Entity Detail — Knowledge Graph Node
This page aggregates everything SciDEX knows about autophagy pathway: its mechanistic relationships (Knowledge Graph edges), hypotheses targeting it, analyses mentioning it, and supporting scientific papers. The interactive graph below shows its immediate neighbors. All content is AI-synthesized from peer-reviewed literature.
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| Name | autophagy pathway |
| Key Genes/Proteins | OPTN, MTOR, MTORC1, SQSTM1, PI3K, TFEB |
| Related Diseases | neurodegeneration |
| Related Pathways | PI3K-AKT-mTOR signaling |
Knowledge base pages for this entity
graph TD
autophagy_pathway["autophagy pathway"] -->|"active in"| neurons["neurons"]
style neurons fill:#1a2a3a,stroke:#4fc3f7,stroke-width:1px,color:#fff
autophagy_pathway["autophagy pathway"] -->|"protects against"| Neuronal_Health["Neuronal Health"]
style Neuronal_Health fill:#1a2a3a,stroke:#ffd54f,stroke-width:1px,color:#fff
autophagy_pathway["autophagy pathway"] -->|"mediates"| ferroptosis["ferroptosis"]
style ferroptosis fill:#1a2a3a,stroke:#ffd54f,stroke-width:1px,color:#fff
autophagy_pathway["autophagy pathway"] -->|"mediates"| phagocytosis["phagocytosis"]
style phagocytosis fill:#1a2a3a,stroke:#ffd54f,stroke-width:1px,color:#fff
autophagy_pathway["autophagy pathway"] -->|"active in"| endothelial_cells["endothelial cells"]
style endothelial_cells fill:#1a2a3a,stroke:#4fc3f7,stroke-width:1px,color:#fff
autophagy_pathway["autophagy pathway"] -->|"mediates"| protein_misfolding["protein misfolding"]
style protein_misfolding fill:#1a2a3a,stroke:#ffd54f,stroke-width:1px,color:#fff
autophagy_pathway["autophagy pathway"] -->|"mediates"| ER_stress["ER stress"]
style ER_stress fill:#1a2a3a,stroke:#ffd54f,stroke-width:1px,color:#fff
OPTN["OPTN"] -->|"regulates"| autophagy_pathway["autophagy pathway"]
style OPTN fill:#1a2a3a,stroke:#4fc3f7,stroke-width:1px,color:#fff
MTOR["MTOR"] -->|"participates in"| autophagy_pathway["autophagy pathway"]
style MTOR fill:#1a2a3a,stroke:#ce93d8,stroke-width:1px,color:#fff
MTORC1["MTORC1"] -->|"participates in"| autophagy_pathway["autophagy pathway"]
style MTORC1 fill:#1a2a3a,stroke:#ce93d8,stroke-width:1px,color:#fff
SQSTM1["SQSTM1"] -->|"participates in"| autophagy_pathway["autophagy pathway"]
style SQSTM1 fill:#1a2a3a,stroke:#ce93d8,stroke-width:1px,color:#fff
PI3K["PI3K"] -->|"participates in"| autophagy_pathway["autophagy pathway"]
style PI3K fill:#1a2a3a,stroke:#ce93d8,stroke-width:1px,color:#fff
style autophagy_pathway fill:#1b5e20,stroke:#4fc3f7,stroke-width:2px,color:#e0e0e0,font-weight:bold| Target | Relation | Type | Str |
|---|---|---|---|
| neurons | active_in | cell_type | 0.90 |
| ferroptosis | mediates | process | 0.90 |
| phagocytosis | mediates | process | 0.90 |
| neural stem cells | active_in | cell_type | 0.90 |
| endothelial cells | active_in | cell_type | 0.80 |
| protein misfolding | mediates | process | 0.80 |
| ER stress | mediates | process | 0.80 |
| unfolded protein response | crosstalk_with | pathway | 0.70 |
| necroptosis | mediates | process | 0.70 |
| lysosomal dysfunction | mediates | process | 0.70 |
| necroptosis | crosstalk_with | pathway | 0.60 |
| cerebellum | active_in | brain_region | 0.60 |
| mitochondrial dynamics | crosstalk_with | pathway | 0.60 |
