reference this entity
No analyses mention this entity
Scientific publications cited in analyses involving this entity
| Title & PMID | Authors | Journal | Year | Citations |
|---|---|---|---|---|
| No papers found | ||||