gene

CTSB

Entity Detail — Knowledge Graph Node

Understanding Entity Pages

This page aggregates everything SciDEX knows about CTSB: its mechanistic relationships (Knowledge Graph edges), hypotheses targeting it, analyses mentioning it, and supporting scientific papers. The interactive graph below shows its immediate neighbors. All content is AI-synthesized from peer-reviewed literature.

853Connections
0Hypotheses
0Analyses
50Outgoing
50Incoming

Summary

CTSB is a gene implicated in neurodegeneration research. Key relationships include: associated with, activates, therapeutic target. Associated with ALS, Aging, Als. Connected to 311 entities in the SciDEX knowledge graph.

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🧬 Gene Info
Gene SymbolCTSB
Full NameCathepsin B
Chromosome8p23.1
Subcellular Localization| Compartment | Function |
Molecular Weight26 kDa
Amino Acids339 aa
Exons13
PathwaysAutophagy
UniProt IDP07846
NCBI Gene ID1508
Ensembl IDENSG00000164733
OMIM116810
GeneCardsCTSB
Human Protein AtlasCTSB
Encoded ProteinCathepsin B
Associated DiseasesALS, APOPTOSIS, Aging, Alzheimer, Amyotrophic Lateral Sclerosis
Known Drugs/Compoundstannic acid, rapamycin
InteractionsC1QA, SPP1, GRN, CALCINEURIN, ATG12, ATG10
KG Connections853 knowledge graph edges
DatabasesGeneCardsHPASTRING
🔮 Predicted Structure: CTSB — AlphaFold P07846 Click to expand

AI-predicted structure from AlphaFold | Powered by Mol*

Wiki Pages (21)

Knowledge base pages for this entity

Canonical Page

CTSB Gene

gene · 2340 words

Autophagy Failure Comparison -- AD/PD/ALS/FTD/HD

mechanism · 3424 words

Microglia Activation Mechanism

mechanism · 3164 words

Section 189: Advanced Autophagy-Endolysosomal Pathway Therapy in CBS/PSP

therapeutic · 3096 words

TYRO3 - TYRO3 Receptor Tyrosine Kinase

gene · 2468 words

Endosomal-Lysosomal Pathway in Neurodegeneration

mechanism · 2413 words

Pathway Diagram

flowchart TD
    TFEB["TFEB<br/>Transcription Factor"]
    SLAMF7["SLAMF7<br/>Signaling Protein"]
    CTSB["CTSB<br/>Cathepsin B<br/>Lysosomal Protease"]
    
    ATG12["ATG12<br/>Autophagy Protein"]
    TPP1["TPP1<br/>Lysosomal Enzyme"]
    GRN["GRN<br/>Progranulin<br/>Growth Factor"]
    
    Phagocytosis["Phagocytosis<br/>Pathway"]
    Complement["Complement<br/>Pathway"]
    C1QA["C1QA<br/>Complement<br/>Component"]
    SPP1["SPP1<br/>Osteopontin<br/>Inflammatory Marker"]
    
    Neurodegeneration["Neurodegeneration<br/>Pathological Process"]
    Alzheimer["Alzheimer's<br/>Disease"]
    Parkinson["Parkinson's<br/>Disease"]
    ALS["Amyotrophic<br/>Lateral Sclerosis"]
    Huntington["Huntington's<br/>Disease"]
    
    TFEB --|"upregulates"|--> CTSB
    SLAMF7 --|"activates"|--> CTSB
    
    CTSB --|"activates"|--> ATG12
    CTSB --|"associated_with"|--> TPP1
    CTSB --|"activates"|--> GRN
    
    CTSB --|"activates"|--> Phagocytosis
    CTSB --|"activates"|--> Complement
    CTSB --|"activates"|--> C1QA
    CTSB --|"activates"|--> SPP1
    
    CTSB --|"activates"|--> Neurodegeneration
    CTSB --|"associated_with"|--> Alzheimer
    CTSB --|"associated_with"|--> Parkinson
    CTSB --|"associated_with"|--> ALS
    CTSB --|"associated_with"|--> Huntington
    
    style CTSB fill:#006494
    style TFEB fill:#4a1a6b
    style SLAMF7 fill:#4a1a6b
    style ATG12 fill:#1b5e20
    style TPP1 fill:#1b5e20
    style GRN fill:#1b5e20
    style Phagocytosis fill:#1b5e20
    style Complement fill:#ef5350
    style C1QA fill:#ef5350
    style SPP1 fill:#ef5350
    style Neurodegeneration fill:#5d4400
    style Alzheimer fill:#5d4400
    style Parkinson fill:#5d4400
    style ALS fill:#5d4400
    style Huntington fill:#5d4400

Outgoing (551)

TargetRelationTypeStr
ds-83b31ef18d49provides_data_fordataset1.00
hepato-cardiotoxicitymediatesphenotype0.95
Vandetanib-Induced Hepato-Cardiotoxicitymediatesphenotype0.95
MCOLN1degradesgene0.90
therapeutic_targetinvolved_inprocess0.88

Incoming (302)

SourceRelationTypeStr
ds-83b31ef18d49data_indataset1.00
Meninregulatesprotein0.95
SPP1upregulatesgene0.90
Vandetanibupregulatesdrug0.90
tannic acidbindscompound0.90

Targeting Hypotheses (0)

Hypotheses where this entity is a therapeutic target

HypothesisScoreDiseaseAnalysis
No targeting hypotheses

Mentioning Analyses (0)

Scientific analyses that reference this entity

No analyses mention this entity

Related Papers (0)

Scientific publications cited in analyses involving this entity

Title & PMIDAuthorsJournalYearCitations
No papers found