| macrophages | active_in | cell_type | 0.60 |
| lipid metabolism | crosstalk_with | pathway | 0.60 |
| ferroptosis | crosstalk_with | pathway | 0.60 |
| complement cascade | crosstalk_with | pathway | 0.60 |
| microglia | active_in | cell_type | 0.60 |
| insulin signaling | crosstalk_with | pathway | 0.60 |
| blood-brain barrier | active_in | brain_region | 0.60 |
| calcium signaling | mediates | process | 0.60 |
| dendritic cells | active_in | cell_type | 0.60 |
| cGAS-STING | crosstalk_with | pathway | 0.60 |
| monocytes | active_in | cell_type | 0.60 |
| nucleus accumbens | active_in | brain_region | 0.60 |
| ubiquitin-proteasome | crosstalk_with | pathway | 0.60 |
| oxidative stress response | crosstalk_with | pathway | 0.60 |
| Source | Relation | Type | Str |
|---|---|---|---|
| OPTN | regulates | protein | 0.90 |
| MTOR | participates_in | gene | 0.90 |
| MTORC1 | participates_in | gene | 0.90 |
| SQSTM1 | participates_in | gene | 0.90 |
| PI3K | participates_in | gene | 0.90 |
| TFEB | participates_in | gene | 0.90 |
| LC3 | participates_in | gene | 0.90 |
| PI3K-AKT-mTOR signaling | crosstalk_with | pathway | 0.90 |
| AMPK | participates_in | gene | 0.90 |
| neurodegeneration | involves | disease | 0.90 |
| AKT | participates_in | gene | 0.90 |
| CALCOCO2 | participates_in | gene | 0.90 |
| GFP | participates_in | gene | 0.90 |
| NLRP3 | participates_in | gene | 0.90 |
| NLR | participates_in | gene | 0.90 |
| PINK1 | participates_in | gene | 0.90 |
| AMBRA1 | participates_in | gene | 0.90 |
| BCL2 | participates_in | gene | 0.90 |
| LC3B | participates_in | gene | 0.90 |
| PRKN | participates_in | gene | 0.90 |
| BNIP3 | participates_in | gene | 0.90 |
| RB1CC1 | participates_in | gene | 0.90 |
| GABARAP | participates_in | gene | 0.90 |
| VAMP8 | participates_in | gene | 0.90 |
| SNAP29 | participates_in | gene | 0.90 |
| LAMP2 | participates_in | gene | 0.90 |
| AR | participates_in | gene | 0.90 |
| RUBCNL | participates_in | gene | 0.90 |
| APP | participates_in | gene | 0.90 |
| GPX4 | participates_in | gene | 0.90 |
| TNF | participates_in | gene | 0.90 |
| ATG8 | participates_in | gene | 0.90 |
| P62 | links | protein | 0.90 |
| PRESENILIN | regulates | protein | 0.88 |
| neurons | active_in | cell_type | 0.85 |
| DAM microglia | active_in | cell_type | 0.85 |
| rapamycin | modulates | drug | 0.85 |
| trehalose | modulates | drug | 0.85 |
| ATG | participates_in | gene | 0.80 |
| PIK3C3 | participates_in | gene | 0.80 |
| STING1 | participates_in | gene | 0.80 |
| ROS | participates_in | gene | 0.80 |
| OPTN | participates_in | gene | 0.80 |
| STX17 | participates_in | gene | 0.80 |
| CREB | participates_in | gene | 0.80 |
| ULK1 | participates_in | gene | 0.80 |
| MAP1LC3 | participates_in | gene | 0.80 |
| BECN1 | participates_in | gene | 0.80 |
| RNA | participates_in | gene | 0.80 |
| aging | involves | disease | 0.80 |
Hypotheses where this entity is a therapeutic target
| Hypothesis | Score | Disease | Analysis |
|---|---|---|---|
| No targeting hypotheses | |||
Scientific analyses that reference this entity
No analyses mention this entity
Scientific publications cited in analyses involving this entity
| Title & PMID | Authors | Journal | Year | Citations |
|---|---|---|---|---|
| No papers found | ||||